Wall clock time and date at job start Tue Mar 31 2020 22:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28414 * 125.06128 * 2 1 4 4 C 1.31637 * 110.79551 * 180.30092 * 3 2 1 5 5 C 1.48451 * 126.21474 * 179.73653 * 4 3 2 6 6 C 1.39733 * 120.53589 * 359.97292 * 5 4 3 7 7 C 1.38417 * 118.32222 * 179.97438 * 6 5 4 8 8 C 1.38312 * 119.27496 * 0.02562 * 7 6 5 9 9 N 1.31881 * 121.02314 * 0.02562 * 8 7 6 10 10 C 1.31747 * 121.84878 * 359.67648 * 9 8 7 11 11 C 1.40683 * 107.57452 * 359.71639 * 4 3 2 12 12 C 1.36664 * 125.06035 * 179.81440 * 2 1 3 13 13 C 1.47178 * 126.77439 * 359.97438 * 12 2 1 14 14 O 1.21658 * 119.99863 * 4.66577 * 13 12 2 15 15 N 1.34777 * 120.00052 * 184.66491 * 13 12 2 16 16 C 1.40515 * 119.99927 * 174.73783 * 15 13 12 17 17 C 1.40668 * 126.08390 * 359.97438 * 16 15 13 18 18 N 1.30914 * 108.38301 * 179.73634 * 17 16 15 19 19 N 1.40062 * 108.41317 * 0.44080 * 18 17 16 20 20 C 1.37312 * 126.06780 * 179.81172 * 19 18 17 21 21 H 1.08004 * 119.99947 * 179.68980 * 20 19 18 22 22 C 1.38985 * 120.00167 * 359.42001 * 20 19 18 23 23 N 1.31301 * 119.99836 * 0.27562 * 22 20 19 24 24 Si 1.86798 * 120.00495 * 180.27246 * 22 20 19 25 25 H 1.48500 * 109.46702 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47243 * 119.99970 * 24 22 20 27 27 H 1.48500 * 109.47370 * 240.00189 * 24 22 20 28 28 C 1.35696 * 126.08573 * 180.02562 * 16 15 13 29 29 H 1.09000 * 109.46828 * 274.92196 * 1 2 3 30 30 H 1.09006 * 109.46818 * 34.91998 * 1 2 3 31 31 H 1.08997 * 109.47201 * 154.91975 * 1 2 3 32 32 H 1.08002 * 120.84062 * 0.02562 * 6 5 4 33 33 H 1.08000 * 120.36444 * 180.02562 * 7 6 5 34 34 H 1.07999 * 119.48536 * 179.97438 * 8 7 6 35 35 H 1.08001 * 119.70215 * 180.29864 * 10 9 8 36 36 H 1.07997 * 127.34896 * 179.97438 * 11 4 3 37 37 H 0.97000 * 119.99869 * 354.74087 * 15 13 12 38 38 H 1.08000 * 125.81226 * 0.02562 * 17 16 15 39 39 H 0.96993 * 120.00045 * 180.02562 * 23 22 20 40 40 H 1.08003 * 126.24972 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2027 1.0511 0.0000 4 6 3.4785 0.7267 -0.0065 5 6 4.6236 1.6714 -0.0140 6 6 4.4054 3.0516 -0.0154 7 6 5.5064 3.8905 -0.0220 8 6 6.7755 3.3408 -0.0276 9 7 6.9501 2.0336 -0.0271 10 6 5.9329 1.1964 -0.0151 11 6 3.5597 -0.6777 -0.0044 12 6 2.2501 -1.1187 0.0036 13 6 1.7913 -2.5171 0.0087 14 8 0.6038 -2.7679 -0.0757 15 7 2.6866 -3.5197 0.1068 16 6 2.2437 -4.8482 0.2230 17 6 0.9037 -5.2754 0.2508 18 7 0.8884 -6.5796 0.3626 19 7 2.2120 -7.0343 0.4206 20 6 2.6130 -8.3419 0.5422 21 1 3.6653 -8.5834 0.5726 22 6 1.6648 -9.3541 0.6320 23 7 0.3856 -9.0605 0.5950 24 14 2.2102 -11.1323 0.8051 25 1 3.6938 -11.1954 0.8222 26 1 1.6768 -11.6924 2.0727 27 1 1.6938 -11.9224 -0.3413 28 6 3.0325 -5.9472 0.3294 29 1 -0.3633 0.0882 1.0239 30 1 -0.3633 0.8427 -0.5883 31 1 -0.3633 -0.9307 -0.4356 32 1 3.4030 3.4537 -0.0106 33 1 5.3758 4.9626 -0.0229 34 1 7.6370 3.9922 -0.0332 35 1 6.1158 0.1320 -0.0103 36 1 4.4546 -1.2823 -0.0087 37 1 3.6366 -3.3242 0.0972 38 1 0.0353 -4.6366 0.1859 39 1 -0.2761 -9.7668 0.6580 40 1 4.1124 -5.9597 0.3397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001631318194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:12 Heat of formation + Delta-G solvation = 147.015637 kcal Electronic energy + Delta-G solvation = -26952.343926 eV Core-core repulsion = 22963.296456 eV Total energy + Delta-G solvation = -3989.047471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.66567 -41.68482 -40.84979 -40.03514 -36.14794 -35.25557 -34.90850 -33.26290 -32.46879 -32.02382 -31.90498 -29.54279 -27.88246 -26.90767 -25.07859 -24.53646 -23.96543 -22.86068 -22.31378 -21.22221 -20.73367 -19.42152 -18.92399 -17.83132 -17.45170 -17.41361 -17.28036 -16.90015 -16.57633 -16.45303 -15.96812 -15.63456 -15.14811 -15.03440 -14.88772 -14.85616 -14.80021 -14.48887 -13.97012 -13.77562 -13.49109 -13.39177 -13.28199 -12.93822 -12.84290 -12.79151 -12.02390 -11.95876 -11.93558 -11.34255 -11.06251 -10.97812 -10.80086 -10.50864 -10.44219 -10.27993 -10.09708 -9.33623 -8.55447 -8.46766 -6.23689 -0.14391 0.11377 0.34949 1.24517 1.28257 1.41954 1.60217 1.60676 1.74706 2.01321 2.04166 2.24271 2.57521 2.86445 3.00212 3.10067 3.18138 3.46361 3.62867 3.81529 4.01509 4.05284 4.17436 4.18462 4.27798 4.40988 4.44725 4.57073 4.58290 4.66184 4.69525 4.87300 5.01058 5.05368 5.14962 5.26047 5.28529 5.35260 5.39536 5.58019 5.77606 5.95973 6.28275 6.56981 6.72868 6.87627 7.03606 7.19357 7.45908 7.67448 8.52689 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020979 B = 0.002144 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.369168 B =13055.801322 C =14366.643049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.256 5.256 3 N -0.274 5.274 4 C 0.053 3.947 5 C -0.066 4.066 6 C -0.065 4.065 7 C -0.164 4.164 8 C 0.091 3.909 9 N -0.505 5.505 10 C 0.111 3.889 11 C -0.163 4.163 12 C -0.036 4.036 13 C 0.576 3.424 14 O -0.565 6.565 15 N -0.593 5.593 16 C -0.046 4.046 17 C -0.053 4.053 18 N -0.310 5.310 19 N -0.167 5.167 20 C -0.351 4.351 21 H 0.143 0.857 22 C -0.007 4.007 23 N -0.824 5.824 24 Si 1.018 2.982 25 H -0.240 1.240 26 H -0.274 1.274 27 H -0.274 1.274 28 C -0.073 4.073 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.142 0.858 33 H 0.167 0.833 34 H 0.184 0.816 35 H 0.175 0.825 36 H 0.197 0.803 37 H 0.422 0.578 38 H 0.171 0.829 39 H 0.276 0.724 40 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.813 21.853 -0.934 24.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.044 5.044 3 N -0.109 5.109 4 C -0.101 4.101 5 C -0.070 4.070 6 C -0.092 4.092 7 C -0.184 4.184 8 C -0.065 4.065 9 N -0.214 5.214 10 C -0.047 4.047 11 C -0.192 4.192 12 C -0.164 4.164 13 C 0.362 3.638 14 O -0.445 6.445 15 N -0.237 5.237 16 C -0.152 4.152 17 C -0.229 4.229 18 N -0.142 5.142 19 N 0.064 4.936 20 C -0.482 4.482 21 H 0.160 0.840 22 C -0.219 4.219 23 N -0.452 5.452 24 Si 0.837 3.163 25 H -0.163 1.163 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.224 4.224 29 H 0.113 0.887 30 H 0.133 0.867 31 H 0.123 0.877 32 H 0.160 0.840 33 H 0.185 0.815 34 H 0.201 0.799 35 H 0.192 0.808 36 H 0.214 0.786 37 H 0.260 0.740 38 H 0.188 0.812 39 H 0.086 0.914 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 8.956 21.097 -0.892 22.937 hybrid contribution -0.031 -0.271 0.015 0.273 sum 8.925 20.826 -0.876 22.675 Atomic orbital electron populations 1.22625 0.71058 1.06887 1.05769 1.45776 1.08738 1.01228 1.48648 1.73269 1.03760 1.13385 1.20439 1.20318 0.90063 0.92464 1.07245 1.18810 0.91488 0.92683 1.04036 1.21858 1.00926 0.92078 0.94348 1.22416 0.92530 1.02662 1.00753 1.23382 0.98128 0.91241 0.93776 1.67761 1.35100 1.05450 1.13042 1.23041 0.86400 1.00998 0.94276 1.22561 0.96076 0.94291 1.06225 1.21109 0.91984 0.88742 1.14528 1.17003 0.85418 0.83381 0.77950 1.90662 1.17537 1.84270 1.52023 1.41919 1.09947 1.02307 1.69551 1.17201 0.92325 0.83815 1.21858 1.24198 0.97143 0.92849 1.08710 1.78171 0.98731 1.10044 1.27242 1.44848 1.03078 1.05690 1.39977 1.20660 0.95879 0.78565 1.53097 0.84018 1.26866 0.94556 1.06142 0.94313 1.70396 1.01880 1.35535 1.37408 0.84547 0.80084 0.73606 0.78062 1.16250 1.19903 1.19900 1.22017 0.97606 0.85608 1.17176 0.88650 0.86657 0.87707 0.84047 0.81499 0.79926 0.80812 0.78625 0.73952 0.81230 0.91424 0.79171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.60 10.99 127.77 1.40 3.01 16 2 N -0.26 -6.64 3.75 -356.12 -1.33 -7.98 16 3 N -0.27 -6.84 11.65 -48.23 -0.56 -7.41 16 4 C 0.05 1.21 7.00 42.49 0.30 1.51 16 5 C -0.07 -1.28 5.89 -19.94 -0.12 -1.40 16 6 C -0.07 -1.07 9.82 22.67 0.22 -0.85 16 7 C -0.16 -1.95 10.10 22.33 0.23 -1.73 16 8 C 0.09 1.23 11.17 84.70 0.95 2.18 16 9 N -0.51 -9.36 10.35 -194.98 -2.02 -11.38 16 10 C 0.11 1.99 10.75 84.95 0.91 2.90 16 11 C -0.16 -3.51 9.86 22.85 0.23 -3.28 16 12 C -0.04 -0.98 6.94 40.73 0.28 -0.69 16 13 C 0.58 19.38 7.76 86.59 0.67 20.06 16 14 O -0.56 -22.72 11.72 -4.22 -0.05 -22.77 16 15 N -0.59 -19.40 5.45 -307.08 -1.67 -21.07 16 16 C -0.05 -2.00 6.90 37.75 0.26 -1.74 16 17 C -0.05 -2.80 10.85 85.42 0.93 -1.87 16 18 N -0.31 -18.21 10.40 -56.45 -0.59 -18.80 16 19 N -0.17 -9.02 3.74 -190.00 -0.71 -9.73 16 20 C -0.35 -18.10 10.25 84.01 0.86 -17.24 16 21 H 0.14 6.30 7.83 -2.91 -0.02 6.28 16 22 C -0.01 -0.37 5.50 84.95 0.47 0.10 16 23 N -0.82 -46.87 11.81 21.66 0.26 -46.62 16 24 Si 1.02 37.92 29.55 68.60 2.03 39.95 16 25 H -0.24 -7.95 7.11 99.48 0.71 -7.25 16 26 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 27 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 28 C -0.07 -3.24 11.49 83.38 0.96 -2.28 16 29 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.11 1.81 8.14 -2.38 -0.02 1.80 16 31 H 0.10 2.64 5.94 -2.39 -0.01 2.62 16 32 H 0.14 2.18 7.94 -2.91 -0.02 2.16 16 33 H 0.17 0.89 8.06 -2.91 -0.02 0.86 16 34 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.17 2.34 7.13 -2.91 -0.02 2.32 16 36 H 0.20 2.68 6.97 -2.91 -0.02 2.66 16 37 H 0.42 9.88 7.84 -92.71 -0.73 9.16 16 38 H 0.17 8.84 5.93 -2.91 -0.02 8.83 16 39 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 40 H 0.19 6.46 8.06 -2.91 -0.02 6.43 16 Total: -1.00 -77.62 353.38 4.29 -73.33 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: 0.40 Total: 33.79 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 8.55 Total: -1.33 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -6.63 Total: -122.97 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.05 Total: -22.77 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Total: -77.62 4.29 -73.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631318194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.346 kcal (2) G-P(sol) polarization free energy of solvation -77.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds