Wall clock time and date at job start Tue Mar 31 2020 22:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47187 * 2 1 4 4 N 1.28437 * 125.18436 * 275.16789 * 3 2 1 5 5 C 1.30842 * 110.97855 * 179.97438 * 4 3 2 6 6 C 1.39812 * 107.87511 * 359.77028 * 5 4 3 7 7 Cl 1.73602 * 127.33260 * 180.26572 * 6 5 4 8 8 C 1.36746 * 125.18687 * 95.12470 * 3 2 1 9 9 C 1.47024 * 126.90744 * 359.97438 * 8 3 2 10 10 O 1.21645 * 120.00511 * 266.73069 * 9 8 3 11 11 N 1.34783 * 120.00081 * 86.72891 * 9 8 3 12 12 C 1.46503 * 120.00200 * 174.74104 * 11 9 8 13 13 H 1.08995 * 110.67960 * 32.01326 * 12 11 9 14 14 C 1.54852 * 110.62675 * 269.02753 * 12 11 9 15 15 C 1.56301 * 103.40059 * 241.38625 * 14 12 11 16 16 H 1.09000 * 115.71153 * 158.93736 * 15 14 12 17 17 C 1.55845 * 105.07953 * 288.42210 * 15 14 12 18 18 C 1.54225 * 103.56261 * 71.69780 * 17 15 14 19 19 C 1.55842 * 103.56201 * 359.97438 * 18 17 15 20 20 H 1.09001 * 116.12607 * 159.06917 * 19 18 17 21 21 N 1.50236 * 100.84516 * 33.12570 * 15 14 12 22 22 C 1.36926 * 130.84323 * 126.10613 * 21 15 14 23 23 H 1.08004 * 120.00585 * 179.65801 * 22 21 15 24 24 C 1.38813 * 119.99735 * 359.66110 * 22 21 15 25 25 N 1.31622 * 120.00380 * 359.72901 * 24 22 21 26 26 Si 1.86802 * 119.99902 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47026 * 60.00127 * 26 24 22 28 28 H 1.48505 * 109.47038 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47559 * 299.99989 * 26 24 22 30 30 H 1.09004 * 109.47209 * 300.00336 * 1 2 3 31 31 H 1.09001 * 109.47331 * 60.00089 * 1 2 3 32 32 H 1.08995 * 109.47552 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47070 * 239.99708 * 2 1 3 34 34 H 1.09001 * 109.46591 * 119.99844 * 2 1 3 35 35 H 1.08003 * 126.05785 * 180.02562 * 5 4 3 36 36 H 0.97000 * 119.99735 * 354.74239 * 11 9 8 37 37 H 1.09003 * 110.62595 * 0.02562 * 14 12 11 38 38 H 1.08999 * 110.62624 * 123.02118 * 14 12 11 39 39 H 1.09005 * 110.62732 * 190.09454 * 17 15 14 40 40 H 1.08992 * 110.62898 * 313.11845 * 17 15 14 41 41 H 1.09003 * 110.63846 * 241.43377 * 18 17 15 42 42 H 1.08994 * 110.49678 * 118.49283 * 18 17 15 43 43 H 0.96998 * 120.00264 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1759 2.1104 -1.0454 5 6 2.6255 3.2968 -0.7256 6 6 2.7684 3.3412 0.6645 7 17 3.3229 4.6777 1.6237 8 6 2.3752 2.0908 1.1131 9 6 2.3418 1.6232 2.5066 10 8 1.3611 1.8326 3.1952 11 7 3.3978 0.9624 3.0212 12 6 3.4133 0.5977 4.4400 13 1 2.4032 0.3960 4.7966 14 6 4.0766 1.7144 5.2831 15 6 5.3119 1.0008 5.9217 16 1 6.1138 1.6567 6.2608 17 6 4.7153 0.0368 6.9910 18 6 4.0537 -1.0728 6.1486 19 6 4.3362 -0.6343 4.6801 20 1 4.2789 -1.4187 3.9254 21 7 5.6741 0.0329 4.8313 22 6 6.8597 -0.1797 4.1800 23 1 6.9268 -0.9384 3.4142 24 6 7.9755 0.5798 4.5041 25 7 7.8925 1.5080 5.4336 26 14 9.5931 0.2893 3.6161 27 1 9.4086 0.5252 2.1616 28 1 10.6214 1.2222 4.1430 29 1 10.0354 -1.1108 3.8383 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.8432 4.1008 -1.4132 36 1 4.1476 0.7283 2.4520 37 1 4.3937 2.5398 4.6456 38 1 3.3955 2.0665 6.0579 39 1 5.5052 -0.3788 7.6167 40 1 3.9724 0.5515 7.6001 41 1 2.9809 -1.1110 6.3380 42 1 4.5161 -2.0375 6.3573 43 1 8.6723 2.0384 5.6604 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097135080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:10 Heat of formation + Delta-G solvation = 83.386717 kcal Electronic energy + Delta-G solvation = -28043.604935 eV Core-core repulsion = 24152.905801 eV Total energy + Delta-G solvation = -3890.699134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.68291 -39.79617 -38.33905 -36.53912 -34.72914 -33.95440 -32.59561 -30.97144 -29.95767 -29.17806 -28.85755 -27.75846 -24.50734 -24.25420 -23.28362 -21.79314 -20.93803 -19.96443 -19.70796 -18.79612 -18.00580 -17.05597 -16.38445 -16.22649 -15.65999 -15.38138 -14.88196 -14.57523 -14.30973 -14.15814 -13.92132 -13.58190 -13.53409 -13.08216 -12.92540 -12.42649 -12.11899 -11.88135 -11.86155 -11.71972 -11.57835 -11.36044 -11.17623 -10.99050 -10.92272 -10.61656 -10.51107 -10.43015 -10.16203 -10.13334 -9.95257 -9.38454 -9.34216 -9.22938 -9.01761 -8.77510 -8.64030 -7.00464 -5.78699 -3.18335 1.44103 1.74771 2.38350 2.40783 2.78723 3.34219 3.37998 3.38776 3.40482 4.25681 4.36759 4.58588 4.67448 4.79237 4.87110 5.04572 5.11019 5.26684 5.29323 5.34159 5.47375 5.56111 5.62140 5.77856 5.81037 5.98094 5.99848 6.07431 6.08343 6.21972 6.34223 6.40843 6.49617 6.53367 6.65111 6.76998 6.87857 6.98630 7.26077 7.41114 7.71568 7.75719 7.80660 8.12372 8.28616 9.02377 9.66098 10.45903 11.30100 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.004294 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.174171 B = 6519.305144 C = 7236.947873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.116 3.884 3 N -0.265 5.265 4 N -0.274 5.274 5 C 0.022 3.978 6 C -0.115 4.115 7 Cl -0.017 7.017 8 C -0.003 4.003 9 C 0.586 3.414 10 O -0.526 6.526 11 N -0.686 5.686 12 C 0.126 3.874 13 H 0.084 0.916 14 C -0.145 4.145 15 C 0.155 3.845 16 H 0.154 0.846 17 C -0.139 4.139 18 C -0.127 4.127 19 C 0.126 3.874 20 H 0.087 0.913 21 N -0.590 5.590 22 C -0.219 4.219 23 H 0.077 0.923 24 C -0.006 4.006 25 N -0.917 5.917 26 Si 0.914 3.086 27 H -0.286 1.286 28 H -0.290 1.290 29 H -0.286 1.286 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.193 0.807 36 H 0.406 0.594 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.082 -1.360 -8.372 14.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.003 4.003 3 N -0.053 5.053 4 N -0.105 5.105 5 C -0.157 4.157 6 C -0.153 4.153 7 Cl 0.012 6.988 8 C -0.134 4.134 9 C 0.367 3.633 10 O -0.402 6.402 11 N -0.335 5.335 12 C 0.020 3.980 13 H 0.102 0.898 14 C -0.185 4.185 15 C 0.048 3.952 16 H 0.171 0.829 17 C -0.178 4.178 18 C -0.167 4.167 19 C 0.017 3.983 20 H 0.105 0.895 21 N -0.310 5.310 22 C -0.346 4.346 23 H 0.095 0.905 24 C -0.202 4.202 25 N -0.565 5.565 26 Si 0.745 3.255 27 H -0.212 1.212 28 H -0.215 1.215 29 H -0.213 1.213 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.210 0.790 36 H 0.241 0.759 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.751 -1.859 -8.743 15.572 hybrid contribution 1.501 0.449 -0.024 1.566 sum -11.251 -1.410 -8.767 14.333 Atomic orbital electron populations 1.22178 0.93044 1.03750 1.03888 1.22094 0.96483 0.76184 1.05585 1.45705 1.45576 1.12257 1.01810 1.73177 1.19529 1.04197 1.13555 1.23484 1.03836 0.95600 0.92743 1.21260 1.10756 0.90632 0.92675 1.98372 1.87721 1.42272 1.70434 1.21429 1.08415 0.93449 0.90077 1.16854 0.83837 0.78713 0.83876 1.90826 1.32932 1.55997 1.60415 1.46044 1.19879 1.55277 1.12305 1.22792 0.99336 0.97528 0.78364 0.89790 1.23568 0.98817 0.97493 0.98646 1.23865 0.93626 0.91190 0.86487 0.82889 1.22950 0.98693 0.97801 0.98403 1.22764 0.98440 0.98912 0.96556 1.23150 0.87036 0.92599 0.95505 0.89467 1.46534 1.04439 1.38982 1.41086 1.18917 0.85496 1.15738 1.14497 0.90530 1.24686 0.97921 0.98452 0.99172 1.69437 1.29049 1.24518 1.33453 0.86167 0.83165 0.77293 0.78914 1.21249 1.21532 1.21283 0.91214 0.91251 0.89817 0.87465 0.88074 0.78963 0.75866 0.91879 0.92653 0.92573 0.93236 0.92946 0.92361 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 10.24 37.16 0.38 -1.08 16 2 C 0.12 1.11 6.91 -4.04 -0.03 1.08 16 3 N -0.26 -3.47 3.35 -57.11 -0.19 -3.67 16 4 N -0.27 -3.67 11.89 30.61 0.36 -3.30 16 5 C 0.02 0.28 12.04 -17.39 -0.21 0.07 16 6 C -0.12 -1.74 6.89 -38.88 -0.27 -2.00 16 7 Cl -0.02 -0.25 29.24 -51.86 -1.52 -1.77 16 8 C 0.00 -0.05 6.72 -82.00 -0.55 -0.60 16 9 C 0.59 9.90 6.91 -12.70 -0.09 9.81 16 10 O -0.53 -10.25 16.73 5.24 0.09 -10.16 16 11 N -0.69 -11.49 5.07 -52.62 -0.27 -11.76 16 12 C 0.13 2.22 2.84 -65.46 -0.19 2.04 16 13 H 0.08 1.46 7.16 -51.93 -0.37 1.09 16 14 C -0.14 -2.87 6.25 -23.98 -0.15 -3.02 16 15 C 0.15 3.41 4.74 -62.55 -0.30 3.11 16 16 H 0.15 3.90 5.52 -51.93 -0.29 3.62 16 17 C -0.14 -2.64 6.41 -24.57 -0.16 -2.79 16 18 C -0.13 -2.17 6.41 -24.57 -0.16 -2.33 16 19 C 0.13 2.31 5.06 -62.81 -0.32 1.99 16 20 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 21 N -0.59 -13.41 2.98 -145.56 -0.43 -13.84 16 22 C -0.22 -5.55 10.59 -15.06 -0.16 -5.71 16 23 H 0.08 1.87 7.83 -52.48 -0.41 1.46 16 24 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 25 N -0.92 -25.20 10.47 55.49 0.58 -24.62 16 26 Si 0.91 21.14 29.55 -169.99 -5.02 16.11 16 27 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 0.93 7.65 -51.93 -0.40 0.53 16 35 H 0.19 1.83 8.06 -52.48 -0.42 1.41 16 36 H 0.41 6.83 8.64 -40.82 -0.35 6.48 16 37 H 0.06 1.37 7.98 -51.93 -0.41 0.96 16 38 H 0.05 1.02 7.83 -51.93 -0.41 0.61 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.05 0.84 7.83 -51.93 -0.41 0.43 16 41 H 0.05 0.78 7.82 -51.93 -0.41 0.38 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 369.72 15.07 5.57 5.57 Total: -1.00 -29.97 369.72 -9.08 -39.05 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.97 Total: 8.08 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -2.28 Total: 0.31 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.05 Total: -57.19 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.52 Total: -1.77 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.97 -9.08 -39.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097135080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.435 kcal (2) G-P(sol) polarization free energy of solvation -29.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds