Wall clock time and date at job start Tue Mar 31 2020 20:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47657 * 2 1 4 4 H 1.09003 * 109.46884 * 305.66351 * 3 2 1 5 5 C 1.50697 * 109.47500 * 185.65792 * 3 2 1 6 6 H 1.07999 * 119.99971 * 240.00466 * 5 3 2 7 7 C 1.37875 * 119.99739 * 59.99927 * 5 3 2 8 8 N 1.31515 * 120.00259 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00007 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46796 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.46952 * 120.00195 * 9 7 5 12 12 H 1.48498 * 109.46982 * 240.00222 * 9 7 5 13 13 N 1.46905 * 109.47000 * 65.65731 * 3 2 1 14 14 C 1.46895 * 111.00107 * 205.54352 * 13 3 2 15 15 C 1.50699 * 109.46968 * 184.79132 * 14 13 3 16 16 C 1.38285 * 119.94869 * 90.00374 * 15 14 13 17 17 C 1.38115 * 120.05988 * 179.72214 * 16 15 14 18 18 C 1.38760 * 119.94323 * 0.25022 * 17 16 15 19 19 O 1.35896 * 120.05538 * 180.02562 * 18 17 16 20 20 C 1.42903 * 117.00095 * 359.97438 * 19 18 17 21 21 C 1.50702 * 109.47084 * 180.02562 * 20 19 18 22 22 O 1.20830 * 120.00188 * 359.97438 * 21 20 19 23 23 O 1.34228 * 119.99963 * 180.02562 * 21 20 19 24 24 C 1.38713 * 119.88724 * 0.02562 * 18 17 16 25 25 N 1.47999 * 120.02423 * 179.97438 * 24 18 17 26 26 O 1.21805 * 119.99562 * 179.97438 * 25 24 18 27 27 O 1.21796 * 120.00406 * 359.97438 * 25 24 18 28 28 C 1.38163 * 119.94451 * 359.97438 * 24 18 17 29 29 H 1.09007 * 109.46583 * 295.69236 * 1 2 3 30 30 H 1.09002 * 109.46981 * 55.68897 * 1 2 3 31 31 H 1.09001 * 109.47418 * 175.69202 * 1 2 3 32 32 H 1.08999 * 109.46912 * 239.99758 * 2 1 3 33 33 H 1.09000 * 109.46998 * 120.00507 * 2 1 3 34 34 H 0.97005 * 120.00376 * 179.97438 * 8 7 5 35 35 H 1.00898 * 110.99747 * 329.50005 * 13 3 2 36 36 H 1.08999 * 109.47329 * 64.78909 * 14 13 3 37 37 H 1.09001 * 109.47142 * 304.78948 * 14 13 3 38 38 H 1.07999 * 119.96890 * 359.97438 * 16 15 14 39 39 H 1.07999 * 120.03232 * 180.26925 * 17 16 15 40 40 H 1.08997 * 109.47120 * 299.99824 * 20 19 18 41 41 H 1.08997 * 109.47254 * 60.00157 * 20 19 18 42 42 H 0.96696 * 116.99941 * 179.97438 * 23 21 20 43 43 H 1.08001 * 119.97382 * 180.02562 * 28 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5963 1.9847 -0.8350 5 6 3.5406 1.4447 -0.1401 6 1 4.1542 1.8862 0.6312 7 6 4.1298 0.8830 -1.2528 8 7 3.3825 0.3457 -2.1922 9 14 5.9898 0.8851 -1.4262 10 1 6.5965 1.5447 -0.2421 11 1 6.4799 -0.5136 -1.5184 12 1 6.3715 1.6255 -2.6555 13 7 1.6651 2.0944 1.2619 14 6 1.5721 3.5508 1.0946 15 6 1.3022 4.1936 2.4307 16 6 2.3575 4.5855 3.2339 17 6 2.1128 5.1801 4.4563 18 6 0.8068 5.3794 4.8805 19 8 0.5634 5.9647 6.0826 20 6 1.6999 6.3496 6.8587 21 6 1.2381 6.9761 8.1492 22 8 0.0569 7.0826 8.3803 23 8 2.1389 7.4168 9.0414 24 6 -0.2500 4.9803 4.0755 25 7 -1.6442 5.1909 4.5252 26 8 -2.5717 4.8407 3.8177 27 8 -1.8641 5.7145 5.6027 28 6 0.0001 4.3860 2.8535 29 1 -0.3633 0.4456 0.9262 30 1 -0.3633 0.5793 -0.8489 31 1 -0.3634 -1.0248 -0.0772 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.7971 -0.0492 -2.9753 35 1 0.8019 1.7158 1.6219 36 1 0.7595 3.7864 0.4073 37 1 2.5107 3.9310 0.6915 38 1 3.3738 4.4301 2.9033 39 1 2.9373 5.4899 5.0814 40 1 2.3047 5.4698 7.0785 41 1 2.2960 7.0694 6.2979 42 1 1.7948 7.8115 9.8543 43 1 -0.8223 4.0754 2.2262 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609913495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:26 Heat of formation + Delta-G solvation = -121.765334 kcal Electronic energy + Delta-G solvation = -28874.939635 eV Core-core repulsion = 24502.342525 eV Total energy + Delta-G solvation = -4372.597110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.23584 -41.79008 -40.95804 -39.38976 -37.88448 -37.51601 -37.11622 -34.69675 -33.50054 -32.96097 -31.41520 -30.15426 -28.49603 -27.53611 -26.03953 -24.48509 -24.12321 -22.86552 -22.17392 -21.45109 -20.39845 -19.72287 -19.17021 -18.65240 -18.60603 -18.35077 -18.04362 -17.78011 -16.87263 -16.73108 -16.40349 -16.18222 -15.76565 -15.68088 -15.38017 -14.86584 -14.54092 -14.26592 -13.93188 -13.73614 -13.63413 -13.27304 -13.09464 -12.85112 -12.84000 -12.65331 -12.63189 -12.60820 -12.43512 -12.32006 -12.21017 -12.08393 -11.93586 -11.64413 -11.54496 -11.43686 -11.01725 -10.67036 -10.40211 -9.68378 -9.03373 -8.02894 -6.14716 -1.18148 -0.09592 0.30771 0.41104 1.06715 1.08302 1.44869 1.48311 1.58108 2.20407 2.39063 2.47896 3.21607 3.25110 3.41985 3.55625 3.80848 3.87614 3.91268 3.96548 3.97825 4.16134 4.34589 4.49182 4.52661 4.57024 4.62566 4.70671 4.82535 4.89799 5.12007 5.15800 5.21720 5.27083 5.32162 5.39592 5.54445 5.60080 5.78068 5.80617 5.90935 6.36875 6.48125 6.54546 6.90577 6.92291 6.99692 7.54537 9.00684 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.002608 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.422185 B =10733.553601 C =12303.505110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C 0.224 3.776 4 H -0.027 1.027 5 C -0.505 4.505 6 H 0.061 0.939 7 C 0.007 3.993 8 N -0.923 5.923 9 Si 0.955 3.045 10 H -0.262 1.262 11 H -0.288 1.288 12 H -0.286 1.286 13 N -0.679 5.679 14 C 0.108 3.892 15 C -0.100 4.100 16 C 0.007 3.993 17 C -0.190 4.190 18 C 0.192 3.808 19 O -0.293 6.293 20 C 0.049 3.951 21 C 0.486 3.514 22 O -0.535 6.535 23 O -0.499 6.499 24 C -0.096 4.096 25 N 0.039 4.961 26 O -0.203 6.203 27 O -0.167 6.167 28 C -0.021 4.021 29 H 0.055 0.945 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.037 0.963 34 H 0.258 0.742 35 H 0.326 0.674 36 H 0.030 0.970 37 H 0.084 0.916 38 H 0.170 0.830 39 H 0.201 0.799 40 H 0.149 0.851 41 H 0.152 0.848 42 H 0.437 0.563 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.000 12.991 17.624 21.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C 0.116 3.884 4 H -0.009 1.009 5 C -0.543 4.543 6 H 0.079 0.921 7 C -0.191 4.191 8 N -0.563 5.563 9 Si 0.781 3.219 10 H -0.186 1.186 11 H -0.214 1.214 12 H -0.212 1.212 13 N -0.311 5.311 14 C -0.021 4.021 15 C -0.102 4.102 16 C -0.012 4.012 17 C -0.209 4.209 18 C 0.143 3.857 19 O -0.205 6.205 20 C -0.026 4.026 21 C 0.328 3.672 22 O -0.424 6.424 23 O -0.314 6.314 24 C -0.182 4.182 25 N 0.550 4.450 26 O -0.410 6.410 27 O -0.382 6.382 28 C -0.040 4.040 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.145 0.855 36 H 0.048 0.952 37 H 0.102 0.898 38 H 0.187 0.813 39 H 0.218 0.782 40 H 0.166 0.834 41 H 0.169 0.831 42 H 0.300 0.700 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.925 12.732 17.290 21.670 hybrid contribution -0.897 0.064 -0.442 1.002 sum 2.029 12.797 16.847 21.253 Atomic orbital electron populations 1.21769 0.96632 1.01056 1.00416 1.21612 0.93900 0.99336 1.01254 1.18958 0.94407 0.90436 0.84569 1.00901 1.21505 0.92477 1.36325 1.04041 0.92096 1.25703 1.02107 0.95502 0.95788 1.70018 1.36206 1.40150 1.09951 0.85550 0.80975 0.77368 0.77959 1.18591 1.21415 1.21245 1.60661 1.37128 1.02374 1.30932 1.20741 1.01349 0.88964 0.91062 1.19833 0.91265 1.00840 0.98260 1.21684 1.00981 0.87638 0.90849 1.21743 0.93754 1.05742 0.99642 1.18660 0.92617 0.90286 0.84121 1.86338 1.34534 1.72605 1.27014 1.22494 0.87248 1.04473 0.88364 1.22790 0.83658 0.75112 0.85618 1.90858 1.20578 1.53343 1.77650 1.84384 1.41463 1.72584 1.32958 1.20599 0.78794 1.18634 1.00128 1.43730 1.03693 0.97666 0.99949 1.94500 1.37436 1.54974 1.54070 1.94618 1.91301 1.43116 1.09200 1.20816 0.99199 0.92409 0.91626 0.92561 0.94392 0.92731 0.91415 0.94434 0.93265 0.85547 0.95160 0.89774 0.81270 0.78188 0.83355 0.83092 0.69954 0.82998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.09 9.67 71.98 0.70 -4.40 16 2 C -0.12 -5.45 5.36 30.59 0.16 -5.29 16 3 C 0.22 10.24 2.02 44.17 0.09 10.33 16 4 H -0.03 -1.36 7.85 -2.39 -0.02 -1.38 16 5 C -0.50 -25.45 8.57 25.60 0.22 -25.23 16 6 H 0.06 3.02 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.36 5.29 84.65 0.45 0.81 16 8 N -0.92 -50.76 11.29 21.45 0.24 -50.52 16 9 Si 0.95 41.11 29.54 68.60 2.03 43.14 16 10 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 11 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 13 N -0.68 -24.70 6.26 -499.47 -3.13 -27.83 16 14 C 0.11 3.28 5.57 85.56 0.48 3.76 16 15 C -0.10 -2.38 5.44 -19.85 -0.11 -2.49 16 16 C 0.01 0.12 9.69 22.25 0.22 0.34 16 17 C -0.19 -2.48 9.04 22.37 0.20 -2.28 16 18 C 0.19 3.95 6.67 22.51 0.15 4.10 16 19 O -0.29 -6.17 7.68 -63.34 -0.49 -6.66 16 20 C 0.05 0.46 5.33 71.24 0.38 0.84 16 21 C 0.49 6.87 8.40 71.24 0.60 7.47 16 22 O -0.54 -13.63 17.26 28.38 0.49 -13.14 16 23 O -0.50 -3.31 13.42 -51.40 -0.69 -4.00 16 24 C -0.10 -2.58 6.87 36.47 0.25 -2.33 16 25 N 0.04 1.28 4.45 -46.25 -0.21 1.07 16 26 O -0.20 -7.05 18.45 18.88 0.35 -6.70 16 27 O -0.17 -6.00 17.24 25.61 0.44 -5.56 16 28 C -0.02 -0.53 9.20 22.26 0.20 -0.32 16 29 H 0.06 1.78 6.60 -2.38 -0.02 1.76 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.07 3.49 5.94 -2.39 -0.01 3.48 16 33 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.26 13.65 8.31 -92.70 -0.77 12.88 16 35 H 0.33 11.05 6.61 -89.70 -0.59 10.46 16 36 H 0.03 0.94 8.08 -2.39 -0.02 0.92 16 37 H 0.08 2.70 7.89 -2.39 -0.02 2.68 16 38 H 0.17 2.45 8.06 -2.91 -0.02 2.42 16 39 H 0.20 0.58 6.30 -2.91 -0.02 0.56 16 40 H 0.15 0.40 7.66 -2.39 -0.02 0.39 16 41 H 0.15 0.30 7.66 -2.39 -0.02 0.28 16 42 H 0.44 -0.23 9.10 -74.06 -0.67 -0.91 16 43 H 0.15 3.85 7.61 -2.91 -0.02 3.83 16 Total: -1.00 -75.86 373.96 2.84 -73.02 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -0.19 Total: 11.87 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 3.99 Total: -14.69 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -3.09 Total: -77.27 kcal Atomic # 8 Polarization: -36.16 SS G_CDS: 0.10 Total: -36.06 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -75.86 2.84 -73.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609913495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.744 kcal (2) G-P(sol) polarization free energy of solvation -75.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds