Wall clock time and date at job start Tue Mar 31 2020 22:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.46986 * 2 1 4 4 O 1.45202 * 109.46905 * 239.99872 * 2 1 3 5 5 C 1.34811 * 116.99522 * 90.00147 * 4 2 1 6 6 O 1.21531 * 120.00301 * 359.97438 * 5 4 2 7 7 C 1.47180 * 120.00037 * 179.97438 * 5 4 2 8 8 C 1.38017 * 125.90282 * 180.02562 * 7 5 4 9 9 C 1.39396 * 107.46464 * 179.97438 * 8 7 5 10 10 C 1.38021 * 107.46032 * 359.97438 * 9 8 7 11 11 C 1.47175 * 125.89760 * 180.02562 * 10 9 8 12 12 O 1.21524 * 120.00324 * 359.97438 * 11 10 9 13 13 O 1.34814 * 119.99856 * 179.97438 * 11 10 9 14 14 N 1.36760 * 108.19935 * 359.74094 * 10 9 8 15 15 C 1.46497 * 125.66215 * 180.28299 * 14 10 9 16 16 C 1.50703 * 109.47188 * 120.00544 * 2 1 3 17 17 O 1.21279 * 120.00448 * 105.80657 * 16 2 1 18 18 N 1.34776 * 119.99505 * 285.80738 * 16 2 1 19 19 C 1.46498 * 120.00243 * 4.44811 * 18 16 2 20 20 C 1.46504 * 119.99766 * 184.17991 * 18 16 2 21 21 C 1.50699 * 109.47197 * 270.27210 * 20 18 16 22 22 H 1.08006 * 119.99900 * 0.02562 * 21 20 18 23 23 C 1.37871 * 120.00674 * 179.97438 * 21 20 18 24 24 N 1.31522 * 119.99466 * 0.02562 * 23 21 20 25 25 Si 1.86790 * 120.00382 * 179.97438 * 23 21 20 26 26 H 1.48509 * 109.47353 * 90.00282 * 25 23 21 27 27 H 1.48504 * 109.47179 * 209.99934 * 25 23 21 28 28 H 1.48495 * 109.47627 * 329.99960 * 25 23 21 29 29 H 1.09000 * 109.46976 * 292.32601 * 1 2 3 30 30 H 1.08990 * 109.47136 * 52.33111 * 1 2 3 31 31 H 1.09006 * 109.47189 * 172.33006 * 1 2 3 32 32 H 1.08006 * 126.26699 * 359.97438 * 8 7 5 33 33 H 1.07996 * 126.27278 * 180.02562 * 9 8 7 34 34 H 0.96705 * 117.00178 * 180.02562 * 13 11 10 35 35 H 1.08996 * 109.47423 * 270.16541 * 15 14 10 36 36 H 1.08997 * 109.46955 * 30.16684 * 15 14 10 37 37 H 1.09004 * 109.47043 * 150.16629 * 15 14 10 38 38 H 1.08998 * 109.47199 * 268.28814 * 19 18 16 39 39 H 1.09000 * 109.47111 * 28.28812 * 19 18 16 40 40 H 1.09003 * 109.46979 * 148.29167 * 19 18 16 41 41 H 1.08999 * 109.47069 * 30.27073 * 20 18 16 42 42 H 1.09000 * 109.47345 * 150.27442 * 20 18 16 43 43 H 0.97004 * 119.99652 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2179 0.0673 -2.2858 6 8 1.9969 1.2619 -2.2551 7 6 2.7084 -0.5587 -3.5243 8 6 2.9588 0.0916 -4.7157 9 6 3.4076 -0.8630 -5.6270 10 6 3.4244 -2.0804 -4.9770 11 6 3.8332 -3.3665 -5.5642 12 8 4.1973 -3.4174 -6.7225 13 8 3.8038 -4.4883 -4.8170 14 7 3.0016 -1.8840 -3.6913 15 6 2.8794 -2.9218 -2.6645 16 6 2.0324 -0.7105 1.2304 17 8 2.5042 -1.8239 1.1376 18 7 1.9572 -0.1086 2.4340 19 6 1.2995 1.1942 2.5616 20 6 2.5280 -0.7600 3.6156 21 6 1.4835 -1.6331 4.2617 22 1 0.4935 -1.6969 3.8346 23 6 1.7917 -2.3514 5.3974 24 7 2.9974 -2.2742 5.9173 25 14 0.4967 -3.4331 6.1987 26 1 0.5635 -4.7983 5.6178 27 1 0.7470 -3.5047 7.6607 28 1 -0.8499 -2.8567 5.9547 29 1 -0.3633 0.3904 0.9506 30 1 -0.3633 0.6279 -0.8134 31 1 -0.3634 -1.0185 -0.1372 32 1 2.8305 1.1468 -4.9068 33 1 3.6910 -0.6828 -6.6534 34 1 4.0818 -5.3091 -5.2462 35 1 1.8805 -3.3560 -2.7039 36 1 3.6212 -3.6999 -2.8443 37 1 3.0457 -2.4815 -1.6813 38 1 2.0381 1.9871 2.4444 39 1 0.5354 1.2926 1.7906 40 1 0.8357 1.2722 3.5450 41 1 3.3793 -1.3719 3.3175 42 1 2.8569 -0.0011 4.3255 43 1 3.2144 -2.7799 6.7161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609797068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:00 Heat of formation + Delta-G solvation = -170.087555 kcal Electronic energy + Delta-G solvation = -29461.214083 eV Core-core repulsion = 25086.521564 eV Total energy + Delta-G solvation = -4374.692519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.91275 -41.74417 -40.80454 -40.30474 -37.76789 -37.27651 -36.69056 -34.89753 -34.07838 -33.15465 -31.29514 -29.63625 -27.76874 -27.68000 -26.58554 -25.78841 -24.52220 -23.23077 -21.42764 -21.15053 -20.46266 -19.29339 -19.20979 -18.69491 -18.44654 -18.06475 -17.60636 -17.45424 -17.00394 -16.88680 -16.22852 -16.18194 -15.82656 -15.14723 -15.01867 -14.91684 -14.70747 -14.38754 -14.30637 -14.01074 -13.92970 -13.74470 -13.62617 -13.41760 -13.36046 -13.09448 -13.02961 -12.83284 -12.67884 -12.61996 -12.37244 -12.21163 -12.15441 -12.02172 -11.93145 -11.69821 -10.65224 -10.63259 -10.04205 -9.75411 -9.52451 -8.23230 -6.37464 -0.46824 0.68440 1.01505 1.37997 1.38687 1.40412 1.49827 1.59945 1.78842 1.91115 1.93141 2.28581 2.42108 3.07281 3.28933 3.36840 3.67695 3.74038 3.81419 3.83770 4.16242 4.21276 4.30114 4.39447 4.49888 4.59105 4.66199 4.73332 4.79725 4.86471 4.92064 4.96236 5.08953 5.12704 5.19179 5.27589 5.44800 5.51192 5.60573 5.67870 5.77111 6.03101 6.38395 6.59371 6.71367 6.82546 7.18972 7.35710 8.84239 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.002724 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.344773 B =10277.623702 C =11546.613720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.081 3.919 3 H 0.123 0.877 4 O -0.337 6.337 5 C 0.536 3.464 6 O -0.503 6.503 7 C -0.017 4.017 8 C -0.107 4.107 9 C -0.113 4.113 10 C -0.013 4.013 11 C 0.565 3.435 12 O -0.524 6.524 13 O -0.506 6.506 14 N -0.386 5.386 15 C 0.056 3.944 16 C 0.501 3.499 17 O -0.572 6.572 18 N -0.600 5.600 19 C 0.059 3.941 20 C 0.260 3.740 21 C -0.540 4.540 22 H 0.057 0.943 23 C 0.008 3.992 24 N -0.929 5.929 25 Si 0.967 3.033 26 H -0.281 1.281 27 H -0.277 1.277 28 H -0.260 1.260 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.182 0.818 33 H 0.184 0.816 34 H 0.439 0.561 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.000 1.000 42 H 0.030 0.970 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.262 4.014 -21.338 21.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 H 0.141 0.859 4 O -0.253 6.253 5 C 0.381 3.619 6 O -0.391 6.391 7 C -0.132 4.132 8 C -0.133 4.133 9 C -0.138 4.138 10 C -0.129 4.129 11 C 0.409 3.591 12 O -0.413 6.413 13 O -0.322 6.322 14 N -0.060 5.060 15 C -0.083 4.083 16 C 0.288 3.712 17 O -0.451 6.451 18 N -0.332 5.332 19 C -0.082 4.082 20 C 0.140 3.860 21 C -0.579 4.579 22 H 0.075 0.925 23 C -0.191 4.191 24 N -0.569 5.569 25 Si 0.791 3.209 26 H -0.207 1.207 27 H -0.202 1.202 28 H -0.185 1.185 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.199 0.801 33 H 0.201 0.799 34 H 0.303 0.697 35 H 0.113 0.887 36 H 0.134 0.866 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.018 0.982 42 H 0.048 0.952 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.041 3.771 -20.973 21.525 hybrid contribution -0.036 -1.258 0.773 1.477 sum -3.077 2.513 -20.200 20.587 Atomic orbital electron populations 1.22319 0.89662 1.04483 1.05714 1.22617 0.97624 0.97070 0.80361 0.85933 1.86725 1.77122 1.41531 1.19971 1.20137 0.74267 0.84869 0.82588 1.90854 1.49156 1.15164 1.83896 1.19729 1.14563 0.84346 0.94603 1.21570 1.01395 1.01267 0.89031 1.21569 1.02580 0.88418 1.01275 1.19888 1.13420 0.94151 0.85470 1.19393 0.73529 0.83150 0.83003 1.90943 1.45567 1.86628 1.18185 1.84594 1.80541 1.19867 1.47182 1.44301 1.44307 1.07430 1.09949 1.22692 1.05689 0.90104 0.89846 1.20555 0.79564 0.86155 0.84960 1.90654 1.47192 1.20787 1.86495 1.48058 1.56395 1.21416 1.07340 1.22310 0.98364 0.82763 1.04763 1.18845 0.93278 0.92276 0.81646 1.21674 0.98343 1.27473 1.10402 0.92516 1.25840 0.97739 0.97965 0.97548 1.70051 1.21239 1.42873 1.22688 0.85426 0.79332 0.78635 0.77493 1.20682 1.20194 1.18451 0.87858 0.88637 0.91348 0.80058 0.79901 0.69748 0.88670 0.86591 0.89200 0.90884 0.88234 0.90444 0.98211 0.95198 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 9.15 71.98 0.66 -3.18 16 2 C 0.08 2.41 2.17 29.85 0.06 2.48 16 3 H 0.12 3.24 6.71 -2.39 -0.02 3.23 16 4 O -0.34 -10.22 6.82 -50.96 -0.35 -10.56 16 5 C 0.54 14.62 7.91 70.17 0.56 15.17 16 6 O -0.50 -14.32 16.14 19.73 0.32 -14.00 16 7 C -0.02 -0.40 6.87 40.67 0.28 -0.12 16 8 C -0.11 -2.03 10.60 22.50 0.24 -1.79 16 9 C -0.11 -2.00 10.60 22.50 0.24 -1.76 16 10 C -0.01 -0.27 6.87 40.67 0.28 0.01 16 11 C 0.56 10.51 8.31 70.17 0.58 11.09 16 12 O -0.52 -11.94 17.66 19.75 0.35 -11.59 16 13 O -0.51 -6.40 10.80 -57.26 -0.62 -7.02 16 14 N -0.39 -8.64 3.17 -520.59 -1.65 -10.29 16 15 C 0.06 1.23 9.96 127.77 1.27 2.50 16 16 C 0.50 20.34 7.00 87.66 0.61 20.95 16 17 O -0.57 -28.69 16.19 15.35 0.25 -28.44 16 18 N -0.60 -24.44 2.86 -851.13 -2.43 -26.87 16 19 C 0.06 1.67 9.86 127.77 1.26 2.93 16 20 C 0.26 13.59 5.13 85.63 0.44 14.03 16 21 C -0.54 -30.10 9.38 25.60 0.24 -29.86 16 22 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 23 C 0.01 0.46 5.46 84.65 0.46 0.92 16 24 N -0.93 -55.02 13.29 21.45 0.28 -54.73 16 25 Si 0.97 43.70 29.54 68.60 2.03 45.73 16 26 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 27 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 28 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 29 H 0.10 2.16 5.52 -2.39 -0.01 2.15 16 30 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.18 2.67 8.06 -2.91 -0.02 2.64 16 33 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.44 1.35 9.11 -74.05 -0.67 0.68 16 35 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.12 2.17 6.11 -2.39 -0.01 2.16 16 37 H 0.09 2.51 6.10 -2.38 -0.01 2.49 16 38 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.10 2.12 4.21 -2.39 -0.01 2.11 16 40 H 0.08 2.23 8.08 -2.39 -0.02 2.21 16 41 H 0.00 -0.01 7.49 -2.39 -0.02 -0.03 16 42 H 0.03 1.58 8.07 -2.39 -0.02 1.56 16 43 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -78.14 373.27 5.77 -72.37 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 0.40 Total: 12.05 kcal Atomic # 6 Polarization: 26.19 SS G_CDS: 7.18 Total: 33.37 kcal Atomic # 7 Polarization: -88.10 SS G_CDS: -3.80 Total: -91.90 kcal Atomic # 8 Polarization: -71.57 SS G_CDS: -0.05 Total: -71.63 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -78.14 5.77 -72.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609797068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.714 kcal (2) G-P(sol) polarization free energy of solvation -78.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds