Wall clock time and date at job start Tue Mar 31 2020 21:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47116 * 2 1 4 4 O 1.42892 * 109.47058 * 300.00096 * 3 2 1 5 5 C 1.53000 * 109.47326 * 240.00568 * 2 1 3 6 6 O 1.42901 * 109.47023 * 184.99948 * 5 2 1 7 7 N 1.46494 * 109.47307 * 119.99906 * 2 1 3 8 8 C 1.34779 * 119.99760 * 60.00305 * 7 2 1 9 9 O 1.21363 * 119.99803 * 359.97438 * 8 7 2 10 10 C 1.49356 * 120.00255 * 179.97438 * 8 7 2 11 11 O 1.21377 * 119.99854 * 0.02562 * 10 8 7 12 12 N 1.34769 * 120.00317 * 179.97438 * 10 8 7 13 13 C 1.39717 * 120.00356 * 174.78692 * 12 10 8 14 14 C 1.39026 * 120.04122 * 326.28632 * 13 12 10 15 15 C 1.38135 * 120.06033 * 180.02562 * 14 13 12 16 16 C 1.38182 * 120.14727 * 359.71300 * 15 14 13 17 17 C 1.38914 * 120.08070 * 0.56403 * 16 15 14 18 18 O 1.35759 * 120.03335 * 179.71476 * 17 16 15 19 19 C 1.34830 * 116.99906 * 173.81952 * 18 17 16 20 20 H 1.07996 * 120.00265 * 354.59877 * 19 18 17 21 21 C 1.38655 * 119.99479 * 174.60137 * 19 18 17 22 22 N 1.31550 * 120.00217 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99636 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47344 * 89.99948 * 23 21 19 25 25 H 1.48504 * 109.46953 * 210.00005 * 23 21 19 26 26 H 1.48495 * 109.47373 * 329.99768 * 23 21 19 27 27 C 1.38762 * 119.93859 * 359.43847 * 17 16 15 28 28 H 1.09001 * 109.47193 * 299.99749 * 1 2 3 29 29 H 1.09001 * 109.46870 * 60.00120 * 1 2 3 30 30 H 1.09000 * 109.46687 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46885 * 60.00062 * 3 2 1 32 32 H 1.08995 * 109.46933 * 179.97438 * 3 2 1 33 33 H 0.96702 * 114.00073 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.47100 * 304.99779 * 5 2 1 35 35 H 1.08996 * 109.47669 * 64.99768 * 5 2 1 36 36 H 0.96703 * 113.99947 * 179.97438 * 6 5 2 37 37 H 0.96998 * 120.00751 * 240.00286 * 7 2 1 38 38 H 0.97005 * 120.00135 * 354.78461 * 12 10 8 39 39 H 1.07997 * 119.96759 * 359.97438 * 14 13 12 40 40 H 1.07998 * 119.92853 * 180.02562 * 15 14 13 41 41 H 1.08003 * 119.95720 * 180.27631 * 16 15 14 42 42 H 0.97004 * 119.99970 * 180.02562 * 22 21 19 43 43 H 1.08000 * 120.07407 * 180.25585 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 1.5637 2.1162 -1.1667 5 6 2.0400 -0.7211 -1.2493 6 8 3.4642 -0.8236 -1.1920 7 7 2.0183 -0.6906 1.1961 8 6 1.6928 -1.9809 1.4094 9 8 0.9947 -2.5706 0.6107 10 6 2.1911 -2.6852 2.6285 11 8 2.8889 -2.0954 3.4275 12 7 1.8651 -3.9754 2.8420 13 6 2.4184 -4.6661 3.9232 14 6 3.7135 -4.3820 4.3414 15 6 4.2610 -5.0650 5.4099 16 6 3.5220 -6.0280 6.0702 17 6 2.2295 -6.3207 5.6538 18 8 1.5064 -7.2711 6.2996 19 6 0.2182 -7.4169 5.9293 20 1 -0.2185 -6.7357 5.2140 21 6 -0.5459 -8.4414 6.4670 22 7 -0.0137 -9.2714 7.3379 23 14 -2.3304 -8.6440 5.9534 24 1 -2.4070 -9.5414 4.7728 25 1 -3.1043 -9.2344 7.0750 26 1 -2.8988 -7.3172 5.6044 27 6 1.6760 -5.6368 4.5808 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.8487 3.0379 -1.2327 34 1 1.6055 -1.7197 -1.2953 35 1 1.7517 -0.1582 -2.1370 36 1 3.8573 -1.2714 -1.9537 37 1 2.5760 -0.2192 1.8347 38 1 1.2464 -4.4245 2.2450 39 1 4.2922 -3.6273 3.8298 40 1 5.2671 -4.8423 5.7333 41 1 3.9516 -6.5570 6.9081 42 1 -0.5482 -9.9884 7.7137 43 1 0.6698 -5.8597 4.2579 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261513414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:46 Heat of formation + Delta-G solvation = -154.300670 kcal Electronic energy + Delta-G solvation = -29007.401882 eV Core-core repulsion = 24633.393933 eV Total energy + Delta-G solvation = -4374.007948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.16067 -39.81911 -38.70140 -37.91261 -36.55140 -36.53704 -35.29639 -34.24574 -32.26659 -31.61448 -29.54503 -28.71554 -27.06033 -26.24846 -25.54845 -24.97300 -22.02873 -21.86523 -20.34021 -19.92912 -18.94941 -18.14093 -17.99897 -17.54501 -17.29439 -16.56476 -16.01283 -15.87616 -15.57299 -15.30281 -15.09156 -14.79902 -14.60907 -14.26056 -14.05262 -13.92958 -13.68987 -13.52687 -13.23419 -13.03583 -12.72294 -12.47114 -12.36717 -12.20638 -11.87762 -11.72740 -11.59141 -11.15239 -11.06931 -10.94288 -10.79596 -10.57562 -10.45073 -10.26196 -9.91767 -9.57957 -9.52303 -9.40374 -8.83442 -7.82931 -7.23269 -6.47392 -4.07197 1.19342 2.02533 2.19430 2.35870 3.11270 3.12744 3.17378 3.19341 3.39215 3.75588 3.94752 3.95608 4.28050 4.38703 4.52304 4.55753 4.80424 5.05168 5.07774 5.22438 5.22663 5.25162 5.38069 5.43288 5.55546 5.62215 5.90766 5.94094 5.96393 6.04106 6.13779 6.18518 6.53322 6.71700 6.86668 6.95925 7.05958 7.10350 7.22959 7.30783 7.36288 7.44920 7.66291 7.72574 7.95858 8.01805 8.97997 9.66686 10.70356 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.016440 B = 0.002471 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.713131 B =11327.262501 C =12523.196627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.181 3.819 3 C 0.078 3.922 4 O -0.564 6.564 5 C 0.065 3.935 6 O -0.570 6.570 7 N -0.685 5.685 8 C 0.522 3.478 9 O -0.516 6.516 10 C 0.505 3.495 11 O -0.501 6.501 12 N -0.635 5.635 13 C 0.173 3.827 14 C -0.204 4.204 15 C -0.063 4.063 16 C -0.195 4.195 17 C 0.167 3.833 18 O -0.174 6.174 19 C -0.393 4.393 20 H 0.091 0.909 21 C 0.040 3.960 22 N -0.861 5.861 23 Si 0.940 3.060 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.250 4.250 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.386 0.614 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.380 0.620 37 H 0.413 0.587 38 H 0.418 0.582 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.270 0.730 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.752 19.981 -16.525 26.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.095 3.905 3 C 0.000 4.000 4 O -0.369 6.369 5 C -0.014 4.014 6 O -0.376 6.376 7 N -0.340 5.340 8 C 0.303 3.697 9 O -0.392 6.392 10 C 0.286 3.714 11 O -0.375 6.375 12 N -0.281 5.281 13 C 0.081 3.919 14 C -0.225 4.225 15 C -0.081 4.081 16 C -0.215 4.215 17 C 0.113 3.887 18 O -0.077 6.077 19 C -0.469 4.469 20 H 0.108 0.892 21 C -0.164 4.164 22 N -0.495 5.495 23 Si 0.765 3.235 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.192 1.192 27 C -0.271 4.271 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.233 0.767 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.227 0.773 37 H 0.250 0.750 38 H 0.256 0.744 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.080 0.920 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.340 19.386 -15.796 25.229 hybrid contribution -0.648 0.190 -0.709 0.979 sum 2.692 19.575 -16.506 25.747 Atomic orbital electron populations 1.22151 0.92245 1.04511 1.03165 1.20321 0.95131 0.90855 0.84182 1.22129 0.98562 0.91135 0.88209 1.86381 1.77441 1.29428 1.43675 1.22575 0.81450 1.00768 0.96571 1.86408 1.19957 1.82309 1.48891 1.45491 1.52575 1.11266 1.24649 1.19974 0.80843 0.82452 0.86456 1.90707 1.36595 1.65827 1.46081 1.20014 0.82127 0.82819 0.86455 1.90786 1.36153 1.65477 1.45080 1.43124 1.45730 1.10597 1.28670 1.17392 0.92282 0.93716 0.88527 1.20527 0.94229 1.05306 1.02410 1.20521 0.98501 0.94544 0.94577 1.20290 0.93753 1.03189 1.04262 1.19075 0.91121 0.88820 0.89687 1.84025 1.23336 1.46687 1.53631 1.21286 0.83248 1.14935 1.27446 0.89178 1.25280 1.00246 0.94827 0.96057 1.70033 1.37043 1.15738 1.26728 0.85726 0.80382 0.79014 0.78418 1.19835 1.20222 1.19191 1.20842 1.01726 1.03728 1.00822 0.91769 0.90382 0.89978 0.92736 0.91863 0.76662 0.91320 0.91887 0.77284 0.75043 0.74436 0.86317 0.86409 0.86199 0.91964 0.84995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 8.26 37.16 0.31 -1.19 16 2 C 0.18 1.67 0.67 -131.82 -0.09 1.58 16 3 C 0.08 0.54 5.92 37.16 0.22 0.76 16 4 O -0.56 -3.55 12.22 -35.23 -0.43 -3.99 16 5 C 0.06 0.62 5.56 37.16 0.21 0.82 16 6 O -0.57 -5.34 12.96 -35.23 -0.46 -5.80 16 7 N -0.69 -7.20 4.86 -48.06 -0.23 -7.44 16 8 C 0.52 6.82 7.31 -11.63 -0.08 6.73 16 9 O -0.52 -7.26 12.75 5.49 0.07 -7.19 16 10 C 0.50 7.70 7.62 -11.63 -0.09 7.62 16 11 O -0.50 -8.50 14.18 5.47 0.08 -8.42 16 12 N -0.64 -10.21 5.32 -10.31 -0.05 -10.27 16 13 C 0.17 3.32 6.27 -83.77 -0.52 2.80 16 14 C -0.20 -3.82 8.65 -39.33 -0.34 -4.16 16 15 C -0.06 -1.15 10.03 -39.64 -0.40 -1.54 16 16 C -0.20 -4.10 9.99 -39.35 -0.39 -4.49 16 17 C 0.17 4.01 6.64 -39.14 -0.26 3.75 16 18 O -0.17 -4.88 9.76 0.02 0.00 -4.88 16 19 C -0.39 -10.83 9.44 30.89 0.29 -10.54 16 20 H 0.09 2.30 5.30 -52.49 -0.28 2.02 16 21 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 22 N -0.86 -24.99 13.67 55.48 0.76 -24.23 16 23 Si 0.94 20.36 29.55 -169.99 -5.02 15.34 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 27 C -0.25 -5.39 9.05 -39.19 -0.35 -5.74 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.66 7.68 -51.93 -0.40 0.26 16 30 H 0.08 0.90 6.17 -51.93 -0.32 0.58 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.45 7.82 -51.93 -0.41 0.04 16 33 H 0.39 0.74 9.12 45.56 0.42 1.15 16 34 H 0.07 0.76 6.32 -51.93 -0.33 0.43 16 35 H 0.06 0.55 7.54 -51.93 -0.39 0.15 16 36 H 0.38 2.12 9.12 45.56 0.42 2.54 16 37 H 0.41 3.94 7.94 -40.82 -0.32 3.62 16 38 H 0.42 5.98 8.30 -40.82 -0.34 5.64 16 39 H 0.12 2.13 6.44 -52.49 -0.34 1.79 16 40 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 42 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.13 2.81 5.71 -52.49 -0.30 2.51 16 LS Contribution 365.65 15.07 5.51 5.51 Total: -1.00 -34.26 365.65 -4.80 -39.07 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -3.42 Total: 14.91 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -1.60 Total: -2.62 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.47 Total: -41.93 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.74 Total: -30.27 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.26 -4.80 -39.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261513414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.235 kcal (2) G-P(sol) polarization free energy of solvation -34.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds