Wall clock time and date at job start Tue Mar 31 2020 22:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46491 * 109.47486 * 2 1 4 4 N 1.28442 * 125.18803 * 266.12019 * 3 2 1 5 5 C 1.30831 * 110.97766 * 180.25916 * 4 3 2 6 6 C 1.39802 * 107.88296 * 359.73660 * 5 4 3 7 7 Cl 1.73602 * 127.34067 * 179.97438 * 6 5 4 8 8 C 1.36748 * 125.18637 * 85.92561 * 3 2 1 9 9 C 1.47030 * 126.90779 * 0.02562 * 8 3 2 10 10 O 1.21649 * 119.99382 * 266.37781 * 9 8 3 11 11 N 1.34767 * 120.00303 * 86.37161 * 9 8 3 12 12 C 1.46502 * 120.00281 * 185.00312 * 11 9 8 13 13 H 1.09004 * 110.55893 * 37.33313 * 12 11 9 14 14 C 1.54847 * 110.62895 * 160.40595 * 12 11 9 15 15 C 1.57788 * 103.27182 * 117.97178 * 14 12 11 16 16 H 1.09000 * 115.64227 * 158.98683 * 15 14 12 17 17 C 1.55843 * 105.80067 * 289.04002 * 15 14 12 18 18 C 1.54224 * 103.56461 * 71.16236 * 17 15 14 19 19 C 1.55845 * 110.62599 * 274.43587 * 12 11 9 20 20 H 1.08992 * 115.56256 * 82.69295 * 19 12 11 21 21 N 1.50230 * 100.16630 * 33.70299 * 15 14 12 22 22 C 1.36939 * 130.84004 * 125.52792 * 21 15 14 23 23 H 1.08002 * 120.00095 * 179.97438 * 22 21 15 24 24 C 1.38806 * 120.00008 * 359.65901 * 22 21 15 25 25 N 1.31621 * 119.99715 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00205 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46960 * 60.00802 * 26 24 22 28 28 H 1.48502 * 109.47177 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47434 * 300.00648 * 26 24 22 30 30 H 1.08998 * 109.47530 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47205 * 300.00085 * 1 2 3 32 32 H 1.09003 * 109.46860 * 60.00159 * 1 2 3 33 33 H 1.09002 * 109.46782 * 239.99649 * 2 1 3 34 34 H 1.09000 * 109.46926 * 120.00614 * 2 1 3 35 35 H 1.08008 * 126.05599 * 179.71894 * 5 4 3 36 36 H 0.97001 * 120.00147 * 4.99461 * 11 9 8 37 37 H 1.09005 * 110.62840 * 236.97662 * 14 12 11 38 38 H 1.08998 * 110.62893 * 359.84110 * 14 12 11 39 39 H 1.08999 * 110.62753 * 189.56405 * 17 15 14 40 40 H 1.08996 * 110.62541 * 312.42817 * 17 15 14 41 41 H 1.09000 * 110.64561 * 241.43345 * 18 17 15 42 42 H 1.08996 * 110.49802 * 118.49167 * 18 17 15 43 43 H 0.97006 * 119.99861 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.3321 2.0552 -1.0473 5 6 2.7396 3.2564 -0.7265 6 6 2.6785 3.3730 0.6653 7 17 3.1042 4.7549 1.6259 8 6 2.2062 2.1505 1.1148 9 6 1.9623 1.7573 2.5104 10 8 0.8922 2.0041 3.0336 11 7 2.9241 1.1233 3.2098 12 6 2.6446 0.6341 4.5622 13 1 1.6269 0.2491 4.6273 14 6 3.6696 -0.4517 4.9722 15 6 4.3930 0.1862 6.2210 16 1 4.8943 -0.5172 6.8859 17 6 5.2720 1.3430 5.6571 18 6 4.2406 2.4126 5.2441 19 6 2.8727 1.7628 5.6123 20 1 2.0428 2.4569 5.7445 21 7 3.2529 0.9577 6.8225 22 6 2.7261 0.9377 8.0863 23 1 1.8914 1.5768 8.3336 24 6 3.2607 0.0912 9.0477 25 7 4.2743 -0.6918 8.7447 26 14 2.5426 0.0644 10.7720 27 1 1.1115 -0.3263 10.7061 28 1 3.2862 -0.9166 11.6027 29 1 2.6596 1.4150 11.3780 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.0658 4.0220 -1.4150 36 1 3.8014 0.9907 2.8178 37 1 3.1611 -1.3772 5.2426 38 1 4.3842 -0.6283 4.1684 39 1 5.9366 1.7315 6.4287 40 1 5.8446 1.0043 4.7937 41 1 4.2971 2.6078 4.1732 42 1 4.3946 3.3305 5.8114 43 1 4.6477 -1.2837 9.4165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095463831.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:07 Heat of formation + Delta-G solvation = 89.162703 kcal Electronic energy + Delta-G solvation = -27964.265639 eV Core-core repulsion = 24073.816971 eV Total energy + Delta-G solvation = -3890.448668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.82138 -39.97036 -38.26424 -36.70134 -34.83192 -34.09852 -32.40942 -31.06385 -30.05298 -29.34439 -28.96920 -27.56845 -24.64925 -24.25505 -23.15064 -21.92233 -21.31468 -20.17741 -19.56883 -18.67967 -18.23257 -17.00849 -16.44612 -16.22184 -15.58209 -15.43778 -14.96733 -14.76437 -14.55134 -14.18150 -14.09479 -13.80957 -13.42154 -13.17599 -12.48997 -12.40535 -12.30535 -11.99515 -11.85355 -11.83312 -11.67352 -11.54769 -11.08463 -10.99008 -10.92437 -10.84906 -10.65909 -10.23790 -10.18216 -10.10703 -9.86384 -9.50776 -9.47033 -9.28048 -8.96153 -8.92775 -8.66765 -6.95121 -5.75586 -3.13542 1.29928 1.60760 2.22744 2.28427 2.69935 3.20200 3.39320 3.43366 3.44554 4.16503 4.40251 4.50777 4.56020 4.68034 4.79084 5.00189 5.14556 5.16748 5.24557 5.34370 5.40968 5.47821 5.72489 5.76031 5.78398 5.93966 5.95472 6.00973 6.06956 6.17877 6.30804 6.36517 6.45228 6.54374 6.58251 6.76370 6.89176 6.96684 7.20157 7.48754 7.53457 7.67960 7.75723 8.11548 8.18345 9.07801 9.70348 10.50128 11.34036 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.017843 B = 0.003341 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.909591 B = 8377.875590 C = 8993.789708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.115 3.885 3 N -0.263 5.263 4 N -0.274 5.274 5 C 0.021 3.979 6 C -0.119 4.119 7 Cl -0.017 7.017 8 C -0.004 4.004 9 C 0.584 3.416 10 O -0.512 6.512 11 N -0.695 5.695 12 C 0.128 3.872 13 H 0.084 0.916 14 C -0.142 4.142 15 C 0.156 3.844 16 H 0.156 0.844 17 C -0.136 4.136 18 C -0.129 4.129 19 C 0.130 3.870 20 H 0.086 0.914 21 N -0.590 5.590 22 C -0.211 4.211 23 H 0.079 0.921 24 C -0.011 4.011 25 N -0.924 5.924 26 Si 0.917 3.083 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.286 1.286 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.194 0.806 36 H 0.398 0.602 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.540 2.115 -19.664 19.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.004 4.004 3 N -0.052 5.052 4 N -0.104 5.104 5 C -0.157 4.157 6 C -0.157 4.157 7 Cl 0.011 6.989 8 C -0.134 4.134 9 C 0.365 3.635 10 O -0.386 6.386 11 N -0.346 5.346 12 C 0.022 3.978 13 H 0.102 0.898 14 C -0.181 4.181 15 C 0.049 3.951 16 H 0.173 0.827 17 C -0.175 4.175 18 C -0.169 4.169 19 C 0.021 3.979 20 H 0.104 0.896 21 N -0.310 5.310 22 C -0.339 4.339 23 H 0.097 0.903 24 C -0.206 4.206 25 N -0.572 5.572 26 Si 0.748 3.252 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.212 1.212 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.210 0.790 36 H 0.233 0.767 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.568 1.387 -19.738 19.849 hybrid contribution 0.237 0.749 1.281 1.503 sum -1.332 2.136 -18.457 18.627 Atomic orbital electron populations 1.22211 0.92941 1.03961 1.04054 1.22129 0.96542 0.76082 1.05676 1.45747 1.45520 1.12229 1.01654 1.73215 1.17553 1.06099 1.13527 1.23493 1.04480 0.94989 0.92724 1.21281 1.11213 0.90512 0.92671 1.98372 1.91613 1.38570 1.70325 1.21444 1.08745 0.92981 0.90268 1.16844 0.84824 0.78778 0.83038 1.90878 1.25155 1.52680 1.69889 1.46283 1.14255 1.56773 1.17261 1.22772 0.99739 0.96626 0.78625 0.89783 1.23625 0.97431 0.97263 0.99830 1.24161 0.88047 0.92885 0.90011 0.82745 1.22901 0.97541 0.98261 0.98826 1.22782 0.97123 0.98290 0.98704 1.23179 0.95304 0.92416 0.87023 0.89580 1.46497 1.34643 1.43948 1.05933 1.19024 1.11564 1.18621 0.84679 0.90339 1.24684 0.98586 0.98993 0.98355 1.69415 1.26450 1.28152 1.33217 0.86107 0.78192 0.77267 0.83684 1.21204 1.21578 1.21234 0.89673 0.90932 0.91339 0.87249 0.88049 0.78954 0.76691 0.91318 0.92845 0.92548 0.93649 0.93005 0.92931 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 10.24 37.16 0.38 -1.06 16 2 C 0.12 0.97 6.80 -4.05 -0.03 0.94 16 3 N -0.26 -3.00 3.35 -57.11 -0.19 -3.19 16 4 N -0.27 -3.16 11.89 30.61 0.36 -2.80 16 5 C 0.02 0.23 12.03 -17.39 -0.21 0.02 16 6 C -0.12 -1.51 6.89 -38.88 -0.27 -1.77 16 7 Cl -0.02 -0.22 29.24 -51.86 -1.52 -1.74 16 8 C 0.00 -0.05 6.72 -82.00 -0.55 -0.60 16 9 C 0.58 8.91 7.06 -12.70 -0.09 8.82 16 10 O -0.51 -9.71 16.90 5.23 0.09 -9.63 16 11 N -0.69 -9.92 3.65 -52.59 -0.19 -10.11 16 12 C 0.13 2.25 3.04 -65.44 -0.20 2.05 16 13 H 0.08 1.63 7.79 -51.93 -0.40 1.22 16 14 C -0.14 -2.52 6.30 -23.14 -0.15 -2.66 16 15 C 0.16 3.38 4.77 -61.70 -0.29 3.08 16 16 H 0.16 3.85 5.52 -51.93 -0.29 3.57 16 17 C -0.14 -2.56 6.43 -24.57 -0.16 -2.72 16 18 C -0.13 -2.38 6.31 -24.57 -0.16 -2.53 16 19 C 0.13 2.67 5.29 -62.80 -0.33 2.33 16 20 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 21 N -0.59 -14.31 2.96 -144.65 -0.43 -14.74 16 22 C -0.21 -5.71 10.59 -15.06 -0.16 -5.87 16 23 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 25 N -0.92 -25.63 10.46 55.49 0.58 -25.05 16 26 Si 0.92 21.72 29.55 -169.99 -5.02 16.70 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.79 7.90 -51.93 -0.41 0.38 16 35 H 0.19 1.45 8.06 -52.48 -0.42 1.03 16 36 H 0.40 4.88 8.05 -40.82 -0.33 4.55 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.05 0.79 7.43 -51.93 -0.39 0.40 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.04 0.72 7.91 -51.93 -0.41 0.31 16 41 H 0.05 0.84 6.56 -51.93 -0.34 0.50 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 367.81 15.07 5.54 5.54 Total: -1.00 -30.84 367.81 -9.00 -39.84 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.92 Total: 5.53 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -2.30 Total: -0.36 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.13 Total: -55.89 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.52 Total: -1.74 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.84 -9.00 -39.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095463831.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.005 kcal (2) G-P(sol) polarization free energy of solvation -30.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds