Wall clock time and date at job start Tue Mar 31 2020 20:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.47094 * 2 1 4 4 C 1.46891 * 111.00371 * 300.00463 * 3 2 1 5 5 C 1.53001 * 109.47430 * 179.97438 * 4 3 2 6 6 O 1.42905 * 109.47016 * 64.99714 * 5 4 3 7 7 C 1.42899 * 114.00005 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47227 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00006 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00102 * 180.02562 * 8 7 6 11 11 N 1.31518 * 120.00042 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00102 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46903 * 90.00168 * 12 10 8 14 14 H 1.48504 * 109.46984 * 210.00034 * 12 10 8 15 15 H 1.48491 * 109.47076 * 329.99771 * 12 10 8 16 16 C 1.50706 * 109.47238 * 240.00614 * 2 1 3 17 17 O 1.20820 * 119.99623 * 334.99578 * 16 2 1 18 18 O 1.34224 * 120.00202 * 154.99840 * 16 2 1 19 19 C 1.50697 * 109.47466 * 120.00265 * 2 1 3 20 20 C 1.38257 * 120.00257 * 239.72946 * 19 2 1 21 21 C 1.38217 * 120.00044 * 179.76621 * 20 19 2 22 22 C 1.38252 * 119.99651 * 0.50241 * 21 20 19 23 23 C 1.38217 * 120.00422 * 359.75327 * 22 21 20 24 24 N 1.48020 * 120.00071 * 179.97438 * 23 22 21 25 25 O 1.21800 * 120.00019 * 180.02562 * 24 23 22 26 26 O 1.21806 * 120.00069 * 0.02562 * 24 23 22 27 27 C 1.38211 * 119.99783 * 59.99985 * 19 2 1 28 28 H 1.09002 * 109.47153 * 299.99508 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99681 * 1 2 3 31 31 H 1.00901 * 111.00140 * 176.04454 * 3 2 1 32 32 H 1.09000 * 109.46944 * 299.99658 * 4 3 2 33 33 H 1.08997 * 109.47539 * 59.99888 * 4 3 2 34 34 H 1.08993 * 109.47297 * 184.99871 * 5 4 3 35 35 H 1.09000 * 109.46848 * 305.00080 * 5 4 3 36 36 H 1.09005 * 109.47209 * 300.00625 * 7 6 5 37 37 H 1.09004 * 109.47113 * 60.00052 * 7 6 5 38 38 H 0.96998 * 120.00520 * 179.97438 * 11 10 8 39 39 H 0.96701 * 116.99906 * 179.97438 * 18 16 2 40 40 H 1.07996 * 119.99780 * 359.97438 * 20 19 2 41 41 H 1.07993 * 119.99781 * 180.22950 * 21 20 19 42 42 H 1.08002 * 120.00045 * 179.72651 * 22 21 20 43 43 H 1.08005 * 120.00138 * 0.02562 * 27 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5486 2.1100 -1.1875 5 6 2.0771 3.5454 -1.1518 6 8 3.5022 3.5310 -1.2582 7 6 4.0999 4.8287 -1.2342 8 6 5.5963 4.6948 -1.3515 9 1 6.0459 3.7165 -1.4363 10 6 6.3914 5.8212 -1.3505 11 7 5.8440 7.0125 -1.2467 12 14 8.2463 5.6552 -1.4966 13 1 8.6346 5.6854 -2.9296 14 1 8.9017 6.7803 -0.7823 15 1 8.6771 4.3683 -0.8938 16 6 2.0324 -0.7103 -1.2306 17 8 1.3396 -1.5361 -1.7765 18 8 3.2493 -0.4256 -1.7201 19 6 2.0324 -0.7104 1.2304 20 6 2.8319 -0.0402 2.1376 21 6 3.2887 -0.6904 3.2685 22 6 2.9547 -2.0141 3.4872 23 6 2.1597 -2.6857 2.5776 24 7 1.8026 -4.1030 2.8115 25 8 1.1025 -4.6949 2.0096 26 8 2.2089 -4.6773 3.8058 27 6 1.6985 -2.0337 1.4490 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 3.0262 1.4127 0.0650 32 1 1.9121 1.6108 -2.0858 33 1 0.4588 2.1247 -1.1958 34 1 1.6563 4.1083 -1.9849 35 1 1.7877 4.0158 -0.2122 36 1 3.7209 5.4188 -2.0687 37 1 3.8523 5.3255 -0.2960 38 1 6.4034 7.8050 -1.2456 39 1 3.5281 -0.9072 -2.5109 40 1 3.0967 0.9923 1.9644 41 1 3.9101 -0.1658 3.9791 42 1 3.3152 -2.5235 4.3687 43 1 1.0779 -2.5587 0.7379 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593272178.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:29 Heat of formation + Delta-G solvation = -108.380867 kcal Electronic energy + Delta-G solvation = -29420.333608 eV Core-core repulsion = 25048.316892 eV Total energy + Delta-G solvation = -4372.016716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.44111 -41.33820 -39.62583 -37.58827 -36.80097 -36.50860 -36.22145 -33.12617 -32.45148 -32.30360 -29.99898 -28.45089 -27.01717 -26.63967 -25.19025 -23.65283 -22.61601 -22.46343 -21.71474 -20.47956 -19.22392 -18.88784 -18.26899 -17.76127 -17.45349 -17.04097 -16.57863 -16.22652 -15.95949 -15.70505 -15.32680 -15.08528 -14.57938 -14.45942 -14.24252 -13.68163 -13.48030 -13.37597 -13.04812 -12.87874 -12.50680 -12.34280 -12.20216 -11.91410 -11.79539 -11.75071 -11.66467 -11.43837 -11.36501 -11.35808 -11.06562 -10.90029 -10.82001 -10.72351 -10.13316 -9.94608 -9.68912 -9.21369 -8.94930 -8.84175 -8.29034 -6.19827 -4.22099 -0.44181 0.44046 1.06878 1.12238 1.83207 2.58020 2.94500 3.23231 3.29040 3.33028 3.51158 3.95324 4.07211 4.25123 4.33765 4.42217 4.50313 4.56952 4.69524 4.76518 4.95729 5.09868 5.14996 5.16928 5.29042 5.35459 5.35956 5.47393 5.65244 5.68491 5.73237 5.86329 5.87617 5.99581 6.11151 6.17106 6.22942 6.59478 6.98842 7.08360 7.32517 7.39417 7.58423 7.69362 8.04698 8.44429 8.90448 9.43186 10.91522 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.014162 B = 0.002716 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.688889 B =10307.658153 C =11244.802092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.173 3.827 3 N -0.660 5.660 4 C 0.057 3.943 5 C 0.063 3.937 6 O -0.397 6.397 7 C 0.198 3.802 8 C -0.516 4.516 9 H 0.066 0.934 10 C 0.057 3.943 11 N -0.898 5.898 12 Si 0.907 3.093 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.272 1.272 16 C 0.452 3.548 17 O -0.509 6.509 18 O -0.502 6.502 19 C -0.080 4.080 20 C -0.033 4.033 21 C -0.114 4.114 22 C -0.051 4.051 23 C -0.047 4.047 24 N 0.030 4.970 25 O -0.161 6.161 26 O -0.161 6.161 27 C -0.047 4.047 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.370 0.630 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.004 0.996 37 H 0.006 0.994 38 H 0.265 0.735 39 H 0.412 0.588 40 H 0.163 0.837 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.489 -14.918 6.921 18.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.079 3.921 3 N -0.295 5.295 4 C -0.072 4.072 5 C -0.015 4.015 6 O -0.317 6.317 7 C 0.124 3.876 8 C -0.554 4.554 9 H 0.084 0.916 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.734 3.266 13 H -0.205 1.205 14 H -0.211 1.211 15 H -0.196 1.196 16 C 0.291 3.709 17 O -0.396 6.396 18 O -0.314 6.314 19 C -0.081 4.081 20 C -0.051 4.051 21 C -0.133 4.133 22 C -0.070 4.070 23 C -0.130 4.130 24 N 0.549 4.451 25 O -0.376 6.376 26 O -0.377 6.377 27 C -0.066 4.066 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.193 0.807 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.022 0.978 37 H 0.024 0.976 38 H 0.074 0.926 39 H 0.272 0.728 40 H 0.180 0.820 41 H 0.172 0.828 42 H 0.172 0.828 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.963 -13.979 7.382 18.686 hybrid contribution 1.464 -0.749 -1.331 2.116 sum -8.499 -14.728 6.051 18.049 Atomic orbital electron populations 1.21914 0.89053 1.03837 1.04334 1.19768 0.97517 0.88502 0.86264 1.60762 1.19327 1.07986 1.41457 1.22196 0.99767 0.94630 0.90559 1.22244 0.85194 0.94010 1.00002 1.87811 1.16030 1.33181 1.94707 1.20185 0.93193 0.78799 0.95462 1.21025 0.90269 0.93516 1.50588 0.91590 1.24946 0.99510 0.94884 0.95114 1.69954 1.35875 0.97700 1.50116 0.86353 0.84127 0.77832 0.78268 1.20492 1.21055 1.19633 1.24713 0.79308 0.80533 0.86340 1.90717 1.56961 1.32325 1.59571 1.84611 1.34124 1.65403 1.47251 1.19302 0.99685 0.92470 0.96673 1.21746 0.90467 1.01753 0.91154 1.21335 1.00464 0.93028 0.98446 1.21177 0.93062 0.94828 0.97941 1.20971 1.08593 0.82326 1.01081 1.43605 0.98627 1.03077 0.99760 1.94564 1.34422 1.67060 1.41592 1.94533 1.56209 1.68421 1.18504 1.20884 0.96668 0.94035 0.95054 0.89531 0.90597 0.90756 0.80684 0.93932 0.89692 0.93679 0.93192 0.97813 0.97571 0.92587 0.72825 0.81956 0.82781 0.82764 0.82727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 7.58 37.16 0.28 -0.93 16 2 C 0.17 1.80 0.76 -133.90 -0.10 1.70 16 3 N -0.66 -7.59 4.99 -102.33 -0.51 -8.10 16 4 C 0.06 0.71 5.37 -3.83 -0.02 0.69 16 5 C 0.06 1.02 6.28 37.16 0.23 1.25 16 6 O -0.40 -8.46 9.85 -35.23 -0.35 -8.81 16 7 C 0.20 5.04 5.69 36.00 0.20 5.24 16 8 C -0.52 -14.30 9.43 -34.44 -0.32 -14.63 16 9 H 0.07 1.81 7.81 -52.48 -0.41 1.40 16 10 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 11 N -0.90 -25.83 13.29 55.43 0.74 -25.09 16 12 Si 0.91 20.92 29.54 -169.99 -5.02 15.89 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 16 C 0.45 5.37 5.53 36.01 0.20 5.57 16 17 O -0.51 -6.99 16.85 -18.75 -0.32 -7.30 16 18 O -0.50 -5.67 12.23 -39.24 -0.48 -6.15 16 19 C -0.08 -0.77 4.76 -104.63 -0.50 -1.27 16 20 C -0.03 -0.28 9.14 -39.58 -0.36 -0.65 16 21 C -0.11 -0.82 10.05 -39.58 -0.40 -1.21 16 22 C -0.05 -0.42 9.56 -39.58 -0.38 -0.80 16 23 C -0.05 -0.49 6.85 -79.95 -0.55 -1.04 16 24 N 0.03 0.38 4.45 33.96 0.15 0.53 16 25 O -0.16 -2.19 18.45 -29.46 -0.54 -2.74 16 26 O -0.16 -2.06 18.45 -29.46 -0.54 -2.60 16 27 C -0.05 -0.48 8.33 -39.58 -0.33 -0.81 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.68 7.12 -51.93 -0.37 0.31 16 30 H 0.07 0.66 6.40 -51.93 -0.33 0.33 16 31 H 0.37 4.81 6.76 -39.29 -0.27 4.55 16 32 H 0.04 0.58 6.64 -51.93 -0.34 0.23 16 33 H 0.08 0.87 6.30 -51.93 -0.33 0.55 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 37 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 39 H 0.41 3.09 9.10 45.56 0.41 3.51 16 40 H 0.16 1.39 6.40 -52.49 -0.34 1.05 16 41 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.15 1.01 7.61 -52.49 -0.40 0.61 16 43 H 0.16 1.65 7.13 -52.48 -0.37 1.27 16 LS Contribution 372.56 15.07 5.61 5.61 Total: -1.00 -32.85 372.56 -7.81 -40.67 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -4.42 Total: 3.50 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -2.14 Total: -5.41 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.38 Total: -32.67 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -2.23 Total: -27.60 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.85 -7.81 -40.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593272178.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.713 kcal (2) G-P(sol) polarization free energy of solvation -32.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds