Wall clock time and date at job start Tue Mar 31 2020 20:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 N 1.35642 * 126.43332 * 265.02780 * 3 2 1 5 5 H 0.97003 * 124.93410 * 359.97438 * 4 3 2 6 6 N 1.28466 * 110.13216 * 179.97438 * 4 3 2 7 7 C 1.31828 * 110.13677 * 359.97438 * 6 4 3 8 8 C 1.47663 * 126.46468 * 180.02562 * 7 6 4 9 9 O 1.21575 * 120.00173 * 179.97438 * 8 7 6 10 10 N 1.34779 * 119.99695 * 359.97088 * 8 7 6 11 11 C 1.46502 * 120.00013 * 179.97438 * 10 8 7 12 12 H 1.09007 * 110.55731 * 32.10436 * 11 10 8 13 13 C 1.54847 * 110.62666 * 269.03120 * 11 10 8 14 14 C 1.55851 * 103.44430 * 241.50810 * 13 11 10 15 15 H 1.08995 * 116.12935 * 159.15127 * 14 13 11 16 16 C 1.55851 * 105.06240 * 288.17659 * 14 13 11 17 17 C 1.54852 * 103.44294 * 71.82418 * 16 14 13 18 18 C 1.55841 * 110.62607 * 155.00108 * 11 10 8 19 19 H 1.09000 * 115.56195 * 319.68220 * 18 11 10 20 20 N 1.50236 * 101.05011 * 32.93858 * 14 13 11 21 21 C 1.36933 * 130.84073 * 126.00886 * 20 14 13 22 22 H 1.08001 * 120.00237 * 180.02562 * 21 20 14 23 23 C 1.38816 * 119.99766 * 0.03280 * 21 20 14 24 24 N 1.31625 * 120.00164 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99976 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46864 * 60.00094 * 25 23 21 27 27 H 1.48496 * 109.47057 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47246 * 299.99800 * 25 23 21 29 29 C 1.35459 * 126.43574 * 84.71602 * 3 2 1 30 30 Cl 1.73598 * 127.23639 * 359.97438 * 29 3 2 31 31 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 32 32 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 34 34 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 35 35 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 36 36 H 0.97005 * 120.00163 * 0.02562 * 10 8 7 37 37 H 1.08997 * 110.63314 * 359.97438 * 13 11 10 38 38 H 1.09001 * 110.63054 * 123.02095 * 13 11 10 39 39 H 1.09000 * 110.62460 * 190.31298 * 16 14 13 40 40 H 1.08999 * 110.62775 * 313.33077 * 16 14 13 41 41 H 1.09000 * 110.62389 * 241.50732 * 17 16 14 42 42 H 1.08996 * 110.62252 * 118.49282 * 17 16 14 43 43 H 0.96994 * 119.99963 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3900 2.1488 -1.0872 5 1 2.3621 1.8300 -2.0029 6 7 2.7710 3.3219 -0.7280 7 6 2.6920 3.4434 0.5823 8 6 3.0401 4.6393 1.3754 9 8 2.9211 4.6223 2.5851 10 7 3.4899 5.7498 0.7580 11 6 3.8347 6.9366 1.5447 12 1 4.2188 6.6487 2.5234 13 6 2.6081 7.8705 1.6894 14 6 3.0719 9.1876 0.9972 15 1 2.2807 9.8596 0.6649 16 6 4.1181 9.8099 1.9704 17 6 5.3447 8.8759 1.8257 18 6 4.8726 7.8164 0.7849 19 1 5.6598 7.2711 0.2642 20 7 3.9676 8.6464 -0.0808 21 6 3.9610 8.8473 -1.4353 22 1 4.6991 8.3623 -2.0568 23 6 3.0055 9.6746 -2.0095 24 7 2.1057 10.2655 -1.2521 25 14 2.9968 9.9493 -3.8572 26 1 2.8088 8.6493 -4.5499 27 1 1.8852 10.8661 -4.2160 28 1 4.2890 10.5502 -4.2744 29 6 2.2058 2.2128 1.0852 30 17 1.8979 1.8040 2.7440 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 3.5845 5.7635 -0.2073 37 1 1.7433 7.4511 1.1754 38 1 2.3826 8.0483 2.7409 39 1 4.3705 10.8253 1.6647 40 1 3.7448 9.7978 2.9944 41 1 5.5797 8.4004 2.7780 42 1 6.2053 9.4280 1.4483 43 1 1.4383 10.8438 -1.6533 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097240591.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:33 Heat of formation + Delta-G solvation = 70.437924 kcal Electronic energy + Delta-G solvation = -27408.428377 eV Core-core repulsion = 23517.167741 eV Total energy + Delta-G solvation = -3891.260636 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.86946 -39.60152 -38.12905 -36.52312 -34.60759 -33.67670 -32.50128 -31.81746 -29.59264 -29.07085 -28.75225 -27.69992 -24.43357 -24.13867 -23.80691 -21.28979 -21.11458 -19.75925 -19.52968 -18.60263 -18.02010 -16.97585 -16.72379 -16.09605 -15.61787 -15.10468 -14.77875 -14.58196 -14.23809 -14.16558 -13.91669 -13.72343 -13.36174 -12.93355 -12.70396 -12.19581 -12.08007 -11.99208 -11.77710 -11.57877 -11.33983 -11.20646 -11.07254 -10.91375 -10.86463 -10.64366 -10.45123 -10.31013 -10.09440 -9.88379 -9.75048 -9.49871 -9.21518 -9.12583 -8.92533 -8.88798 -8.36634 -6.90850 -5.70749 -3.09493 1.47947 1.74789 1.97329 2.81952 3.38610 3.42943 3.44235 3.54511 3.64708 4.23752 4.40037 4.44007 4.59274 4.85093 5.07026 5.12131 5.17682 5.28109 5.40250 5.46557 5.63447 5.70252 5.75518 5.80785 5.87646 5.92743 6.10547 6.17431 6.20064 6.36334 6.47756 6.54593 6.66858 6.67835 6.79231 6.88343 7.00849 7.16728 7.37919 7.50642 7.57409 7.83337 8.10141 8.21345 8.64870 9.11031 9.74229 10.55543 11.38271 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.013417 B = 0.003501 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.423472 B = 7995.936539 C = 9451.723474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.054 4.054 3 C 0.026 3.974 4 N -0.376 5.376 5 H 0.450 0.550 6 N -0.237 5.237 7 C 0.012 3.988 8 C 0.592 3.408 9 O -0.529 6.529 10 N -0.689 5.689 11 C 0.128 3.872 12 H 0.083 0.917 13 C -0.142 4.142 14 C 0.154 3.846 15 H 0.153 0.847 16 C -0.139 4.139 17 C -0.127 4.127 18 C 0.125 3.875 19 H 0.088 0.912 20 N -0.591 5.591 21 C -0.213 4.213 22 H 0.077 0.923 23 C -0.010 4.010 24 N -0.920 5.920 25 Si 0.915 3.085 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.286 1.286 29 C -0.101 4.101 30 Cl -0.009 7.009 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.409 0.591 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.502 -19.212 2.789 19.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 C -0.100 4.100 4 N -0.091 5.091 5 H 0.296 0.704 6 N -0.072 5.072 7 C -0.151 4.151 8 C 0.375 3.625 9 O -0.404 6.404 10 N -0.339 5.339 11 C 0.022 3.978 12 H 0.101 0.899 13 C -0.183 4.183 14 C 0.047 3.953 15 H 0.170 0.830 16 C -0.178 4.178 17 C -0.167 4.167 18 C 0.017 3.983 19 H 0.106 0.894 20 N -0.311 5.311 21 C -0.341 4.341 22 H 0.095 0.905 23 C -0.205 4.205 24 N -0.568 5.568 25 Si 0.745 3.255 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.138 4.138 30 Cl 0.019 6.981 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.244 0.756 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.420 -18.461 2.580 18.645 hybrid contribution -0.213 -0.489 -1.174 1.290 sum -0.632 -18.950 1.406 19.013 Atomic orbital electron populations 1.21777 0.93615 1.02458 1.02962 1.20158 0.96814 0.87999 1.04306 1.21159 1.05578 0.96812 0.86481 1.43225 1.47776 1.08509 1.09592 0.70419 1.73768 1.17322 1.02126 1.14030 1.22101 1.07100 0.96334 0.89558 1.16790 0.78123 0.81200 0.86414 1.90796 1.53970 1.82962 1.12703 1.45883 1.64228 1.12047 1.11698 1.22705 0.97217 0.83618 0.94233 0.89948 1.23454 0.96949 0.98678 0.99209 1.23765 0.93947 0.92855 0.84732 0.83016 1.23069 0.97305 0.98819 0.98638 1.22865 0.98218 0.97874 0.97719 1.23176 0.92248 0.91796 0.91121 0.89417 1.46528 1.31259 1.51494 1.01837 1.18955 1.11399 1.23276 0.80426 0.90485 1.24683 0.98021 0.99988 0.97855 1.69452 1.19269 1.34904 1.33165 0.86151 0.76999 0.77529 0.84782 1.21350 1.21661 1.21322 1.20474 1.10929 0.94465 0.87967 1.98348 1.94266 1.92872 1.12579 0.92491 0.91491 0.91668 0.88785 0.90169 0.75574 0.92181 0.92677 0.92661 0.93286 0.92930 0.92460 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.89 37.16 0.37 -0.58 16 2 C -0.05 -0.35 6.36 -27.88 -0.18 -0.53 16 3 C 0.03 0.27 6.51 -81.90 -0.53 -0.26 16 4 N -0.38 -3.84 6.86 33.62 0.23 -3.61 16 5 H 0.45 2.77 8.96 -190.44 -1.71 1.06 16 6 N -0.24 -3.42 11.91 33.42 0.40 -3.03 16 7 C 0.01 0.19 7.13 -82.76 -0.59 -0.40 16 8 C 0.59 11.08 7.82 -12.41 -0.10 10.98 16 9 O -0.53 -10.90 15.52 5.30 0.08 -10.81 16 10 N -0.69 -12.97 5.07 -52.39 -0.27 -13.24 16 11 C 0.13 2.49 2.80 -65.44 -0.18 2.31 16 12 H 0.08 1.58 7.23 -51.92 -0.38 1.20 16 13 C -0.14 -2.99 6.23 -24.24 -0.15 -3.14 16 14 C 0.15 3.54 4.72 -62.80 -0.30 3.25 16 15 H 0.15 4.01 5.52 -51.93 -0.29 3.73 16 16 C -0.14 -2.78 6.44 -24.23 -0.16 -2.93 16 17 C -0.13 -2.34 6.44 -24.24 -0.16 -2.49 16 18 C 0.13 2.50 5.06 -62.80 -0.32 2.18 16 19 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 20 N -0.59 -14.19 2.99 -145.81 -0.44 -14.62 16 21 C -0.21 -5.63 10.59 -15.06 -0.16 -5.79 16 22 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 24 N -0.92 -26.00 10.47 55.49 0.58 -25.42 16 25 Si 0.91 21.63 29.55 -169.99 -5.02 16.60 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 29 C -0.10 -1.41 6.79 -39.31 -0.27 -1.67 16 30 Cl -0.01 -0.13 28.02 -51.86 -1.45 -1.58 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.41 7.80 8.38 -40.82 -0.34 7.46 16 37 H 0.06 1.38 7.98 -51.93 -0.41 0.96 16 38 H 0.05 1.07 7.82 -51.93 -0.41 0.67 16 39 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.05 0.88 7.82 -51.93 -0.41 0.47 16 41 H 0.05 0.85 7.82 -51.93 -0.41 0.45 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 366.77 15.07 5.53 5.53 Total: -1.00 -31.55 366.77 -10.44 -41.99 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -7.27 Total: 7.63 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -2.81 Total: 0.56 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.51 Total: -59.92 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.08 Total: -10.81 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.45 Total: -1.58 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.55 -10.44 -41.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097240591.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.428 kcal (2) G-P(sol) polarization free energy of solvation -31.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds