Wall clock time and date at job start Tue Mar 31 2020 22:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.46986 * 2 1 4 4 O 1.45202 * 109.46905 * 239.99872 * 2 1 3 5 5 C 1.34811 * 116.99522 * 90.00147 * 4 2 1 6 6 O 1.21531 * 120.00301 * 359.97438 * 5 4 2 7 7 C 1.47180 * 120.00037 * 179.97438 * 5 4 2 8 8 C 1.38017 * 125.90282 * 180.02562 * 7 5 4 9 9 C 1.39396 * 107.46464 * 179.97438 * 8 7 5 10 10 C 1.38021 * 107.46032 * 359.97438 * 9 8 7 11 11 C 1.47175 * 125.89760 * 180.02562 * 10 9 8 12 12 O 1.21524 * 120.00324 * 359.97438 * 11 10 9 13 13 O 1.34814 * 119.99856 * 179.97438 * 11 10 9 14 14 N 1.36760 * 108.19935 * 359.74094 * 10 9 8 15 15 C 1.46497 * 125.66215 * 180.28299 * 14 10 9 16 16 C 1.50703 * 109.47188 * 120.00544 * 2 1 3 17 17 O 1.21279 * 120.00448 * 105.80657 * 16 2 1 18 18 N 1.34776 * 119.99505 * 285.80738 * 16 2 1 19 19 C 1.46498 * 120.00243 * 4.44811 * 18 16 2 20 20 C 1.46504 * 119.99766 * 184.17991 * 18 16 2 21 21 C 1.50699 * 109.47197 * 270.27210 * 20 18 16 22 22 H 1.08006 * 119.99900 * 0.02562 * 21 20 18 23 23 C 1.37871 * 120.00674 * 179.97438 * 21 20 18 24 24 N 1.31522 * 119.99466 * 0.02562 * 23 21 20 25 25 Si 1.86790 * 120.00382 * 179.97438 * 23 21 20 26 26 H 1.48509 * 109.47353 * 90.00282 * 25 23 21 27 27 H 1.48504 * 109.47179 * 209.99934 * 25 23 21 28 28 H 1.48495 * 109.47627 * 329.99960 * 25 23 21 29 29 H 1.09000 * 109.46976 * 292.32601 * 1 2 3 30 30 H 1.08990 * 109.47136 * 52.33111 * 1 2 3 31 31 H 1.09006 * 109.47189 * 172.33006 * 1 2 3 32 32 H 1.08006 * 126.26699 * 359.97438 * 8 7 5 33 33 H 1.07996 * 126.27278 * 180.02562 * 9 8 7 34 34 H 0.96705 * 117.00178 * 180.02562 * 13 11 10 35 35 H 1.08996 * 109.47423 * 270.16541 * 15 14 10 36 36 H 1.08997 * 109.46955 * 30.16684 * 15 14 10 37 37 H 1.09004 * 109.47043 * 150.16629 * 15 14 10 38 38 H 1.08998 * 109.47199 * 268.28814 * 19 18 16 39 39 H 1.09000 * 109.47111 * 28.28812 * 19 18 16 40 40 H 1.09003 * 109.46979 * 148.29167 * 19 18 16 41 41 H 1.08999 * 109.47069 * 30.27073 * 20 18 16 42 42 H 1.09000 * 109.47345 * 150.27442 * 20 18 16 43 43 H 0.97004 * 119.99652 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2179 0.0673 -2.2858 6 8 1.9969 1.2619 -2.2551 7 6 2.7084 -0.5587 -3.5243 8 6 2.9588 0.0916 -4.7157 9 6 3.4076 -0.8630 -5.6270 10 6 3.4244 -2.0804 -4.9770 11 6 3.8332 -3.3665 -5.5642 12 8 4.1973 -3.4174 -6.7225 13 8 3.8038 -4.4883 -4.8170 14 7 3.0016 -1.8840 -3.6913 15 6 2.8794 -2.9218 -2.6645 16 6 2.0324 -0.7105 1.2304 17 8 2.5042 -1.8239 1.1376 18 7 1.9572 -0.1086 2.4340 19 6 1.2995 1.1942 2.5616 20 6 2.5280 -0.7600 3.6156 21 6 1.4835 -1.6331 4.2617 22 1 0.4935 -1.6969 3.8346 23 6 1.7917 -2.3514 5.3974 24 7 2.9974 -2.2742 5.9173 25 14 0.4967 -3.4331 6.1987 26 1 0.5635 -4.7983 5.6178 27 1 0.7470 -3.5047 7.6607 28 1 -0.8499 -2.8567 5.9547 29 1 -0.3633 0.3904 0.9506 30 1 -0.3633 0.6279 -0.8134 31 1 -0.3634 -1.0185 -0.1372 32 1 2.8305 1.1468 -4.9068 33 1 3.6910 -0.6828 -6.6534 34 1 4.0818 -5.3091 -5.2462 35 1 1.8805 -3.3560 -2.7039 36 1 3.6212 -3.6999 -2.8443 37 1 3.0457 -2.4815 -1.6813 38 1 2.0381 1.9871 2.4444 39 1 0.5354 1.2926 1.7906 40 1 0.8357 1.2722 3.5450 41 1 3.3793 -1.3719 3.3175 42 1 2.8569 -0.0011 4.3255 43 1 3.2144 -2.7799 6.7161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609797068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:01 Heat of formation + Delta-G solvation = -147.320267 kcal Electronic energy + Delta-G solvation = -29460.226819 eV Core-core repulsion = 25086.521564 eV Total energy + Delta-G solvation = -4373.705255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.04144 -40.61611 -39.90173 -38.91362 -36.61128 -36.53167 -35.00044 -33.27231 -32.91544 -31.81268 -30.38521 -27.80167 -26.90729 -26.30543 -25.57335 -24.33049 -23.18545 -21.98822 -20.55776 -20.22601 -18.97384 -18.50047 -18.26668 -17.50487 -16.81946 -16.66623 -16.56208 -16.08374 -16.04984 -15.30383 -15.06756 -14.63042 -14.47829 -14.29806 -14.00211 -13.75440 -13.65202 -13.23297 -13.12462 -12.99994 -12.70478 -12.56353 -12.24021 -12.14875 -12.12064 -11.94376 -11.75505 -11.42167 -11.29889 -11.28030 -10.96658 -10.90918 -10.84752 -10.63829 -10.22737 -9.72260 -9.22839 -9.02980 -8.88007 -8.50833 -7.81557 -6.11905 -4.17040 0.42420 1.55243 2.05188 2.31931 2.60801 2.67257 2.79701 3.12882 3.26333 3.32670 3.34921 3.75565 4.29018 4.37678 4.50809 4.63570 4.73045 4.89036 4.94348 4.99770 5.15187 5.18412 5.22872 5.33301 5.50764 5.56951 5.59999 5.64686 5.77353 5.81275 5.97613 5.99007 6.12985 6.15914 6.19413 6.42602 6.51883 6.89824 7.29779 7.36976 7.43551 7.49644 7.83462 8.12799 8.19708 8.74704 8.90360 9.48130 10.96311 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.002724 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.344773 B =10277.623702 C =11546.613720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.071 3.929 3 H 0.107 0.893 4 O -0.327 6.327 5 C 0.534 3.466 6 O -0.490 6.490 7 C 0.010 3.990 8 C -0.120 4.120 9 C -0.116 4.116 10 C -0.007 4.007 11 C 0.557 3.443 12 O -0.501 6.501 13 O -0.513 6.513 14 N -0.381 5.381 15 C 0.051 3.949 16 C 0.509 3.491 17 O -0.520 6.520 18 N -0.594 5.594 19 C 0.066 3.934 20 C 0.247 3.753 21 C -0.528 4.528 22 H 0.058 0.942 23 C 0.061 3.939 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.279 1.279 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.418 0.582 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.037 0.963 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.722 3.397 -19.989 20.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 H 0.124 0.876 4 O -0.242 6.242 5 C 0.378 3.622 6 O -0.377 6.377 7 C -0.106 4.106 8 C -0.145 4.145 9 C -0.142 4.142 10 C -0.123 4.123 11 C 0.401 3.599 12 O -0.388 6.388 13 O -0.326 6.326 14 N -0.054 5.054 15 C -0.088 4.088 16 C 0.293 3.707 17 O -0.396 6.396 18 N -0.327 5.327 19 C -0.078 4.078 20 C 0.129 3.871 21 C -0.566 4.566 22 H 0.076 0.924 23 C -0.141 4.141 24 N -0.533 5.533 25 Si 0.727 3.273 26 H -0.205 1.205 27 H -0.211 1.211 28 H -0.199 1.199 29 H 0.111 0.889 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.181 0.819 33 H 0.180 0.820 34 H 0.278 0.722 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.135 0.865 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.477 3.126 -19.619 19.921 hybrid contribution -0.590 -1.043 0.414 1.268 sum -2.067 2.083 -19.205 19.428 Atomic orbital electron populations 1.22313 0.92061 1.04242 1.04224 1.22744 0.96098 0.97574 0.82279 0.87558 1.86700 1.76807 1.41027 1.19703 1.19925 0.74695 0.84994 0.82635 1.90875 1.48299 1.14860 1.83696 1.19684 1.12636 0.83670 0.94630 1.21272 1.02932 1.00363 0.89944 1.21256 1.03360 0.89049 1.00486 1.19551 1.13866 0.93170 0.85710 1.19541 0.74157 0.82793 0.83420 1.90948 1.44389 1.86224 1.17288 1.84643 1.81050 1.19432 1.47432 1.44276 1.43946 1.07595 1.09632 1.22778 1.04815 0.90129 0.91106 1.19721 0.80665 0.86569 0.83771 1.90687 1.45026 1.18320 1.85574 1.48085 1.56377 1.19828 1.08452 1.21998 0.97148 0.85004 1.03629 1.19362 0.94722 0.92921 0.80133 1.21394 0.98120 1.26983 1.10144 0.92363 1.24937 0.95630 0.96627 0.96884 1.69933 1.19328 1.41892 1.22153 0.86481 0.81553 0.80953 0.78322 1.20523 1.21111 1.19903 0.88900 0.91018 0.90618 0.81867 0.81986 0.72206 0.89454 0.87781 0.86534 0.93242 0.91536 0.90170 0.93808 0.94543 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 9.15 37.16 0.34 -1.83 16 2 C 0.07 1.09 2.17 -27.88 -0.06 1.03 16 3 H 0.11 1.51 6.71 -51.93 -0.35 1.16 16 4 O -0.33 -4.96 6.82 -47.36 -0.32 -5.29 16 5 C 0.53 7.49 7.91 34.36 0.27 7.76 16 6 O -0.49 -7.37 16.14 -19.29 -0.31 -7.68 16 7 C 0.01 0.13 6.87 -82.12 -0.56 -0.43 16 8 C -0.12 -1.25 10.60 -39.23 -0.42 -1.66 16 9 C -0.12 -1.14 10.60 -39.23 -0.42 -1.56 16 10 C -0.01 -0.08 6.87 -82.12 -0.56 -0.64 16 11 C 0.56 5.60 8.31 34.36 0.29 5.89 16 12 O -0.50 -6.08 17.66 -19.28 -0.34 -6.42 16 13 O -0.51 -3.67 10.80 -40.81 -0.44 -4.11 16 14 N -0.38 -4.40 3.17 -115.90 -0.37 -4.77 16 15 C 0.05 0.56 9.96 59.85 0.60 1.15 16 16 C 0.51 10.16 7.00 -10.98 -0.08 10.08 16 17 O -0.52 -12.47 16.19 -13.66 -0.22 -12.69 16 18 N -0.59 -11.99 2.86 -182.95 -0.52 -12.52 16 19 C 0.07 0.98 9.86 59.85 0.59 1.57 16 20 C 0.25 6.21 5.13 -5.19 -0.03 6.19 16 21 C -0.53 -14.42 9.38 -34.44 -0.32 -14.75 16 22 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 23 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 24 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 25 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.09 1.10 5.52 -51.93 -0.29 0.82 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 33 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.42 1.06 9.11 45.56 0.42 1.47 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.10 0.99 6.11 -51.93 -0.32 0.67 16 37 H 0.12 1.55 6.10 -51.93 -0.32 1.23 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.80 4.21 -51.93 -0.22 0.58 16 40 H 0.08 1.21 8.08 -51.93 -0.42 0.79 16 41 H 0.04 1.24 7.49 -51.93 -0.39 0.85 16 42 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 373.27 15.07 5.63 5.63 Total: -1.00 -35.14 373.27 -6.03 -41.17 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -4.38 Total: 1.21 kcal Atomic # 6 Polarization: 14.86 SS G_CDS: -0.46 Total: 14.40 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: -0.15 Total: -42.46 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -1.64 Total: -36.19 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.14 -6.03 -41.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609797068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.149 kcal (2) G-P(sol) polarization free energy of solvation -35.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds