Wall clock time and date at job start Tue Mar 31 2020 20:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.47216 * 2 1 4 4 C 1.52998 * 109.47333 * 239.99683 * 2 1 3 5 5 N 1.46502 * 109.46781 * 60.00224 * 4 2 1 6 6 C 1.35772 * 119.62465 * 90.00351 * 5 4 2 7 7 C 1.35343 * 120.69993 * 180.02562 * 6 5 4 8 8 C 1.40198 * 119.95291 * 359.97438 * 7 6 5 9 9 C 1.36403 * 119.26348 * 359.97438 * 8 7 6 10 10 C 1.34656 * 119.62622 * 269.72673 * 5 4 2 11 11 O 1.22058 * 119.98480 * 359.97438 * 10 5 4 12 12 C 1.50696 * 109.47047 * 119.99689 * 2 1 3 13 13 O 1.21292 * 119.99876 * 101.62209 * 12 2 1 14 14 N 1.34772 * 120.00377 * 281.63099 * 12 2 1 15 15 C 1.37099 * 120.00029 * 4.90770 * 14 12 2 16 16 H 1.08001 * 120.00138 * 315.71032 * 15 14 12 17 17 C 1.38950 * 120.00299 * 135.70929 * 15 14 12 18 18 N 1.31408 * 120.00101 * 346.39561 * 17 15 14 19 19 Si 1.86798 * 120.00041 * 166.39450 * 17 15 14 20 20 H 1.48499 * 109.47269 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47163 * 119.99871 * 19 17 15 22 22 H 1.48501 * 109.47256 * 239.99879 * 19 17 15 23 23 C 1.46500 * 120.00431 * 184.91048 * 14 12 2 24 24 C 1.53002 * 109.47347 * 84.53021 * 23 14 12 25 25 C 1.50704 * 109.47197 * 180.02562 * 24 23 14 26 26 O 1.20825 * 119.99804 * 0.02562 * 25 24 23 27 27 O 1.34227 * 119.99629 * 179.97438 * 25 24 23 28 28 H 1.09007 * 109.46996 * 60.00171 * 1 2 3 29 29 H 1.08998 * 109.47191 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47274 * 300.00354 * 1 2 3 31 31 H 0.96703 * 113.99644 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47087 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.47213 * 300.00094 * 4 2 1 34 34 H 1.07998 * 119.64655 * 359.97438 * 6 5 4 35 35 H 1.08005 * 120.02130 * 179.97438 * 7 6 5 36 36 H 1.07996 * 120.36938 * 179.97438 * 8 7 6 37 37 H 1.07991 * 120.34634 * 180.02562 * 9 8 7 38 38 H 0.96998 * 120.00180 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.47454 * 204.53375 * 23 14 12 40 40 H 1.09000 * 109.46775 * 324.53262 * 23 14 12 41 41 H 1.08995 * 109.46730 * 300.00594 * 24 23 14 42 42 H 1.09000 * 109.46986 * 60.00370 * 24 23 14 43 43 H 0.96701 * 116.99479 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.5517 -0.0307 -2.4454 6 6 2.2917 0.9671 -2.9934 7 6 1.8612 1.6200 -4.0979 8 6 0.6393 1.2671 -4.6880 9 6 -0.1022 0.2638 -4.1366 10 6 0.3767 -0.3964 -2.9921 11 8 -0.2745 -1.2990 -2.4911 12 6 2.0323 -0.7103 1.2305 13 8 2.4339 -1.8520 1.1502 14 7 2.0351 -0.0772 2.4202 15 6 1.4888 1.1753 2.5315 16 1 1.6975 1.9241 1.7816 17 6 0.6666 1.4816 3.6089 18 7 0.1954 0.5196 4.3701 19 14 0.2312 3.2607 3.9755 20 1 0.8834 4.1458 2.9772 21 1 -1.2418 3.4349 3.9030 22 1 0.7052 3.6160 5.3372 23 6 2.6219 -0.7272 3.5947 24 6 4.1317 -0.4798 3.6135 25 6 4.7354 -1.1491 4.8213 26 8 4.0304 -1.7615 5.5881 27 8 6.0563 -1.0656 5.0446 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.9704 1.4236 0.0004 32 1 3.1300 -0.7209 -1.2494 33 1 1.6767 -1.7489 -1.2491 34 1 3.2335 1.2431 -2.5426 35 1 2.4585 2.4123 -4.5245 36 1 0.2891 1.7839 -5.5692 37 1 -1.0458 -0.0226 -4.5770 38 1 -0.3782 0.7334 5.1225 39 1 2.1749 -0.3152 4.4994 40 1 2.4299 -1.7993 3.5503 41 1 4.5786 -0.8919 2.7088 42 1 4.3236 0.5922 3.6578 43 1 6.3972 -1.5107 5.8325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593419312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:01 Heat of formation + Delta-G solvation = -160.060477 kcal Electronic energy + Delta-G solvation = -30845.823452 eV Core-core repulsion = 26471.565740 eV Total energy + Delta-G solvation = -4374.257712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.36722 -39.92905 -39.20551 -36.74941 -36.47318 -35.84196 -35.14475 -34.10309 -32.04921 -31.02068 -30.35213 -29.64567 -26.89057 -25.19872 -24.68625 -23.79721 -22.77529 -21.57600 -20.37363 -19.24232 -18.20632 -17.83704 -17.22833 -17.06152 -16.55301 -16.15173 -16.06897 -15.79016 -15.49522 -14.92651 -14.59819 -14.53667 -14.23798 -14.12307 -13.99589 -13.41527 -13.09031 -12.77119 -12.58162 -12.35760 -12.10380 -11.93763 -11.85013 -11.69009 -11.56121 -11.46099 -11.31229 -11.25542 -11.19579 -11.05054 -10.82113 -10.38618 -10.31635 -10.21653 -9.99559 -9.71738 -9.60656 -9.14363 -8.44955 -7.81095 -7.53728 -6.38465 -4.17758 0.93551 1.99105 2.59166 2.76115 3.09217 3.21384 3.24849 3.30044 3.58724 3.78270 4.10095 4.44015 4.65446 4.67744 4.79113 4.92503 4.94427 5.15133 5.22722 5.28471 5.39781 5.49489 5.66055 5.75500 5.88958 5.98352 6.02741 6.07567 6.15048 6.22108 6.31137 6.43184 6.58712 6.61970 6.73591 6.78247 7.00780 7.24048 7.24461 7.56206 7.82036 7.92183 8.22875 8.23940 8.40441 9.01140 9.29651 9.74511 10.64851 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.012236 B = 0.004034 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.869639 B = 6940.156396 C = 8098.857508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.133 3.867 3 O -0.529 6.529 4 C 0.077 3.923 5 N -0.482 5.482 6 C 0.155 3.845 7 C -0.249 4.249 8 C -0.017 4.017 9 C -0.251 4.251 10 C 0.511 3.489 11 O -0.545 6.545 12 C 0.451 3.549 13 O -0.598 6.598 14 N -0.420 5.420 15 C -0.350 4.350 16 H 0.124 0.876 17 C 0.042 3.958 18 N -0.861 5.861 19 Si 0.915 3.085 20 H -0.265 1.265 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.128 3.872 24 C -0.124 4.124 25 C 0.482 3.518 26 O -0.512 6.512 27 O -0.525 6.525 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.364 0.636 32 H 0.092 0.908 33 H 0.117 0.883 34 H 0.157 0.843 35 H 0.140 0.860 36 H 0.129 0.871 37 H 0.143 0.857 38 H 0.269 0.731 39 H 0.111 0.889 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.399 5.123 -11.234 14.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.088 3.912 3 O -0.333 6.333 4 C -0.045 4.045 5 N -0.191 5.191 6 C 0.026 3.974 7 C -0.272 4.272 8 C -0.039 4.039 9 C -0.273 4.273 10 C 0.313 3.687 11 O -0.427 6.427 12 C 0.238 3.762 13 O -0.485 6.485 14 N -0.137 5.137 15 C -0.477 4.477 16 H 0.141 0.859 17 C -0.165 4.165 18 N -0.497 5.497 19 Si 0.742 3.258 20 H -0.189 1.189 21 H -0.208 1.208 22 H -0.208 1.208 23 C 0.004 3.996 24 C -0.163 4.163 25 C 0.324 3.676 26 O -0.400 6.400 27 O -0.337 6.337 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.211 0.789 32 H 0.110 0.890 33 H 0.136 0.864 34 H 0.175 0.825 35 H 0.158 0.842 36 H 0.147 0.853 37 H 0.161 0.839 38 H 0.080 0.920 39 H 0.129 0.871 40 H 0.083 0.917 41 H 0.114 0.886 42 H 0.123 0.877 43 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 7.031 4.085 -10.837 13.549 hybrid contribution 0.559 0.610 0.905 1.226 sum 7.590 4.695 -9.933 13.353 Atomic orbital electron populations 1.21634 0.90282 1.02931 1.03102 1.21332 0.97433 0.81929 0.90487 1.86727 1.25411 1.24894 1.96265 1.22574 0.99746 0.99340 0.82840 1.45499 1.19316 1.29580 1.24706 1.21916 0.95876 0.86819 0.92756 1.20534 1.00170 1.06358 1.00144 1.21363 0.92518 0.93043 0.96961 1.22086 1.03794 1.02064 0.99365 1.17122 0.80498 0.85312 0.85781 1.90987 1.55609 1.31773 1.64309 1.20905 0.82447 0.86251 0.86627 1.90579 1.53180 1.17986 1.86715 1.43376 1.48714 1.16127 1.05456 1.20309 1.27511 0.88387 1.11503 0.85934 1.25619 0.94783 0.98800 0.97264 1.69929 1.30330 1.31966 1.17463 0.86056 0.78443 0.82975 0.78370 1.18946 1.20789 1.20795 1.21145 0.87078 0.98523 0.92819 1.21854 0.99221 1.01945 0.93277 1.23744 0.79301 0.77531 0.87012 1.90719 1.61725 1.40070 1.47443 1.84579 1.26433 1.72934 1.49736 0.93098 0.91061 0.89559 0.78938 0.89002 0.86450 0.82529 0.84174 0.85303 0.83883 0.92043 0.87116 0.91700 0.88611 0.87690 0.74037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.54 7.39 37.16 0.27 -2.26 16 2 C 0.13 2.45 0.72 -91.78 -0.07 2.38 16 3 O -0.53 -8.57 9.00 -35.23 -0.32 -8.89 16 4 C 0.08 1.23 4.16 -4.04 -0.02 1.21 16 5 N -0.48 -6.86 2.34 -119.77 -0.28 -7.14 16 6 C 0.16 1.62 9.60 -16.84 -0.16 1.46 16 7 C -0.25 -2.28 10.01 -39.88 -0.40 -2.68 16 8 C -0.02 -0.17 10.10 -39.51 -0.40 -0.57 16 9 C -0.25 -3.29 9.99 -39.38 -0.39 -3.68 16 10 C 0.51 8.41 5.80 -15.45 -0.09 8.32 16 11 O -0.54 -11.09 14.82 4.87 0.07 -11.02 16 12 C 0.45 9.90 6.55 -10.99 -0.07 9.83 16 13 O -0.60 -14.42 15.66 5.55 0.09 -14.34 16 14 N -0.42 -9.57 2.49 -114.81 -0.29 -9.85 16 15 C -0.35 -8.09 7.07 -14.93 -0.11 -8.20 16 16 H 0.12 2.72 5.22 -52.49 -0.27 2.44 16 17 C 0.04 1.02 5.04 -17.47 -0.09 0.93 16 18 N -0.86 -22.63 11.57 55.50 0.64 -21.98 16 19 Si 0.91 19.19 29.57 -169.99 -5.03 14.17 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 C 0.13 2.92 4.18 -4.04 -0.02 2.90 16 24 C -0.12 -2.23 6.10 -27.88 -0.17 -2.40 16 25 C 0.48 8.37 8.33 36.01 0.30 8.67 16 26 O -0.51 -10.63 16.74 -18.75 -0.31 -10.95 16 27 O -0.53 -6.98 13.42 -39.25 -0.53 -7.50 16 28 H 0.05 1.01 6.17 -51.92 -0.32 0.69 16 29 H 0.07 1.58 7.71 -51.93 -0.40 1.18 16 30 H 0.09 1.98 6.90 -51.93 -0.36 1.62 16 31 H 0.36 4.47 9.04 45.56 0.41 4.88 16 32 H 0.09 1.20 8.01 -51.93 -0.42 0.78 16 33 H 0.12 2.20 7.15 -51.93 -0.37 1.82 16 34 H 0.16 1.12 8.04 -52.49 -0.42 0.70 16 35 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 39 H 0.11 2.79 5.80 -51.93 -0.30 2.49 16 40 H 0.06 1.62 7.48 -51.93 -0.39 1.24 16 41 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 42 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 43 H 0.40 3.47 9.10 45.56 0.41 3.89 16 LS Contribution 361.36 15.07 5.45 5.45 Total: -1.00 -33.83 361.36 -5.58 -39.41 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -3.67 Total: 16.73 kcal Atomic # 6 Polarization: 17.32 SS G_CDS: -1.40 Total: 15.91 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.08 Total: -38.98 kcal Atomic # 8 Polarization: -51.69 SS G_CDS: -1.00 Total: -52.69 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.83 -5.58 -39.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593419312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.647 kcal (2) G-P(sol) polarization free energy of solvation -33.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds