Wall clock time and date at job start Tue Mar 31 2020 20:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47657 * 2 1 4 4 H 1.09003 * 109.46884 * 305.66351 * 3 2 1 5 5 C 1.50697 * 109.47500 * 185.65792 * 3 2 1 6 6 H 1.07999 * 119.99971 * 240.00466 * 5 3 2 7 7 C 1.37875 * 119.99739 * 59.99927 * 5 3 2 8 8 N 1.31515 * 120.00259 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00007 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46796 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.46952 * 120.00195 * 9 7 5 12 12 H 1.48498 * 109.46982 * 240.00222 * 9 7 5 13 13 N 1.46905 * 109.47000 * 65.65731 * 3 2 1 14 14 C 1.46895 * 111.00107 * 205.54352 * 13 3 2 15 15 C 1.50699 * 109.46968 * 184.79132 * 14 13 3 16 16 C 1.38285 * 119.94869 * 90.00374 * 15 14 13 17 17 C 1.38115 * 120.05988 * 179.72214 * 16 15 14 18 18 C 1.38760 * 119.94323 * 0.25022 * 17 16 15 19 19 O 1.35896 * 120.05538 * 180.02562 * 18 17 16 20 20 C 1.42903 * 117.00095 * 359.97438 * 19 18 17 21 21 C 1.50702 * 109.47084 * 180.02562 * 20 19 18 22 22 O 1.20830 * 120.00188 * 359.97438 * 21 20 19 23 23 O 1.34228 * 119.99963 * 180.02562 * 21 20 19 24 24 C 1.38713 * 119.88724 * 0.02562 * 18 17 16 25 25 N 1.47999 * 120.02423 * 179.97438 * 24 18 17 26 26 O 1.21805 * 119.99562 * 179.97438 * 25 24 18 27 27 O 1.21796 * 120.00406 * 359.97438 * 25 24 18 28 28 C 1.38163 * 119.94451 * 359.97438 * 24 18 17 29 29 H 1.09007 * 109.46583 * 295.69236 * 1 2 3 30 30 H 1.09002 * 109.46981 * 55.68897 * 1 2 3 31 31 H 1.09001 * 109.47418 * 175.69202 * 1 2 3 32 32 H 1.08999 * 109.46912 * 239.99758 * 2 1 3 33 33 H 1.09000 * 109.46998 * 120.00507 * 2 1 3 34 34 H 0.97005 * 120.00376 * 179.97438 * 8 7 5 35 35 H 1.00898 * 110.99747 * 329.50005 * 13 3 2 36 36 H 1.08999 * 109.47329 * 64.78909 * 14 13 3 37 37 H 1.09001 * 109.47142 * 304.78948 * 14 13 3 38 38 H 1.07999 * 119.96890 * 359.97438 * 16 15 14 39 39 H 1.07999 * 120.03232 * 180.26925 * 17 16 15 40 40 H 1.08997 * 109.47120 * 299.99824 * 20 19 18 41 41 H 1.08997 * 109.47254 * 60.00157 * 20 19 18 42 42 H 0.96696 * 116.99941 * 179.97438 * 23 21 20 43 43 H 1.08001 * 119.97382 * 180.02562 * 28 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5963 1.9847 -0.8350 5 6 3.5406 1.4447 -0.1401 6 1 4.1542 1.8862 0.6312 7 6 4.1298 0.8830 -1.2528 8 7 3.3825 0.3457 -2.1922 9 14 5.9898 0.8851 -1.4262 10 1 6.5965 1.5447 -0.2421 11 1 6.4799 -0.5136 -1.5184 12 1 6.3715 1.6255 -2.6555 13 7 1.6651 2.0944 1.2619 14 6 1.5721 3.5508 1.0946 15 6 1.3022 4.1936 2.4307 16 6 2.3575 4.5855 3.2339 17 6 2.1128 5.1801 4.4563 18 6 0.8068 5.3794 4.8805 19 8 0.5634 5.9647 6.0826 20 6 1.6999 6.3496 6.8587 21 6 1.2381 6.9761 8.1492 22 8 0.0569 7.0826 8.3803 23 8 2.1389 7.4168 9.0414 24 6 -0.2500 4.9803 4.0755 25 7 -1.6442 5.1909 4.5252 26 8 -2.5717 4.8407 3.8177 27 8 -1.8641 5.7145 5.6027 28 6 0.0001 4.3860 2.8535 29 1 -0.3633 0.4456 0.9262 30 1 -0.3633 0.5793 -0.8489 31 1 -0.3634 -1.0248 -0.0772 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.7971 -0.0492 -2.9753 35 1 0.8019 1.7158 1.6219 36 1 0.7595 3.7864 0.4073 37 1 2.5107 3.9310 0.6915 38 1 3.3738 4.4301 2.9033 39 1 2.9373 5.4899 5.0814 40 1 2.3047 5.4698 7.0785 41 1 2.2960 7.0694 6.2979 42 1 1.7948 7.8115 9.8543 43 1 -0.8223 4.0754 2.2262 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609913495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:27 Heat of formation + Delta-G solvation = -100.242471 kcal Electronic energy + Delta-G solvation = -28874.006333 eV Core-core repulsion = 24502.342525 eV Total energy + Delta-G solvation = -4371.663809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.11253 -41.02153 -40.18928 -38.45519 -36.59557 -36.33729 -36.24022 -33.19274 -32.20218 -31.65437 -30.34794 -29.31338 -26.81185 -26.40287 -24.72398 -23.46844 -22.67894 -21.99486 -21.25665 -19.72783 -19.49648 -18.58088 -18.34113 -17.89747 -17.52553 -17.34704 -17.08651 -16.43256 -15.98906 -15.48715 -15.20998 -14.95978 -14.87394 -14.25504 -14.10897 -13.96134 -13.28344 -13.15210 -12.85954 -12.48186 -12.44349 -12.06739 -12.03609 -11.78922 -11.59939 -11.40654 -11.36318 -11.22276 -11.02971 -10.93981 -10.92175 -10.83211 -10.69164 -10.08097 -9.86055 -9.77974 -9.74490 -9.23740 -8.73365 -8.45820 -7.45239 -6.07723 -4.12927 -0.08491 0.78054 1.40766 1.45408 1.66016 1.68994 2.99052 3.12554 3.22912 3.31801 3.34345 4.07263 4.14504 4.32539 4.34415 4.39982 4.55645 4.65138 4.77391 4.83440 5.14193 5.19946 5.30456 5.48188 5.69225 5.73958 5.94897 5.98999 6.08806 6.09667 6.20557 6.31829 6.32911 6.36053 6.64331 6.76234 6.95897 7.05120 7.33498 7.36077 7.66402 7.77741 7.82179 8.09796 8.25642 8.56218 8.94163 9.52564 10.97621 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.002608 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.422185 B =10733.553601 C =12303.505110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.218 3.782 4 H 0.005 0.995 5 C -0.496 4.496 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.895 3.105 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.682 5.682 14 C 0.103 3.897 15 C -0.092 4.092 16 C -0.002 4.002 17 C -0.214 4.214 18 C 0.183 3.817 19 O -0.267 6.267 20 C 0.062 3.938 21 C 0.480 3.520 22 O -0.476 6.476 23 O -0.513 6.513 24 C -0.073 4.073 25 N 0.035 4.965 26 O -0.183 6.183 27 O -0.135 6.135 28 C -0.020 4.020 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.038 0.962 32 H 0.101 0.899 33 H 0.041 0.959 34 H 0.260 0.740 35 H 0.319 0.681 36 H 0.033 0.967 37 H 0.093 0.907 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.420 0.580 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.599 12.153 15.935 20.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C 0.112 3.888 4 H 0.023 0.977 5 C -0.535 4.535 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.314 5.314 14 C -0.026 4.026 15 C -0.094 4.094 16 C -0.021 4.021 17 C -0.233 4.233 18 C 0.135 3.865 19 O -0.178 6.178 20 C -0.015 4.015 21 C 0.319 3.681 22 O -0.360 6.360 23 O -0.327 6.327 24 C -0.158 4.158 25 N 0.552 4.448 26 O -0.392 6.392 27 O -0.356 6.356 28 C -0.039 4.039 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.119 0.881 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.137 0.863 36 H 0.051 0.949 37 H 0.111 0.889 38 H 0.170 0.830 39 H 0.168 0.832 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.281 0.719 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.328 11.856 15.530 19.541 hybrid contribution -0.198 0.260 -0.009 0.327 sum 0.130 12.116 15.522 19.691 Atomic orbital electron populations 1.21892 0.99470 0.99916 0.99600 1.21773 0.91328 1.00139 1.03193 1.19204 0.95663 0.90118 0.83848 0.97748 1.21193 0.91059 1.36979 1.04282 0.91999 1.24969 0.98154 0.95535 0.95851 1.69874 1.34698 1.39231 1.09522 0.86493 0.85648 0.77705 0.77836 1.19823 1.21104 1.21209 1.60786 1.36565 1.00652 1.33350 1.20841 1.01871 0.90738 0.89154 1.20161 0.90693 0.99439 0.99059 1.21423 1.00935 0.88932 0.90823 1.21322 0.93853 1.07916 1.00224 1.18483 0.92389 0.91364 0.84311 1.86359 1.31524 1.72960 1.26951 1.21955 0.88280 1.02075 0.89142 1.22423 0.84316 0.76336 0.85057 1.90863 1.18142 1.50684 1.76334 1.84411 1.42540 1.73226 1.32488 1.20433 0.80007 1.16396 0.98954 1.43377 1.02660 0.98357 1.00364 1.94529 1.36071 1.54503 1.54058 1.94631 1.90692 1.41858 1.08443 1.20920 0.99079 0.92186 0.91760 0.94647 0.93764 0.94250 0.88110 0.94006 0.92998 0.86321 0.94868 0.88910 0.83030 0.83167 0.86857 0.86933 0.71916 0.82536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.67 37.16 0.36 -2.41 16 2 C -0.13 -2.78 5.36 -26.73 -0.14 -2.92 16 3 C 0.22 4.95 2.02 -68.87 -0.14 4.81 16 4 H 0.00 0.12 7.85 -51.93 -0.41 -0.29 16 5 C -0.50 -12.55 8.57 -34.44 -0.30 -12.84 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.45 5.29 -17.82 -0.09 1.35 16 8 N -0.89 -24.14 11.29 55.43 0.63 -23.51 16 9 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.68 -12.66 6.26 -109.22 -0.68 -13.34 16 14 C 0.10 1.61 5.57 -4.98 -0.03 1.58 16 15 C -0.09 -1.17 5.44 -104.60 -0.57 -1.74 16 16 C 0.00 -0.03 9.69 -39.61 -0.38 -0.41 16 17 C -0.21 -1.92 9.04 -39.43 -0.36 -2.28 16 18 C 0.18 2.13 6.67 -39.21 -0.26 1.87 16 19 O -0.27 -3.11 7.68 -49.78 -0.38 -3.50 16 20 C 0.06 0.42 5.33 36.01 0.19 0.61 16 21 C 0.48 3.94 8.40 36.01 0.30 4.24 16 22 O -0.48 -6.13 17.26 -25.48 -0.44 -6.57 16 23 O -0.51 -2.49 13.42 -39.25 -0.53 -3.01 16 24 C -0.07 -1.01 6.87 -79.81 -0.55 -1.56 16 25 N 0.03 0.57 4.45 34.03 0.15 0.72 16 26 O -0.18 -3.07 18.45 -29.46 -0.54 -3.61 16 27 O -0.14 -2.36 17.24 -36.49 -0.63 -2.99 16 28 C -0.02 -0.26 9.20 -39.60 -0.36 -0.62 16 29 H 0.03 0.58 6.60 -51.92 -0.34 0.24 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.10 2.54 5.94 -51.93 -0.31 2.23 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.32 5.56 6.61 -39.29 -0.26 5.30 16 36 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 37 H 0.09 1.52 7.89 -51.93 -0.41 1.12 16 38 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.15 0.77 6.30 -52.49 -0.33 0.44 16 40 H 0.11 0.48 7.66 -51.93 -0.40 0.08 16 41 H 0.11 0.44 7.66 -51.93 -0.40 0.04 16 42 H 0.42 0.39 9.10 45.56 0.41 0.81 16 43 H 0.16 1.95 7.61 -52.49 -0.40 1.55 16 LS Contribution 373.96 15.07 5.64 5.64 Total: -1.00 -33.14 373.96 -8.64 -41.78 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -4.49 Total: 3.57 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -2.33 Total: -10.33 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.09 Total: -36.13 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -2.52 Total: -19.68 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.14 -8.64 -41.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609913495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.461 kcal (2) G-P(sol) polarization free energy of solvation -33.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds