Wall clock time and date at job start Tue Mar 31 2020 20:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46527 * 2 1 4 4 N 1.34237 * 126.28082 * 264.99362 * 3 2 1 5 5 H 0.96999 * 125.73482 * 359.96912 * 4 3 2 6 6 N 1.39930 * 108.52280 * 180.02562 * 4 3 2 7 7 C 1.30525 * 108.89427 * 359.75915 * 6 4 3 8 8 Cl 1.73609 * 126.00614 * 180.26166 * 7 6 4 9 9 C 1.38070 * 126.28233 * 85.00268 * 3 2 1 10 10 C 1.47379 * 126.42334 * 359.96094 * 9 3 2 11 11 O 1.21610 * 120.00524 * 89.99525 * 10 9 3 12 12 N 1.34783 * 119.99918 * 270.00265 * 10 9 3 13 13 C 1.46501 * 120.00166 * 179.97438 * 12 10 9 14 14 H 1.09000 * 110.68203 * 36.53171 * 13 12 10 15 15 C 1.54852 * 110.62879 * 273.54624 * 13 12 10 16 16 C 1.55845 * 103.44155 * 241.51056 * 15 13 12 17 17 H 1.09005 * 115.55425 * 158.81275 * 16 15 13 18 18 C 1.55838 * 105.73881 * 287.98275 * 16 15 13 19 19 C 1.55489 * 103.32620 * 71.93262 * 18 16 15 20 20 C 1.55850 * 103.32120 * 359.97438 * 19 18 16 21 21 H 1.08997 * 116.12119 * 159.23913 * 20 19 18 22 22 N 1.50232 * 101.05359 * 32.93779 * 16 15 13 23 23 C 1.36938 * 130.84303 * 125.28070 * 22 16 15 24 24 H 1.07999 * 120.00325 * 180.02562 * 23 22 16 25 25 C 1.38815 * 119.99817 * 0.02793 * 23 22 16 26 26 N 1.31621 * 119.99673 * 359.71804 * 25 23 22 27 27 Si 1.86795 * 120.00115 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.47274 * 89.99913 * 27 25 23 29 29 H 1.48505 * 109.47015 * 209.99478 * 27 25 23 30 30 H 1.48498 * 109.47362 * 329.99904 * 27 25 23 31 31 H 1.08998 * 109.47532 * 299.99757 * 1 2 3 32 32 H 1.09002 * 109.46986 * 60.00336 * 1 2 3 33 33 H 1.09008 * 109.46891 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47109 * 239.99961 * 2 1 3 35 35 H 1.09002 * 109.46986 * 119.99663 * 2 1 3 36 36 H 0.97000 * 119.99877 * 359.97438 * 12 10 9 37 37 H 1.08998 * 110.62808 * 123.01648 * 15 13 12 38 38 H 1.09000 * 110.62324 * 359.97438 * 15 13 12 39 39 H 1.09007 * 110.62459 * 190.50219 * 18 16 15 40 40 H 1.09000 * 110.63159 * 313.52646 * 18 16 15 41 41 H 1.09001 * 110.60654 * 241.58545 * 19 18 16 42 42 H 1.08995 * 110.89591 * 118.54883 * 19 18 16 43 43 H 0.97000 * 120.00043 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.3859 2.1383 -1.0780 5 1 2.3624 1.8290 -1.9970 6 7 2.7955 3.4070 -0.6528 7 6 2.6922 3.4710 0.6468 8 17 3.0778 4.8454 1.6349 9 6 2.2131 2.2235 1.1088 10 6 1.9507 1.8515 2.5105 11 8 2.8314 1.3478 3.1811 12 7 0.7346 2.0695 3.0493 13 6 0.4737 1.6992 4.4425 14 1 1.3531 1.8809 5.0603 15 6 0.0350 0.2174 4.5402 16 6 -1.4009 0.3033 5.1398 17 1 -2.0350 -0.5664 4.9679 18 6 -1.2123 0.7138 6.6313 19 6 -0.7763 2.2036 6.5406 20 6 -0.7628 2.4811 5.0071 21 1 -0.8292 3.5271 4.7081 22 7 -1.8847 1.5950 4.5445 23 6 -3.0011 1.8768 3.8032 24 1 -3.1802 2.8844 3.4582 25 6 -3.9027 0.8672 3.4951 26 7 -3.6815 -0.3619 3.9108 27 14 -5.4259 1.2515 2.4845 28 1 -5.1196 1.0780 1.0418 29 1 -6.5229 0.3287 2.8721 30 1 -5.8461 2.6534 2.7361 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0278 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.0323 2.4715 2.5146 37 1 0.6969 -0.3359 5.2064 38 1 0.0113 -0.2419 3.5520 39 1 -2.1509 0.6186 7.1773 40 1 -0.4321 0.1135 7.0991 41 1 0.2192 2.3384 6.9636 42 1 -1.4961 2.8505 7.0420 43 1 -4.3113 -1.0675 3.6952 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097202110.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:48 Heat of formation + Delta-G solvation = 68.792370 kcal Electronic energy + Delta-G solvation = -28256.513003 eV Core-core repulsion = 24365.181011 eV Total energy + Delta-G solvation = -3891.331992 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.64564 -39.51937 -38.04245 -36.91387 -34.25519 -33.66255 -32.52411 -31.51318 -29.73192 -29.09598 -28.71317 -27.53618 -24.39692 -24.08215 -22.66737 -21.97011 -20.90186 -19.80541 -19.36604 -18.65285 -17.83562 -16.97882 -16.37738 -15.92050 -15.43662 -15.16083 -14.82573 -14.69004 -14.16975 -14.06463 -13.79571 -13.42433 -13.38110 -12.81470 -12.72027 -12.13593 -12.03268 -11.95209 -11.82008 -11.44290 -11.30248 -11.20897 -11.09932 -10.94168 -10.92266 -10.78702 -10.48781 -10.35406 -10.11261 -9.92702 -9.77418 -9.58348 -9.25487 -9.15350 -8.98117 -8.82641 -8.41160 -6.95519 -5.76031 -3.14597 1.35380 1.41707 2.10909 2.74887 2.89717 3.32810 3.39611 3.40768 3.76787 4.33482 4.38968 4.63369 4.90783 5.12321 5.12638 5.20630 5.34564 5.36910 5.47634 5.64400 5.70531 5.81134 5.86011 5.89060 5.94278 6.06650 6.13714 6.17053 6.29825 6.35054 6.44531 6.50999 6.62441 6.75975 6.81479 6.83753 6.96377 7.13850 7.14628 7.33933 7.46681 7.78239 8.04088 8.16277 8.65798 9.06062 9.69061 10.50729 11.32672 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.011139 B = 0.004521 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.103977 B = 6191.508254 C = 7164.756745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.068 4.068 3 C 0.150 3.850 4 N -0.448 5.448 5 H 0.447 0.553 6 N -0.281 5.281 7 C 0.160 3.840 8 Cl 0.018 6.982 9 C -0.263 4.263 10 C 0.593 3.407 11 O -0.541 6.541 12 N -0.692 5.692 13 C 0.128 3.872 14 H 0.078 0.922 15 C -0.140 4.140 16 C 0.154 3.846 17 H 0.152 0.848 18 C -0.138 4.138 19 C -0.126 4.126 20 C 0.126 3.874 21 H 0.087 0.913 22 N -0.590 5.590 23 C -0.211 4.211 24 H 0.077 0.923 25 C -0.009 4.009 26 N -0.919 5.919 27 Si 0.911 3.089 28 H -0.291 1.291 29 H -0.291 1.291 30 H -0.283 1.283 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.402 0.598 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.214 2.548 -6.733 12.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.107 4.107 3 C 0.018 3.982 4 N -0.157 5.157 5 H 0.293 0.707 6 N -0.106 5.106 7 C -0.033 4.033 8 Cl 0.046 6.954 9 C -0.278 4.278 10 C 0.377 3.623 11 O -0.419 6.419 12 N -0.340 5.340 13 C 0.022 3.978 14 H 0.096 0.904 15 C -0.181 4.181 16 C 0.047 3.953 17 H 0.169 0.831 18 C -0.177 4.177 19 C -0.166 4.166 20 C 0.017 3.983 21 H 0.105 0.895 22 N -0.311 5.311 23 C -0.339 4.339 24 H 0.095 0.905 25 C -0.205 4.205 26 N -0.567 5.567 27 Si 0.742 3.258 28 H -0.218 1.218 29 H -0.217 1.217 30 H -0.209 1.209 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.237 0.763 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.886 2.901 -7.322 13.437 hybrid contribution -1.231 0.089 -0.564 1.357 sum 9.655 2.990 -7.886 12.820 Atomic orbital electron populations 1.21783 0.92079 1.03495 1.03414 1.20444 0.97831 0.87686 1.04737 1.21507 0.95413 0.95395 0.85927 1.45807 1.51769 1.09196 1.08943 0.70743 1.77098 1.23579 0.99087 1.10870 1.22527 1.00285 0.89976 0.90516 1.98414 1.92486 1.39311 1.65185 1.19898 1.18462 0.94273 0.95200 1.17059 0.82655 0.78216 0.84417 1.90757 1.45112 1.44032 1.61968 1.45968 1.12177 1.61771 1.14103 1.22801 0.97883 0.96521 0.80592 0.90436 1.23427 0.99276 0.94414 1.00956 1.23729 0.90978 0.92881 0.87713 0.83134 1.23154 0.99278 0.94909 1.00387 1.22944 0.99245 0.97734 0.96674 1.23351 0.87723 0.94269 0.92943 0.89474 1.46536 1.20933 1.03966 1.59682 1.18990 0.96461 0.94431 1.24020 0.90511 1.24653 0.98928 0.95451 1.01419 1.69464 1.36975 1.00052 1.50183 0.86124 0.82707 0.77248 0.79707 1.21824 1.21738 1.20853 0.90605 0.92668 0.90975 0.89931 0.88256 0.76289 0.92858 0.92176 0.92633 0.93333 0.92982 0.92414 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.89 37.16 0.37 -1.40 16 2 C -0.07 -0.71 6.27 -27.88 -0.17 -0.89 16 3 C 0.15 1.85 6.55 -81.60 -0.53 1.32 16 4 N -0.45 -4.82 7.28 33.86 0.25 -4.58 16 5 H 0.45 3.03 8.96 -182.73 -1.64 1.40 16 6 N -0.28 -3.84 12.64 33.18 0.42 -3.42 16 7 C 0.16 2.36 7.89 -16.91 -0.13 2.22 16 8 Cl 0.02 0.25 29.19 -51.86 -1.51 -1.26 16 9 C -0.26 -3.99 5.88 -105.04 -0.62 -4.61 16 10 C 0.59 10.26 7.26 -12.54 -0.09 10.17 16 11 O -0.54 -10.98 16.83 5.27 0.09 -10.90 16 12 N -0.69 -11.82 5.10 -51.96 -0.27 -12.09 16 13 C 0.13 2.32 2.76 -64.90 -0.18 2.15 16 14 H 0.08 1.42 7.43 -51.93 -0.39 1.04 16 15 C -0.14 -2.73 6.24 -24.24 -0.15 -2.89 16 16 C 0.15 3.34 4.67 -62.81 -0.29 3.04 16 17 H 0.15 3.78 5.52 -51.93 -0.29 3.49 16 18 C -0.14 -2.64 6.49 -23.89 -0.16 -2.79 16 19 C -0.13 -2.22 6.50 -23.89 -0.16 -2.38 16 20 C 0.13 2.37 5.07 -62.25 -0.32 2.05 16 21 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 22 N -0.59 -13.35 2.97 -145.23 -0.43 -13.78 16 23 C -0.21 -5.30 10.59 -15.06 -0.16 -5.46 16 24 H 0.08 1.88 7.83 -52.49 -0.41 1.47 16 25 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 26 N -0.92 -24.68 10.46 55.49 0.58 -24.10 16 27 Si 0.91 20.81 29.55 -169.99 -5.02 15.78 16 28 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 29 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 30 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.82 8.14 -51.92 -0.42 0.39 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.10 1.18 8.08 -51.93 -0.42 0.76 16 36 H 0.40 6.86 8.62 -40.82 -0.35 6.51 16 37 H 0.05 0.98 7.85 -51.93 -0.41 0.57 16 38 H 0.06 1.24 7.98 -51.93 -0.41 0.83 16 39 H 0.05 1.12 8.14 -51.92 -0.42 0.70 16 40 H 0.05 0.83 7.85 -51.93 -0.41 0.42 16 41 H 0.05 0.81 7.88 -51.93 -0.41 0.40 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.25 6.69 8.31 -40.82 -0.34 6.36 16 LS Contribution 370.21 15.07 5.58 5.58 Total: -1.00 -29.81 370.21 -10.23 -40.04 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -7.23 Total: 8.50 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -2.69 Total: 0.21 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.55 Total: -57.96 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -1.51 Total: -1.26 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.81 -10.23 -40.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097202110.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.834 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds