Wall clock time and date at job start Tue Mar 31 2020 21:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36004 * 116.99935 * 2 1 4 4 C 1.38237 * 119.96305 * 359.97438 * 3 2 1 5 5 C 1.39748 * 119.96734 * 179.97438 * 4 3 2 6 6 C 1.47487 * 120.05392 * 180.02562 * 5 4 3 7 7 O 1.21499 * 119.99865 * 179.97438 * 6 5 4 8 8 O 1.34745 * 119.99777 * 359.97438 * 6 5 4 9 9 C 1.39751 * 119.89660 * 359.97438 * 5 4 3 10 10 C 1.38332 * 119.92123 * 359.97438 * 9 5 4 11 11 N 1.40201 * 119.98762 * 180.02562 * 10 9 5 12 12 C 1.34779 * 119.99542 * 335.19370 * 11 10 9 13 13 O 1.21593 * 120.00268 * 354.36640 * 12 11 10 14 14 N 1.34780 * 119.99675 * 174.36980 * 12 11 10 15 15 C 1.46499 * 119.99811 * 180.27218 * 14 12 11 16 16 H 1.09004 * 109.47133 * 34.72575 * 15 14 12 17 17 C 1.52999 * 109.47354 * 274.72680 * 15 14 12 18 18 C 1.50698 * 109.47251 * 154.72304 * 15 14 12 19 19 H 1.08000 * 119.99789 * 0.02562 * 18 15 14 20 20 C 1.37878 * 120.00243 * 180.02562 * 18 15 14 21 21 N 1.31515 * 119.99873 * 0.02562 * 20 18 15 22 22 Si 1.86794 * 120.00053 * 180.02562 * 20 18 15 23 23 H 1.48497 * 109.47295 * 59.99712 * 22 20 18 24 24 H 1.48504 * 109.47274 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47294 * 300.00103 * 22 20 18 26 26 C 1.39209 * 119.95943 * 180.24816 * 3 2 1 27 27 O 1.35866 * 119.94830 * 0.02562 * 26 3 2 28 28 C 1.42899 * 117.00086 * 270.27288 * 27 26 3 29 29 H 1.08997 * 109.47196 * 300.00574 * 1 2 3 30 30 H 1.09003 * 109.47004 * 60.00243 * 1 2 3 31 31 H 1.09001 * 109.47411 * 179.97438 * 1 2 3 32 32 H 1.07997 * 120.01315 * 359.97438 * 4 3 2 33 33 H 0.96700 * 116.99782 * 180.02562 * 8 6 5 34 34 H 1.07998 * 120.03962 * 180.02562 * 9 5 4 35 35 H 0.96994 * 120.00536 * 155.19285 * 11 10 9 36 36 H 0.96996 * 120.00444 * 0.02562 * 14 12 11 37 37 H 1.08997 * 109.47274 * 59.99806 * 17 15 14 38 38 H 1.09003 * 109.47150 * 180.02562 * 17 15 14 39 39 H 1.09004 * 109.46915 * 300.00029 * 17 15 14 40 40 H 0.96997 * 119.99746 * 179.97438 * 21 20 18 41 41 H 1.08998 * 109.47649 * 180.02562 * 28 27 26 42 42 H 1.08998 * 109.47369 * 299.99988 * 28 27 26 43 43 H 1.08999 * 109.46984 * 59.99834 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2928 2.3707 -0.0005 5 6 1.9271 3.6159 0.0000 6 6 1.1249 4.8535 0.0000 7 8 1.6775 5.9356 0.0009 8 8 -0.2207 4.7841 -0.0010 9 6 3.3229 3.6866 0.0016 10 6 4.0727 2.5242 0.0032 11 7 5.4730 2.5935 0.0054 12 6 6.0943 3.6849 -0.4837 13 8 5.4473 4.5639 -1.0196 14 7 7.4329 3.8020 -0.3789 15 6 8.1077 4.9910 -0.9053 16 1 7.4672 5.8625 -0.7690 17 6 8.3944 4.7970 -2.3956 18 6 9.4047 5.2006 -0.1673 19 1 9.6974 4.5163 0.6153 20 6 10.2178 6.2660 -0.4910 21 7 9.8611 7.0997 -1.4437 22 14 11.8259 6.5254 0.4233 23 1 12.6985 5.3385 0.2367 24 1 12.5092 7.7315 -0.1093 25 1 11.5481 6.7128 1.8700 26 6 3.4367 1.2837 -0.0052 27 8 4.1748 0.1431 -0.0108 28 6 4.5271 -0.4080 1.2597 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2143 2.3137 -0.0014 33 1 -0.7035 5.6219 -0.0014 34 1 3.8155 4.6477 0.0025 35 1 5.9946 1.8561 0.3589 36 1 7.9492 3.1006 0.0482 37 1 7.4563 4.6454 -2.9294 38 1 8.8969 5.6816 -2.7871 39 1 9.0349 3.9256 -2.5319 40 1 10.4330 7.8494 -1.6712 41 1 5.1146 -1.3142 1.1125 42 1 5.1151 0.3186 1.8204 43 1 3.6208 -0.6483 1.8154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607093462.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:09 Heat of formation + Delta-G solvation = -181.385907 kcal Electronic energy + Delta-G solvation = -29574.548635 eV Core-core repulsion = 25199.366183 eV Total energy + Delta-G solvation = -4375.182452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.30900 -41.20908 -40.82067 -39.28330 -38.09000 -37.13135 -36.80530 -35.65104 -34.35379 -31.73766 -31.24423 -29.84283 -28.29322 -27.97761 -27.33810 -25.50522 -24.32899 -22.80318 -22.42232 -21.66277 -20.08255 -19.72199 -19.09919 -18.66483 -18.28868 -17.62132 -17.36494 -17.30430 -17.03020 -16.66175 -16.60229 -16.26032 -16.05911 -15.79886 -15.47816 -15.13463 -14.93465 -14.61571 -14.40671 -13.96540 -13.90027 -13.63847 -13.29154 -12.98734 -12.91347 -12.74613 -12.71235 -12.65000 -12.40342 -12.32468 -12.24029 -12.14291 -11.80977 -11.53890 -11.34755 -11.12345 -10.93461 -10.60558 -9.92753 -9.45249 -9.16939 -8.17417 -6.35210 -0.67109 0.11307 1.23169 1.42067 1.47433 1.49065 1.56594 1.92566 2.06280 2.25494 2.39938 2.44093 2.69966 3.13129 3.29804 3.69543 3.84158 4.03527 4.06693 4.18629 4.36358 4.44577 4.47600 4.50726 4.69654 4.73062 4.81169 4.83681 4.89128 4.92037 4.97335 5.08062 5.12863 5.36125 5.49312 5.51199 5.57318 5.61607 5.80442 6.04546 6.07127 6.13521 6.46170 6.71607 6.90057 7.10577 7.32523 7.56480 8.89101 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.014433 B = 0.002962 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.536493 B = 9452.212165 C =10881.458215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.312 6.312 3 C 0.124 3.876 4 C -0.147 4.147 5 C -0.083 4.083 6 C 0.535 3.465 7 O -0.545 6.545 8 O -0.493 6.493 9 C -0.116 4.116 10 C 0.176 3.824 11 N -0.664 5.664 12 C 0.693 3.307 13 O -0.615 6.615 14 N -0.708 5.708 15 C 0.288 3.712 16 H 0.000 1.000 17 C -0.135 4.135 18 C -0.548 4.548 19 H 0.076 0.924 20 C 0.014 3.986 21 N -0.918 5.918 22 Si 0.975 3.025 23 H -0.262 1.262 24 H -0.287 1.287 25 H -0.271 1.271 26 C 0.063 3.937 27 O -0.331 6.331 28 C 0.022 3.978 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.125 0.875 32 H 0.181 0.819 33 H 0.436 0.564 34 H 0.133 0.867 35 H 0.422 0.578 36 H 0.405 0.595 37 H 0.010 0.990 38 H 0.068 0.932 39 H 0.042 0.958 40 H 0.266 0.734 41 H 0.120 0.880 42 H 0.051 0.949 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.054 -18.037 7.237 27.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.225 6.225 3 C 0.077 3.923 4 C -0.166 4.166 5 C -0.085 4.085 6 C 0.380 3.620 7 O -0.436 6.436 8 O -0.307 6.307 9 C -0.137 4.137 10 C 0.078 3.922 11 N -0.312 5.312 12 C 0.393 3.607 13 O -0.495 6.495 14 N -0.361 5.361 15 C 0.185 3.815 16 H 0.018 0.982 17 C -0.194 4.194 18 C -0.586 4.586 19 H 0.094 0.906 20 C -0.186 4.186 21 N -0.556 5.556 22 Si 0.799 3.201 23 H -0.187 1.187 24 H -0.213 1.213 25 H -0.196 1.196 26 C 0.014 3.986 27 O -0.247 6.247 28 C -0.072 4.072 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.143 0.857 32 H 0.198 0.802 33 H 0.298 0.702 34 H 0.150 0.850 35 H 0.261 0.739 36 H 0.241 0.759 37 H 0.029 0.971 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.138 0.862 42 H 0.070 0.930 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.939 -17.420 6.511 27.265 hybrid contribution 0.891 0.922 0.602 1.416 sum -19.048 -16.498 7.113 26.184 Atomic orbital electron populations 1.23529 0.75728 1.06208 1.02900 1.86167 1.23826 1.24333 1.88184 1.18763 0.90257 0.85875 0.97390 1.21517 1.02074 0.88844 1.04201 1.18659 0.91482 0.91665 1.06741 1.20647 0.81615 0.88271 0.71484 1.90965 1.73620 1.31820 1.47204 1.84464 1.17660 1.43498 1.85069 1.21251 0.92705 0.99085 1.00708 1.17390 0.82708 0.92246 0.99818 1.42343 1.04118 1.20332 1.64442 1.16231 0.83074 0.82121 0.79272 1.90879 1.65437 1.42656 1.50546 1.45461 1.03926 1.24703 1.61964 1.18302 0.90746 0.81372 0.91079 0.98161 1.21932 0.97821 1.01598 0.98042 1.21489 1.04386 1.12654 1.20048 0.90554 1.25816 1.01908 0.95059 0.95809 1.70056 1.39213 1.15448 1.30843 0.85353 0.78431 0.77780 0.78488 1.18678 1.21272 1.19601 1.17790 0.87695 0.84650 1.08433 1.86092 1.70424 1.36983 1.31228 1.23357 1.00871 0.99544 0.83383 0.90819 0.91384 0.85723 0.80195 0.70166 0.84974 0.73911 0.75943 0.97113 0.91291 0.93886 0.92492 0.86210 0.93023 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.31 -5.66 10.27 -79.48 -0.82 -6.47 16 3 C 0.12 2.77 6.69 22.50 0.15 2.92 16 4 C -0.15 -3.05 8.60 22.63 0.19 -2.85 16 5 C -0.08 -2.36 5.87 -20.11 -0.12 -2.48 16 6 C 0.53 14.76 8.26 70.26 0.58 15.34 16 7 O -0.54 -20.24 17.12 19.84 0.34 -19.90 16 8 O -0.49 -7.96 12.67 -56.55 -0.72 -8.67 16 9 C -0.12 -4.13 8.26 22.66 0.19 -3.95 16 10 C 0.18 5.62 6.44 38.10 0.25 5.87 16 11 N -0.66 -21.50 5.29 -316.96 -1.68 -23.18 16 12 C 0.69 29.52 8.33 179.05 1.49 31.01 16 13 O -0.61 -31.99 13.17 -4.01 -0.05 -32.04 16 14 N -0.71 -30.05 5.07 -461.40 -2.34 -32.39 16 15 C 0.29 15.24 2.56 44.24 0.11 15.35 16 16 H 0.00 0.03 7.57 -2.38 -0.02 0.01 16 17 C -0.13 -7.01 9.26 71.98 0.67 -6.35 16 18 C -0.55 -29.05 8.73 25.60 0.22 -28.82 16 19 H 0.08 3.72 7.74 -2.91 -0.02 3.70 16 20 C 0.01 0.77 5.30 84.65 0.45 1.22 16 21 N -0.92 -53.25 11.32 21.45 0.24 -53.01 16 22 Si 0.98 42.07 29.54 68.60 2.03 44.10 16 23 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 24 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 C 0.06 1.65 5.76 22.78 0.13 1.78 16 27 O -0.33 -7.83 9.60 -77.92 -0.75 -8.58 16 28 C 0.02 0.34 10.97 113.37 1.24 1.58 16 29 H 0.07 0.43 7.66 -2.39 -0.02 0.41 16 30 H 0.07 0.49 7.66 -2.39 -0.02 0.48 16 31 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.18 2.43 5.81 -2.91 -0.02 2.41 16 33 H 0.44 3.09 9.11 -74.06 -0.67 2.41 16 34 H 0.13 5.94 5.36 -2.91 -0.02 5.92 16 35 H 0.42 10.51 7.83 -92.71 -0.73 9.78 16 36 H 0.41 14.04 8.56 -92.71 -0.79 13.25 16 37 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 39 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 40 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 41 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.05 0.72 7.77 -2.39 -0.02 0.70 16 43 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -80.58 370.37 1.84 -78.74 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: -1.08 Total: 29.58 kcal Atomic # 6 Polarization: 25.15 SS G_CDS: 6.67 Total: 31.82 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -3.77 Total: -108.57 kcal Atomic # 8 Polarization: -73.68 SS G_CDS: -1.99 Total: -75.67 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -80.58 1.84 -78.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607093462.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.648 kcal (2) G-P(sol) polarization free energy of solvation -80.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds