Wall clock time and date at job start Tue Mar 31 2020 20:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46980 * 2 1 4 4 C 1.50697 * 109.47054 * 240.00060 * 2 1 3 5 5 H 1.07992 * 120.00345 * 240.00046 * 4 2 1 6 6 C 1.37889 * 119.99902 * 60.00256 * 4 2 1 7 7 N 1.31513 * 119.99874 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99781 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47287 * 59.99809 * 8 6 4 10 10 H 1.48504 * 109.46746 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46950 * 299.99703 * 8 6 4 12 12 C 1.52991 * 109.47042 * 120.00150 * 2 1 3 13 13 N 1.46498 * 109.47388 * 299.99892 * 12 2 1 14 14 C 1.34771 * 120.00218 * 179.97438 * 13 12 2 15 15 O 1.21586 * 120.00450 * 0.02562 * 14 13 12 16 16 C 1.47606 * 120.00239 * 180.02562 * 14 13 12 17 17 C 1.41543 * 120.49933 * 5.61140 * 16 14 13 18 18 N 1.30903 * 120.06892 * 179.97438 * 17 16 14 19 19 C 1.34157 * 121.16839 * 0.02648 * 18 17 16 20 20 C 1.38706 * 132.24408 * 179.97438 * 19 18 17 21 21 C 1.38848 * 107.66898 * 180.02562 * 20 19 18 22 22 N 1.31292 * 108.99265 * 0.02562 * 21 20 19 23 23 N 1.37258 * 120.90007 * 359.72159 * 19 18 17 24 24 C 1.36073 * 119.97834 * 0.53344 * 23 19 18 25 25 C 1.50697 * 120.55966 * 179.75050 * 24 23 19 26 26 F 1.39903 * 109.47137 * 237.26429 * 25 24 23 27 27 F 1.39905 * 109.47334 * 117.26536 * 25 24 23 28 28 H 1.08999 * 109.47462 * 299.99920 * 1 2 3 29 29 H 1.09007 * 109.47498 * 59.99904 * 1 2 3 30 30 H 1.09006 * 109.47085 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47094 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47430 * 300.00326 * 3 2 1 33 33 H 1.09004 * 109.47066 * 60.00231 * 3 2 1 34 34 H 0.96997 * 119.99831 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.47470 * 179.97438 * 12 2 1 36 36 H 1.09003 * 109.47396 * 60.00248 * 12 2 1 37 37 H 0.97001 * 120.00023 * 0.02562 * 13 12 2 38 38 H 1.08003 * 119.96680 * 359.97438 * 17 16 14 39 39 H 1.07996 * 126.16862 * 359.97438 * 20 19 18 40 40 H 1.08004 * 125.50209 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.47094 * 357.26227 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6531 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.8280 -2.5197 -4.0083 10 1 1.8268 -0.4197 -5.2205 11 1 3.8075 -1.1188 -4.0077 12 6 2.0399 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8768 -0.4915 3.6694 15 8 2.5758 -1.4801 3.7810 16 6 1.3844 0.2039 4.8747 17 6 0.4754 1.2829 4.7605 18 7 0.0437 1.8933 5.8350 19 6 0.4478 1.5162 7.0574 20 6 0.1462 1.9886 8.3262 21 6 0.8545 1.2210 9.2411 22 7 1.5579 0.3228 8.5913 23 7 1.3242 0.4724 7.2193 24 6 1.8034 -0.1881 6.1304 25 6 2.7705 -1.3324 6.2927 26 9 3.9415 -1.0583 5.5780 27 9 2.1895 -2.5071 5.8030 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 0.7081 1.1610 -3.4844 35 1 3.1299 -0.7217 1.2490 36 1 1.6767 -1.7490 1.2491 37 1 0.9937 0.7578 2.3564 38 1 0.1376 1.6029 3.7858 39 1 -0.5190 2.8066 8.5604 40 1 0.8306 1.3431 10.3139 41 1 3.0104 -1.4585 7.3485 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417552718.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:02 Heat of formation + Delta-G solvation = -6.878230 kcal Electronic energy + Delta-G solvation = -29759.360651 eV Core-core repulsion = 25312.950655 eV Total energy + Delta-G solvation = -4446.409996 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.06313 -47.03025 -42.80486 -39.86797 -38.06501 -36.54039 -34.94887 -33.56469 -31.87002 -30.76877 -29.75044 -28.03622 -25.81642 -25.80681 -25.16752 -24.32303 -23.79009 -21.52296 -20.88767 -19.28301 -18.99901 -18.13666 -17.61454 -17.48077 -16.99050 -16.54668 -16.35178 -15.87092 -15.16961 -15.02276 -14.84369 -14.65972 -14.45791 -13.82583 -13.70726 -13.51421 -13.33706 -13.17186 -13.00112 -12.96566 -12.73669 -12.28098 -11.81066 -11.72502 -11.70429 -11.45116 -11.26381 -10.90154 -10.77843 -10.53863 -10.46506 -10.25027 -9.99028 -9.83881 -9.72064 -9.40799 -8.87651 -8.65859 -8.44305 -8.38427 -6.07269 -4.17540 -0.28457 0.17669 1.32318 2.01372 2.65465 2.74680 3.24355 3.27724 3.28158 3.32297 3.36417 3.38612 3.65893 3.83218 4.21564 4.35934 4.42358 4.55987 4.69865 4.71738 4.86640 4.95534 5.19901 5.33718 5.50214 5.76798 5.97273 6.09386 6.22184 6.40479 6.61052 6.72159 6.80022 6.83959 6.84227 6.93540 7.06156 7.26596 7.47975 7.62833 7.73601 7.94080 8.05635 8.26920 8.36711 8.82637 9.48710 10.94218 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.021484 B = 0.002950 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.978379 B = 9490.469979 C =10434.917143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.132 4.132 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.132 3.868 13 N -0.700 5.700 14 C 0.554 3.446 15 O -0.515 6.515 16 C -0.186 4.186 17 C 0.207 3.793 18 N -0.446 5.446 19 C 0.260 3.740 20 C -0.253 4.253 21 C 0.100 3.900 22 N -0.311 5.311 23 N -0.303 5.303 24 C 0.164 3.836 25 C 0.337 3.663 26 F -0.169 7.169 27 F -0.167 7.167 28 H 0.005 0.995 29 H 0.087 0.913 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.087 0.913 33 H 0.005 0.995 34 H 0.261 0.739 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.397 0.603 38 H 0.192 0.808 39 H 0.170 0.830 40 H 0.206 0.794 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.853 3.060 20.549 20.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.056 3.944 3 C -0.190 4.190 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.011 3.989 13 N -0.351 5.351 14 C 0.337 3.663 15 O -0.392 6.392 16 C -0.197 4.197 17 C 0.021 3.979 18 N -0.155 5.155 19 C 0.035 3.965 20 C -0.283 4.283 21 C -0.078 4.078 22 N -0.135 5.135 23 N -0.074 5.074 24 C 0.044 3.956 25 C 0.282 3.718 26 F -0.149 7.149 27 F -0.148 7.148 28 H 0.024 0.976 29 H 0.106 0.894 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.106 0.894 33 H 0.024 0.976 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.233 0.767 38 H 0.209 0.791 39 H 0.187 0.813 40 H 0.222 0.778 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.194 2.203 20.820 20.970 hybrid contribution -0.068 0.051 -1.045 1.048 sum -1.262 2.255 19.775 19.943 Atomic orbital electron populations 1.21859 0.97662 0.99361 1.00131 1.18370 0.92858 0.92798 0.90420 1.21856 0.98772 0.98252 1.00131 1.20919 1.31738 1.12227 0.89772 0.92369 1.24869 0.94780 0.94887 0.98864 1.69779 1.36473 1.22686 1.23453 0.86623 0.79267 0.79800 0.82118 1.20254 1.21320 1.20250 1.21878 0.98605 0.95968 0.82481 1.46151 1.51982 1.31519 1.05417 1.17361 0.81774 0.84583 0.82612 1.90902 1.37196 1.25146 1.85995 1.21016 1.03568 1.01593 0.93501 1.23693 0.88381 0.87683 0.98172 1.68158 1.23755 1.27727 0.95899 1.20919 0.92247 0.88866 0.94501 1.21109 1.11597 1.08437 0.87159 1.23998 0.91886 0.90925 1.01025 1.77878 1.27500 1.26443 0.81683 1.46859 1.30781 1.23381 1.06343 1.21587 0.95344 0.94375 0.84344 1.19818 0.78195 0.78752 0.95059 1.93116 1.47147 1.93558 1.81122 1.93118 1.84424 1.47140 1.90105 0.97618 0.89424 0.95244 0.95261 0.89430 0.97609 0.92871 0.92012 0.92017 0.76659 0.79146 0.81261 0.77782 0.85294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 8.08 37.16 0.30 -2.48 16 2 C 0.06 1.22 0.50 -155.67 -0.08 1.14 16 3 C -0.13 -2.80 8.08 37.15 0.30 -2.50 16 4 C -0.51 -12.76 8.01 -34.44 -0.28 -13.04 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -22.80 9.35 55.43 0.52 -22.28 16 8 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 C 0.13 2.60 4.50 -4.05 -0.02 2.58 16 13 N -0.70 -11.26 4.91 -61.33 -0.30 -11.56 16 14 C 0.55 9.00 7.55 -12.44 -0.09 8.91 16 15 O -0.52 -9.89 11.45 5.29 0.06 -9.83 16 16 C -0.19 -2.54 5.86 -104.88 -0.61 -3.15 16 17 C 0.21 2.39 10.77 -16.69 -0.18 2.21 16 18 N -0.45 -5.49 10.45 -11.91 -0.12 -5.62 16 19 C 0.26 3.20 7.91 -155.33 -1.23 1.97 16 20 C -0.25 -2.36 10.91 -39.18 -0.43 -2.79 16 21 C 0.10 0.81 11.95 -17.56 -0.21 0.60 16 22 N -0.31 -3.49 12.17 30.49 0.37 -3.12 16 23 N -0.30 -3.87 3.88 -7.99 -0.03 -3.90 16 24 C 0.16 2.23 6.41 -80.77 -0.52 1.71 16 25 C 0.34 4.54 5.02 36.00 0.18 4.73 16 26 F -0.17 -2.63 15.02 2.25 0.03 -2.60 16 27 F -0.17 -2.61 15.14 2.25 0.03 -2.57 16 28 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 29 H 0.09 2.07 6.07 -51.93 -0.32 1.75 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 33 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 34 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.40 5.51 4.27 -40.82 -0.17 5.33 16 38 H 0.19 1.66 6.51 -52.48 -0.34 1.32 16 39 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.21 0.70 8.06 -52.48 -0.42 0.28 16 41 H 0.13 1.36 7.69 -51.93 -0.40 0.96 16 LS Contribution 343.00 15.07 5.17 5.17 Total: -1.00 -29.88 343.00 -6.58 -36.46 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.34 Total: 3.12 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.96 Total: 1.52 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.43 Total: -46.49 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.06 Total: -9.83 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.07 Total: -5.17 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.88 -6.58 -36.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417552718.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.585 kcal (2) G-P(sol) polarization free energy of solvation -29.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds