Wall clock time and date at job start Tue Mar 31 2020 22:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28414 * 125.06128 * 2 1 4 4 C 1.31637 * 110.79551 * 180.30092 * 3 2 1 5 5 C 1.48451 * 126.21474 * 179.73653 * 4 3 2 6 6 C 1.39733 * 120.53589 * 359.97292 * 5 4 3 7 7 C 1.38417 * 118.32222 * 179.97438 * 6 5 4 8 8 C 1.38312 * 119.27496 * 0.02562 * 7 6 5 9 9 N 1.31881 * 121.02314 * 0.02562 * 8 7 6 10 10 C 1.31747 * 121.84878 * 359.67648 * 9 8 7 11 11 C 1.40683 * 107.57452 * 359.71639 * 4 3 2 12 12 C 1.36664 * 125.06035 * 179.81440 * 2 1 3 13 13 C 1.47178 * 126.77439 * 359.97438 * 12 2 1 14 14 O 1.21658 * 119.99863 * 4.66577 * 13 12 2 15 15 N 1.34777 * 120.00052 * 184.66491 * 13 12 2 16 16 C 1.40515 * 119.99927 * 174.73783 * 15 13 12 17 17 C 1.40668 * 126.08390 * 359.97438 * 16 15 13 18 18 N 1.30914 * 108.38301 * 179.73634 * 17 16 15 19 19 N 1.40062 * 108.41317 * 0.44080 * 18 17 16 20 20 C 1.37312 * 126.06780 * 179.81172 * 19 18 17 21 21 H 1.08004 * 119.99947 * 179.68980 * 20 19 18 22 22 C 1.38985 * 120.00167 * 359.42001 * 20 19 18 23 23 N 1.31301 * 119.99836 * 0.27562 * 22 20 19 24 24 Si 1.86798 * 120.00495 * 180.27246 * 22 20 19 25 25 H 1.48500 * 109.46702 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47243 * 119.99970 * 24 22 20 27 27 H 1.48500 * 109.47370 * 240.00189 * 24 22 20 28 28 C 1.35696 * 126.08573 * 180.02562 * 16 15 13 29 29 H 1.09000 * 109.46828 * 274.92196 * 1 2 3 30 30 H 1.09006 * 109.46818 * 34.91998 * 1 2 3 31 31 H 1.08997 * 109.47201 * 154.91975 * 1 2 3 32 32 H 1.08002 * 120.84062 * 0.02562 * 6 5 4 33 33 H 1.08000 * 120.36444 * 180.02562 * 7 6 5 34 34 H 1.07999 * 119.48536 * 179.97438 * 8 7 6 35 35 H 1.08001 * 119.70215 * 180.29864 * 10 9 8 36 36 H 1.07997 * 127.34896 * 179.97438 * 11 4 3 37 37 H 0.97000 * 119.99869 * 354.74087 * 15 13 12 38 38 H 1.08000 * 125.81226 * 0.02562 * 17 16 15 39 39 H 0.96993 * 120.00045 * 180.02562 * 23 22 20 40 40 H 1.08003 * 126.24972 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2027 1.0511 0.0000 4 6 3.4785 0.7267 -0.0065 5 6 4.6236 1.6714 -0.0140 6 6 4.4054 3.0516 -0.0154 7 6 5.5064 3.8905 -0.0220 8 6 6.7755 3.3408 -0.0276 9 7 6.9501 2.0336 -0.0271 10 6 5.9329 1.1964 -0.0151 11 6 3.5597 -0.6777 -0.0044 12 6 2.2501 -1.1187 0.0036 13 6 1.7913 -2.5171 0.0087 14 8 0.6038 -2.7679 -0.0757 15 7 2.6866 -3.5197 0.1068 16 6 2.2437 -4.8482 0.2230 17 6 0.9037 -5.2754 0.2508 18 7 0.8884 -6.5796 0.3626 19 7 2.2120 -7.0343 0.4206 20 6 2.6130 -8.3419 0.5422 21 1 3.6653 -8.5834 0.5726 22 6 1.6648 -9.3541 0.6320 23 7 0.3856 -9.0605 0.5950 24 14 2.2102 -11.1323 0.8051 25 1 3.6938 -11.1954 0.8222 26 1 1.6768 -11.6924 2.0727 27 1 1.6938 -11.9224 -0.3413 28 6 3.0325 -5.9472 0.3294 29 1 -0.3633 0.0882 1.0239 30 1 -0.3633 0.8427 -0.5883 31 1 -0.3633 -0.9307 -0.4356 32 1 3.4030 3.4537 -0.0106 33 1 5.3758 4.9626 -0.0229 34 1 7.6370 3.9922 -0.0332 35 1 6.1158 0.1320 -0.0103 36 1 4.4546 -1.2823 -0.0087 37 1 3.6366 -3.3242 0.0972 38 1 0.0353 -4.6366 0.1859 39 1 -0.2761 -9.7668 0.6580 40 1 4.1124 -5.9597 0.3397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001631318194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:12 Heat of formation + Delta-G solvation = 170.146513 kcal Electronic energy + Delta-G solvation = -26951.340896 eV Core-core repulsion = 22963.296456 eV Total energy + Delta-G solvation = -3988.044441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.67258 -40.19453 -39.91252 -38.49619 -34.73579 -34.07029 -33.31276 -32.51889 -31.31116 -31.08055 -30.23902 -27.83403 -27.00522 -25.13176 -24.12880 -23.77810 -22.85233 -21.37584 -20.96618 -19.61734 -19.48555 -18.03363 -17.48797 -17.09314 -16.43754 -16.41297 -15.80022 -15.59146 -15.45170 -15.16381 -14.52396 -14.26555 -14.16866 -14.01839 -13.83142 -13.58707 -13.30356 -13.23258 -12.99034 -12.91740 -12.48055 -12.11554 -11.74698 -11.51672 -11.32857 -11.01215 -10.99067 -10.54560 -10.53296 -10.33496 -9.83235 -9.76692 -9.52133 -9.28425 -9.21132 -8.90077 -8.51078 -8.14356 -6.80500 -6.62322 -4.29690 0.57306 1.00581 1.23010 2.24563 2.51964 2.89170 3.01988 3.08122 3.19445 3.40093 3.65522 3.70244 3.80383 4.03010 4.23686 4.34548 4.40064 4.62146 4.64396 4.70818 4.85236 4.94140 4.96205 5.07524 5.12996 5.14475 5.38973 5.41610 5.46344 5.60373 5.81418 5.99105 6.16099 6.19084 6.34205 6.40701 6.55192 6.76814 6.86820 6.97106 7.14718 7.69487 7.76600 7.82231 8.02172 8.16173 8.47510 8.68097 9.29450 9.58062 10.33573 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020979 B = 0.002144 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.369168 B =13055.801322 C =14366.643049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.250 5.250 3 N -0.268 5.268 4 C 0.057 3.943 5 C -0.047 4.047 6 C -0.057 4.057 7 C -0.172 4.172 8 C 0.094 3.906 9 N -0.481 5.481 10 C 0.117 3.883 11 C -0.181 4.181 12 C -0.011 4.011 13 C 0.570 3.430 14 O -0.536 6.536 15 N -0.600 5.600 16 C -0.063 4.063 17 C -0.029 4.029 18 N -0.260 5.260 19 N -0.140 5.140 20 C -0.321 4.321 21 H 0.118 0.882 22 C 0.046 3.954 23 N -0.768 5.768 24 Si 0.936 3.064 25 H -0.262 1.262 26 H -0.274 1.274 27 H -0.273 1.273 28 C -0.079 4.079 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.123 0.877 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.156 0.844 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.401 0.599 38 H 0.176 0.824 39 H 0.275 0.725 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.711 20.259 -0.968 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.037 5.037 3 N -0.103 5.103 4 C -0.098 4.098 5 C -0.050 4.050 6 C -0.084 4.084 7 C -0.191 4.191 8 C -0.063 4.063 9 N -0.189 5.189 10 C -0.042 4.042 11 C -0.210 4.210 12 C -0.139 4.139 13 C 0.355 3.645 14 O -0.414 6.414 15 N -0.241 5.241 16 C -0.169 4.169 17 C -0.204 4.204 18 N -0.091 5.091 19 N 0.093 4.907 20 C -0.454 4.454 21 H 0.136 0.864 22 C -0.172 4.172 23 N -0.395 5.395 24 Si 0.759 3.241 25 H -0.186 1.186 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.231 4.231 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.141 0.859 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.173 0.827 35 H 0.178 0.822 36 H 0.182 0.818 37 H 0.235 0.765 38 H 0.193 0.807 39 H 0.086 0.914 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.810 19.459 -0.922 20.329 hybrid contribution 0.864 -0.123 0.051 0.874 sum 6.674 19.336 -0.871 20.474 Atomic orbital electron populations 1.22532 0.71911 1.06823 1.04816 1.45540 1.08048 1.01456 1.48636 1.73270 1.03144 1.13526 1.20316 1.19988 0.89947 0.91913 1.07934 1.18764 0.91806 0.92292 1.02173 1.21666 1.00056 0.92206 0.94454 1.22103 0.93465 1.01259 1.02320 1.22823 0.96737 0.91527 0.95254 1.67711 1.34797 1.04317 1.12052 1.22812 0.86706 1.00138 0.94562 1.22145 0.96032 0.94068 1.08740 1.21456 0.90824 0.90077 1.11581 1.16623 0.85942 0.82296 0.79613 1.90666 1.16035 1.83520 1.51204 1.42078 1.08659 1.04241 1.69097 1.17185 0.93708 0.81687 1.24318 1.24103 0.95558 0.93223 1.07551 1.78278 0.96644 1.08618 1.25576 1.44578 1.03206 1.04499 1.38387 1.19956 0.94498 0.78364 1.52537 0.86414 1.25666 0.94828 1.01224 0.95465 1.70221 1.00240 1.33936 1.35061 0.85745 0.79471 0.80314 0.78533 1.18611 1.19884 1.19871 1.21264 0.95809 0.86617 1.19390 0.89613 0.89038 0.85925 0.84282 0.84580 0.82695 0.82220 0.81812 0.76510 0.80714 0.91426 0.83448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.99 59.85 0.66 1.50 16 2 N -0.25 -3.33 3.75 -63.91 -0.24 -3.57 16 3 N -0.27 -3.53 11.65 33.40 0.39 -3.14 16 4 C 0.06 0.70 7.00 -82.82 -0.58 0.12 16 5 C -0.05 -0.50 5.89 -104.74 -0.62 -1.11 16 6 C -0.06 -0.53 9.82 -38.96 -0.38 -0.91 16 7 C -0.17 -1.28 10.10 -39.49 -0.40 -1.68 16 8 C 0.09 0.77 11.17 -17.50 -0.20 0.57 16 9 N -0.48 -5.03 10.35 -12.98 -0.13 -5.16 16 10 C 0.12 1.17 10.75 -17.20 -0.18 0.99 16 11 C -0.18 -2.15 9.86 -38.68 -0.38 -2.53 16 12 C -0.01 -0.16 6.94 -82.10 -0.57 -0.73 16 13 C 0.57 9.69 7.76 -12.63 -0.10 9.59 16 14 O -0.54 -10.48 11.72 5.23 0.06 -10.42 16 15 N -0.60 -10.18 5.45 -11.04 -0.06 -10.24 16 16 C -0.06 -1.39 6.90 -83.87 -0.58 -1.97 16 17 C -0.03 -0.72 10.85 -17.03 -0.18 -0.91 16 18 N -0.26 -7.34 10.40 30.81 0.32 -7.02 16 19 N -0.14 -3.71 3.74 -11.41 -0.04 -3.76 16 20 C -0.32 -8.26 10.25 -14.82 -0.15 -8.41 16 21 H 0.12 2.70 7.83 -52.48 -0.41 2.29 16 22 C 0.05 1.15 5.50 -17.50 -0.10 1.05 16 23 N -0.77 -20.98 11.81 55.49 0.66 -20.33 16 24 Si 0.94 18.48 29.55 -169.99 -5.02 13.46 16 25 H -0.26 -4.92 7.11 56.52 0.40 -4.51 16 26 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 27 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 28 C -0.08 -1.79 11.49 -16.38 -0.19 -1.98 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.12 1.48 5.94 -51.93 -0.31 1.18 16 32 H 0.14 1.20 7.94 -52.49 -0.42 0.78 16 33 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.16 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.16 1.28 7.13 -52.49 -0.37 0.90 16 36 H 0.16 1.40 6.97 -52.49 -0.37 1.04 16 37 H 0.40 5.22 7.84 -40.82 -0.32 4.90 16 38 H 0.18 4.30 5.93 -52.49 -0.31 3.99 16 39 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.15 2.73 8.06 -52.48 -0.42 2.31 16 LS Contribution 353.38 15.07 5.33 5.33 Total: -1.00 -34.03 353.38 -6.46 -40.49 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -3.76 Total: 10.77 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -3.95 Total: -6.41 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.89 Total: -53.21 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.06 Total: -10.42 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.02 Total: 13.46 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.03 -6.46 -40.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631318194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.633 kcal (2) G-P(sol) polarization free energy of solvation -34.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds