Wall clock time and date at job start Tue Mar 31 2020 21:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47412 * 2 1 4 4 C 1.50708 * 109.47224 * 239.99959 * 2 1 3 5 5 H 1.07992 * 119.99940 * 240.00693 * 4 2 1 6 6 C 1.37879 * 119.99594 * 59.99979 * 4 2 1 7 7 N 1.31510 * 120.00047 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99467 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47532 * 90.00075 * 8 6 4 10 10 H 1.48511 * 109.46816 * 210.00175 * 8 6 4 11 11 H 1.48501 * 109.47537 * 329.99661 * 8 6 4 12 12 C 1.50699 * 109.47008 * 120.00046 * 2 1 3 13 13 O 1.21278 * 119.99949 * 119.99853 * 12 2 1 14 14 N 1.34772 * 120.00080 * 299.99836 * 12 2 1 15 15 C 1.39196 * 120.00055 * 185.09777 * 14 12 2 16 16 C 1.39874 * 119.15479 * 174.86318 * 15 14 12 17 17 C 1.38467 * 119.58285 * 179.71793 * 16 15 14 18 18 C 1.48222 * 121.02847 * 180.02562 * 17 16 15 19 19 N 1.34124 * 126.68839 * 179.68991 * 18 17 16 20 20 N 1.28985 * 107.26046 * 179.87092 * 19 18 17 21 21 N 1.28716 * 108.97242 * 0.39810 * 20 19 18 22 22 H 0.97001 * 125.33461 * 179.74826 * 21 20 19 23 23 N 1.28872 * 109.33822 * 359.74368 * 21 20 19 24 24 C 1.41924 * 117.94163 * 0.02562 * 17 16 15 25 25 C 1.40081 * 121.26436 * 180.02562 * 24 17 16 26 26 C 1.36295 * 119.66320 * 179.97438 * 25 24 17 27 27 C 1.39257 * 120.80687 * 0.03000 * 26 25 24 28 28 C 1.36150 * 121.00831 * 359.94623 * 27 26 25 29 29 C 1.40584 * 119.76430 * 0.04552 * 28 27 26 30 30 N 1.31674 * 119.15672 * 354.59461 * 15 14 12 31 31 H 1.09007 * 109.47036 * 59.99956 * 1 2 3 32 32 H 1.09000 * 109.47412 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47124 * 300.00025 * 1 2 3 34 34 H 0.97006 * 120.00026 * 179.97438 * 7 6 4 35 35 H 0.96999 * 120.00224 * 5.10397 * 14 12 2 36 36 H 1.07998 * 120.20772 * 359.70247 * 16 15 14 37 37 H 1.08001 * 120.16904 * 359.95847 * 25 24 17 38 38 H 1.07997 * 119.60073 * 179.97438 * 26 25 24 39 39 H 1.07994 * 119.49940 * 179.97438 * 27 26 25 40 40 H 1.08004 * 120.11611 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.3428 -2.1617 -4.4119 10 1 2.4866 -0.1413 -5.1123 11 1 3.6293 -1.7583 -3.7123 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4545 15 6 2.2556 -0.8408 3.5891 16 6 1.9918 -0.2818 4.8438 17 6 2.5286 -0.8658 5.9788 18 6 2.2693 -0.3006 7.3243 19 7 2.7241 -0.7744 8.4937 20 7 2.2763 0.0019 9.4214 21 7 1.5606 0.9269 8.8837 22 1 1.1066 1.6361 9.3651 23 7 1.5418 0.7631 7.6056 24 6 3.3346 -2.0222 5.8140 25 6 3.9117 -2.6690 6.9144 26 6 4.6798 -3.7778 6.7185 27 6 4.8990 -4.2762 5.4367 28 6 4.3524 -3.6717 4.3461 29 6 3.5544 -2.5259 4.5099 30 7 3.0055 -1.9147 3.4541 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.7095 1.1619 -3.4844 35 1 1.0898 0.4931 2.5450 36 1 1.3736 0.5998 4.9268 37 1 3.7491 -2.2909 7.9129 38 1 5.1246 -4.2754 7.5675 39 1 5.5116 -5.1559 5.3058 40 1 4.5316 -4.0707 3.3586 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574470491.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:20 Heat of formation + Delta-G solvation = 165.278037 kcal Electronic energy + Delta-G solvation = -27785.901854 eV Core-core repulsion = 23797.646300 eV Total energy + Delta-G solvation = -3988.255554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.84039 -40.91778 -39.09309 -36.92628 -35.28308 -34.36803 -33.83738 -33.71212 -32.19694 -30.70094 -30.06711 -29.17794 -25.68663 -25.18940 -25.03771 -23.74596 -23.34233 -22.22807 -21.42677 -19.67133 -19.52649 -18.60960 -17.51633 -17.01193 -16.93929 -16.15343 -16.03733 -15.00908 -14.93637 -14.87955 -14.61545 -14.33382 -14.21980 -13.89484 -13.75042 -13.10858 -13.03877 -12.65152 -12.60102 -11.97075 -11.93434 -11.79764 -11.65497 -11.49847 -11.46633 -11.11950 -11.03506 -10.77361 -10.69126 -10.33587 -10.03227 -9.99416 -9.80740 -9.51228 -9.02448 -8.50960 -8.40413 -8.26927 -7.75845 -6.06477 -4.09735 0.05538 0.74395 0.90229 1.51346 1.84769 2.37133 2.94911 3.10474 3.33676 3.38329 3.39867 3.48443 3.72950 3.80915 4.28834 4.42702 4.52536 4.67397 4.75663 4.81027 5.00078 5.02887 5.15687 5.27433 5.34943 5.45141 5.61446 5.74366 5.88392 5.97829 6.07708 6.19389 6.38630 6.41806 6.53478 6.57024 6.74857 6.83899 6.86426 6.99468 7.39120 7.60942 7.75472 7.77147 7.99192 8.18027 8.41877 8.99414 9.10390 9.56208 11.01209 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016089 B = 0.002866 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.944055 B = 9767.412502 C =11400.748896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.033 3.967 3 H 0.056 0.944 4 C -0.502 4.502 5 H 0.076 0.924 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.505 3.495 13 O -0.468 6.468 14 N -0.666 5.666 15 C 0.393 3.607 16 C -0.151 4.151 17 C 0.055 3.945 18 C 0.226 3.774 19 N -0.263 5.263 20 N -0.048 5.048 21 N -0.223 5.223 22 H 0.477 0.523 23 N -0.283 5.283 24 C -0.111 4.111 25 C -0.096 4.096 26 C -0.130 4.130 27 C -0.097 4.097 28 C -0.096 4.096 29 C 0.168 3.832 30 N -0.456 5.456 31 H 0.096 0.904 32 H 0.033 0.967 33 H 0.012 0.988 34 H 0.261 0.739 35 H 0.415 0.585 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.701 0.268 24.010 24.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.012 3.988 3 H 0.074 0.926 4 C -0.541 4.541 5 H 0.094 0.906 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.293 3.707 13 O -0.334 6.334 14 N -0.314 5.314 15 C 0.147 3.853 16 C -0.177 4.177 17 C 0.044 3.956 18 C -0.054 4.054 19 N -0.136 5.136 20 N -0.043 5.043 21 N -0.070 5.070 22 H 0.332 0.668 23 N -0.134 5.134 24 C -0.116 4.116 25 C -0.114 4.114 26 C -0.149 4.149 27 C -0.117 4.117 28 C -0.115 4.115 29 C 0.044 3.956 30 N -0.174 5.174 31 H 0.114 0.886 32 H 0.053 0.947 33 H 0.031 0.969 34 H 0.071 0.929 35 H 0.252 0.748 36 H 0.166 0.834 37 H 0.172 0.828 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.376 -0.688 23.481 23.531 hybrid contribution -0.646 0.930 -0.102 1.137 sum 0.730 0.242 23.379 23.392 Atomic orbital electron populations 1.21792 0.96377 1.00091 1.01113 1.18932 0.94244 0.96935 0.88665 0.92595 1.21131 1.31193 1.12916 0.88825 0.90604 1.24933 0.95039 0.95021 0.99140 1.69860 1.37066 1.23008 1.23653 0.86431 0.79530 0.79232 0.81928 1.20633 1.21302 1.19656 1.22435 0.79634 0.85032 0.83551 1.90653 1.33723 1.23831 1.85221 1.44451 1.46520 1.35843 1.04557 1.18633 0.90957 0.89560 0.86128 1.21629 1.03157 1.02275 0.90618 1.17143 0.97848 0.94435 0.86191 1.23347 0.96133 0.91233 0.94662 1.75961 1.20451 1.20651 0.96545 1.78931 1.05638 0.96909 1.22772 1.47717 1.33294 1.22835 1.03129 0.66804 1.75006 1.21897 1.19570 0.96971 1.18539 1.01238 0.96401 0.95379 1.21595 0.95552 0.95030 0.99270 1.20888 0.99802 0.97087 0.97130 1.20923 0.98836 0.99608 0.92310 1.20835 0.96556 0.93997 1.00093 1.18738 0.95358 0.94935 0.86524 1.68156 1.10231 1.07717 1.31266 0.88566 0.94742 0.96900 0.92895 0.74846 0.83378 0.82777 0.85777 0.85489 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.86 37.16 0.33 -2.65 16 2 C 0.03 0.80 2.65 -92.92 -0.25 0.56 16 3 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 4 C -0.50 -13.96 8.37 -34.44 -0.29 -14.25 16 5 H 0.08 2.24 6.75 -52.49 -0.35 1.88 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -24.65 11.32 55.43 0.63 -24.03 16 8 Si 0.90 21.63 29.54 -169.99 -5.02 16.60 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.50 11.35 7.11 -10.99 -0.08 11.27 16 13 O -0.47 -12.14 13.69 5.56 0.08 -12.07 16 14 N -0.67 -11.63 5.30 -11.42 -0.06 -11.70 16 15 C 0.39 6.73 7.42 -155.17 -1.15 5.58 16 16 C -0.15 -2.03 9.57 -38.89 -0.37 -2.40 16 17 C 0.05 0.74 5.94 -104.30 -0.62 0.12 16 18 C 0.23 2.66 7.86 -156.26 -1.23 1.44 16 19 N -0.26 -3.00 9.38 32.13 0.30 -2.70 16 20 N -0.05 -0.44 13.47 60.35 0.81 0.38 16 21 N -0.22 -1.48 7.90 60.35 0.48 -1.00 16 22 H 0.48 0.76 8.96 -340.36 -3.05 -2.30 16 23 N -0.28 -2.72 12.16 32.14 0.39 -2.33 16 24 C -0.11 -1.62 5.76 -106.55 -0.61 -2.23 16 25 C -0.10 -1.20 9.35 -39.59 -0.37 -1.57 16 26 C -0.13 -1.43 9.96 -39.90 -0.40 -1.83 16 27 C -0.10 -1.11 9.94 -39.95 -0.40 -1.51 16 28 C -0.10 -1.41 9.98 -39.45 -0.39 -1.80 16 29 C 0.17 2.82 6.60 -84.89 -0.56 2.26 16 30 N -0.46 -8.88 7.77 -10.20 -0.08 -8.95 16 31 H 0.10 2.34 6.07 -51.93 -0.32 2.03 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.01 0.22 7.46 -51.93 -0.39 -0.17 16 34 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.41 5.67 7.96 -40.82 -0.33 5.35 16 36 H 0.15 1.55 7.94 -52.49 -0.42 1.14 16 37 H 0.16 1.81 4.94 -52.49 -0.26 1.55 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.14 2.06 8.06 -52.48 -0.42 1.64 16 LS Contribution 345.38 15.07 5.20 5.20 Total: -1.00 -34.58 345.38 -10.11 -44.68 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.36 Total: 1.39 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -6.48 Total: -5.49 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 2.47 Total: -50.33 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.08 Total: -12.07 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.58 -10.11 -44.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574470491.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.963 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds