Wall clock time and date at job start Tue Mar 31 2020 21:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47412 * 2 1 4 4 C 1.50708 * 109.47224 * 239.99959 * 2 1 3 5 5 H 1.07992 * 119.99940 * 240.00693 * 4 2 1 6 6 C 1.37879 * 119.99594 * 59.99979 * 4 2 1 7 7 N 1.31510 * 120.00047 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99467 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47532 * 90.00075 * 8 6 4 10 10 H 1.48511 * 109.46816 * 210.00175 * 8 6 4 11 11 H 1.48501 * 109.47537 * 329.99661 * 8 6 4 12 12 C 1.50699 * 109.47008 * 120.00046 * 2 1 3 13 13 O 1.21278 * 119.99949 * 119.99853 * 12 2 1 14 14 N 1.34772 * 120.00080 * 299.99836 * 12 2 1 15 15 C 1.39196 * 120.00055 * 185.09777 * 14 12 2 16 16 C 1.39874 * 119.15479 * 174.86318 * 15 14 12 17 17 C 1.38467 * 119.58285 * 179.71793 * 16 15 14 18 18 C 1.48222 * 121.02847 * 180.02562 * 17 16 15 19 19 N 1.34124 * 126.68839 * 179.68991 * 18 17 16 20 20 N 1.28985 * 107.26046 * 179.87092 * 19 18 17 21 21 N 1.28716 * 108.97242 * 0.39810 * 20 19 18 22 22 H 0.97001 * 125.33461 * 179.74826 * 21 20 19 23 23 N 1.28872 * 109.33822 * 359.74368 * 21 20 19 24 24 C 1.41924 * 117.94163 * 0.02562 * 17 16 15 25 25 C 1.40081 * 121.26436 * 180.02562 * 24 17 16 26 26 C 1.36295 * 119.66320 * 179.97438 * 25 24 17 27 27 C 1.39257 * 120.80687 * 0.03000 * 26 25 24 28 28 C 1.36150 * 121.00831 * 359.94623 * 27 26 25 29 29 C 1.40584 * 119.76430 * 0.04552 * 28 27 26 30 30 N 1.31674 * 119.15672 * 354.59461 * 15 14 12 31 31 H 1.09007 * 109.47036 * 59.99956 * 1 2 3 32 32 H 1.09000 * 109.47412 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47124 * 300.00025 * 1 2 3 34 34 H 0.97006 * 120.00026 * 179.97438 * 7 6 4 35 35 H 0.96999 * 120.00224 * 5.10397 * 14 12 2 36 36 H 1.07998 * 120.20772 * 359.70247 * 16 15 14 37 37 H 1.08001 * 120.16904 * 359.95847 * 25 24 17 38 38 H 1.07997 * 119.60073 * 179.97438 * 26 25 24 39 39 H 1.07994 * 119.49940 * 179.97438 * 27 26 25 40 40 H 1.08004 * 120.11611 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.3428 -2.1617 -4.4119 10 1 2.4866 -0.1413 -5.1123 11 1 3.6293 -1.7583 -3.7123 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4545 15 6 2.2556 -0.8408 3.5891 16 6 1.9918 -0.2818 4.8438 17 6 2.5286 -0.8658 5.9788 18 6 2.2693 -0.3006 7.3243 19 7 2.7241 -0.7744 8.4937 20 7 2.2763 0.0019 9.4214 21 7 1.5606 0.9269 8.8837 22 1 1.1066 1.6361 9.3651 23 7 1.5418 0.7631 7.6056 24 6 3.3346 -2.0222 5.8140 25 6 3.9117 -2.6690 6.9144 26 6 4.6798 -3.7778 6.7185 27 6 4.8990 -4.2762 5.4367 28 6 4.3524 -3.6717 4.3461 29 6 3.5544 -2.5259 4.5099 30 7 3.0055 -1.9147 3.4541 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.7095 1.1619 -3.4844 35 1 1.0898 0.4931 2.5450 36 1 1.3736 0.5998 4.9268 37 1 3.7491 -2.2909 7.9129 38 1 5.1246 -4.2754 7.5675 39 1 5.5116 -5.1559 5.3058 40 1 4.5316 -4.0707 3.3586 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574470491.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:19 Heat of formation + Delta-G solvation = 142.101278 kcal Electronic energy + Delta-G solvation = -27786.906874 eV Core-core repulsion = 23797.646300 eV Total energy + Delta-G solvation = -3989.260573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.59254 -42.11030 -40.60674 -38.16099 -36.24684 -35.76271 -35.33439 -35.04710 -33.09345 -32.56280 -31.13603 -30.40682 -27.21766 -26.69596 -25.93476 -25.03307 -24.35845 -23.64690 -22.52768 -21.13289 -20.43866 -19.69691 -18.38858 -18.25108 -18.16141 -17.97058 -17.49729 -16.49068 -16.27554 -16.17083 -15.95368 -15.48679 -15.26559 -15.20865 -14.95450 -14.76954 -14.46927 -14.01416 -13.56710 -13.40912 -13.06961 -12.96729 -12.82480 -12.72037 -12.65688 -12.57777 -12.43375 -12.42933 -12.19694 -12.03264 -11.99586 -11.17716 -11.05464 -10.95462 -10.91923 -10.50899 -9.93140 -9.46903 -8.96085 -8.15484 -6.25172 -0.95566 -0.21145 0.01389 0.56186 1.29245 1.33886 1.41104 1.42023 1.53590 1.73117 1.90146 2.23148 2.40370 2.46187 2.94040 3.13427 3.15670 3.37709 3.64961 3.69516 3.82406 4.04946 4.16062 4.22132 4.32826 4.41602 4.46639 4.66316 4.74648 4.75723 4.91567 4.93351 5.01423 5.15447 5.29912 5.43705 5.49222 5.54124 5.57890 5.64919 5.75876 5.88448 5.97525 6.17355 6.39504 6.81680 6.99376 7.06975 7.39102 7.51682 8.90335 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016089 B = 0.002866 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.944055 B = 9767.412502 C =11400.748896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.031 3.969 3 H 0.050 0.950 4 C -0.530 4.530 5 H 0.048 0.952 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.953 3.047 9 H -0.275 1.275 10 H -0.274 1.274 11 H -0.280 1.280 12 C 0.511 3.489 13 O -0.514 6.514 14 N -0.651 5.651 15 C 0.372 3.628 16 C -0.142 4.142 17 C 0.059 3.941 18 C 0.210 3.790 19 N -0.279 5.279 20 N -0.046 5.046 21 N -0.191 5.191 22 H 0.498 0.502 23 N -0.276 5.276 24 C -0.117 4.117 25 C -0.100 4.100 26 C -0.119 4.119 27 C -0.078 4.078 28 C -0.127 4.127 29 C 0.138 3.862 30 N -0.506 5.506 31 H 0.074 0.926 32 H 0.022 0.978 33 H 0.058 0.942 34 H 0.265 0.735 35 H 0.432 0.568 36 H 0.180 0.820 37 H 0.167 0.833 38 H 0.164 0.836 39 H 0.161 0.839 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.435 0.773 27.027 27.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.010 3.990 3 H 0.067 0.933 4 C -0.568 4.568 5 H 0.066 0.934 6 C -0.176 4.176 7 N -0.548 5.548 8 Si 0.779 3.221 9 H -0.200 1.200 10 H -0.199 1.199 11 H -0.206 1.206 12 C 0.299 3.701 13 O -0.385 6.385 14 N -0.301 5.301 15 C 0.127 3.873 16 C -0.168 4.168 17 C 0.048 3.952 18 C -0.069 4.069 19 N -0.151 5.151 20 N -0.041 5.041 21 N -0.043 5.043 22 H 0.358 0.642 23 N -0.129 5.129 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.137 4.137 27 C -0.097 4.097 28 C -0.146 4.146 29 C 0.016 3.984 30 N -0.223 5.223 31 H 0.093 0.907 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.273 0.727 36 H 0.197 0.803 37 H 0.184 0.816 38 H 0.181 0.819 39 H 0.179 0.821 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.081 -0.144 26.567 26.590 hybrid contribution -0.524 0.773 -0.804 1.232 sum 0.557 0.629 25.763 25.777 Atomic orbital electron populations 1.21610 0.94665 0.99626 1.02231 1.18841 0.95570 0.96077 0.88556 0.93271 1.21267 1.31721 1.12772 0.91068 0.93415 1.25526 0.95169 0.95709 1.01228 1.69928 1.37120 1.23378 1.24365 0.85632 0.78600 0.78585 0.79287 1.20017 1.19888 1.20574 1.22012 0.79040 0.84291 0.84733 1.90632 1.35866 1.25750 1.86213 1.43900 1.46619 1.36080 1.03460 1.18783 0.91708 0.89946 0.86829 1.21678 1.03294 1.02887 0.88911 1.17241 0.96859 0.93861 0.87210 1.23022 0.97590 0.92253 0.94081 1.75907 1.21148 1.21503 0.96552 1.78889 1.05856 0.97131 1.22190 1.47790 1.31773 1.22428 1.02331 0.64189 1.74962 1.21144 1.18667 0.98093 1.18734 1.01471 0.96948 0.95040 1.21830 0.95572 0.95450 0.99043 1.21354 0.98244 0.96118 0.97955 1.21301 0.97268 0.99645 0.91535 1.20931 0.98278 0.94702 1.00692 1.19010 0.96500 0.95891 0.87017 1.67986 1.11575 1.09244 1.33517 0.90738 0.95878 0.92349 0.92524 0.72739 0.80300 0.81639 0.81870 0.82142 0.85974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 8.86 71.98 0.64 -4.81 16 2 C 0.03 1.53 2.65 -12.28 -0.03 1.50 16 3 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 4 C -0.53 -30.68 8.37 25.60 0.21 -30.47 16 5 H 0.05 2.98 6.75 -2.91 -0.02 2.96 16 6 C 0.02 1.29 5.30 84.66 0.45 1.74 16 7 N -0.91 -50.40 11.32 21.45 0.24 -50.16 16 8 Si 0.95 45.15 29.54 68.60 2.03 47.18 16 9 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 12 C 0.51 23.93 7.11 87.66 0.62 24.55 16 13 O -0.51 -28.41 13.69 -3.02 -0.04 -28.45 16 14 N -0.65 -23.12 5.30 -308.42 -1.64 -24.75 16 15 C 0.37 13.04 7.42 133.39 0.99 14.03 16 16 C -0.14 -3.72 9.57 22.72 0.22 -3.50 16 17 C 0.06 1.55 5.94 -19.66 -0.12 1.43 16 18 C 0.21 4.49 7.86 137.25 1.08 5.57 16 19 N -0.28 -5.67 9.38 -52.27 -0.49 -6.16 16 20 N -0.05 -0.71 13.47 37.02 0.50 -0.21 16 21 N -0.19 -1.90 7.90 37.02 0.29 -1.61 16 22 H 0.50 -0.25 8.96 -347.53 -3.12 -3.37 16 23 N -0.28 -4.48 12.16 -52.22 -0.63 -5.12 16 24 C -0.12 -3.38 5.76 -21.11 -0.12 -3.50 16 25 C -0.10 -2.32 9.35 22.26 0.21 -2.11 16 26 C -0.12 -2.26 9.96 22.06 0.22 -2.04 16 27 C -0.08 -1.67 9.94 22.03 0.22 -1.45 16 28 C -0.13 -3.86 9.98 22.36 0.22 -3.64 16 29 C 0.14 4.81 6.60 40.23 0.27 5.07 16 30 N -0.51 -20.73 7.77 -186.19 -1.45 -22.18 16 31 H 0.07 3.64 6.07 -2.38 -0.01 3.63 16 32 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.99 7.46 -2.39 -0.02 1.97 16 34 H 0.27 13.95 8.31 -92.70 -0.77 13.17 16 35 H 0.43 11.49 7.96 -92.71 -0.74 10.75 16 36 H 0.18 3.35 7.94 -2.91 -0.02 3.33 16 37 H 0.17 3.48 4.94 -2.91 -0.01 3.47 16 38 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 39 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 40 H 0.12 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -79.24 345.38 1.18 -78.06 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -2.70 Total: 11.01 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 5.07 Total: 2.38 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -3.17 Total: -110.19 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.04 Total: -28.45 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -79.24 1.18 -78.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574470491.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.162 kcal (2) G-P(sol) polarization free energy of solvation -79.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds