Wall clock time and date at job start Tue Mar 31 2020 20:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99773 * 2 1 4 4 C 1.52996 * 109.47259 * 306.78325 * 3 2 1 5 5 C 1.50696 * 109.46739 * 66.78100 * 3 2 1 6 6 O 1.20827 * 119.99641 * 141.45434 * 5 3 2 7 7 O 1.34228 * 120.00637 * 321.45413 * 5 3 2 8 8 C 1.45198 * 117.00151 * 179.97438 * 7 5 3 9 9 C 1.53002 * 109.46820 * 180.02562 * 8 7 5 10 10 C 1.50700 * 112.99916 * 44.27911 * 9 8 7 11 11 H 1.08006 * 119.99802 * 245.03056 * 10 9 8 12 12 C 1.37877 * 120.00580 * 65.03265 * 10 9 8 13 13 N 1.31513 * 119.99583 * 5.14526 * 12 10 9 14 14 Si 1.86797 * 120.00374 * 185.15493 * 12 10 9 15 15 H 1.48495 * 109.46958 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47281 * 119.99467 * 14 12 10 17 17 H 1.48500 * 109.46768 * 239.99800 * 14 12 10 18 18 C 1.54029 * 113.82035 * 272.28901 * 9 8 7 19 19 O 1.44172 * 85.51953 * 223.19770 * 18 9 8 20 20 C 1.44176 * 93.34157 * 24.19369 * 19 18 9 21 21 C 1.50702 * 109.46681 * 186.78049 * 3 2 1 22 22 C 1.38210 * 120.01541 * 355.48138 * 21 3 2 23 23 C 1.38227 * 120.02536 * 179.97438 * 22 21 3 24 24 C 1.38264 * 120.05146 * 0.02562 * 23 22 21 25 25 C 1.38180 * 120.02630 * 0.02562 * 24 23 22 26 26 C 1.38440 * 120.00579 * 175.20538 * 21 3 2 27 27 F 1.35100 * 120.03045 * 359.97438 * 26 21 3 28 28 H 1.09000 * 109.47304 * 182.52601 * 1 2 3 29 29 H 1.08995 * 109.47219 * 302.52138 * 1 2 3 30 30 H 1.08999 * 109.47718 * 62.52333 * 1 2 3 31 31 H 1.08994 * 109.47284 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.46950 * 300.00123 * 4 3 2 33 33 H 1.09001 * 109.47167 * 59.99577 * 4 3 2 34 34 H 1.09001 * 109.47384 * 299.99653 * 8 7 5 35 35 H 1.08998 * 109.47250 * 60.00411 * 8 7 5 36 36 H 0.97001 * 120.00339 * 179.97438 * 13 12 10 37 37 H 1.09003 * 113.86396 * 337.34638 * 18 9 8 38 38 H 1.09005 * 113.86811 * 109.04689 * 18 9 8 39 39 H 1.09007 * 113.86184 * 221.66107 * 20 19 18 40 40 H 1.08993 * 113.98507 * 89.96721 * 20 19 18 41 41 H 1.08006 * 119.99027 * 359.95140 * 22 21 3 42 42 H 1.07999 * 119.97130 * 179.97438 * 23 22 21 43 43 H 1.07995 * 119.98873 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.01501 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4286 2.1227 -1.1553 5 6 1.7027 1.9922 1.3057 6 8 2.5390 2.6849 1.8355 7 8 0.4999 1.8343 1.8802 8 6 0.2741 2.5248 3.1374 9 6 -1.1415 2.2268 3.6357 10 6 -1.5148 0.7720 3.5130 11 1 -2.3082 0.4727 2.8440 12 6 -0.8437 -0.1771 4.2545 13 7 0.0519 0.1952 5.1428 14 14 -1.2062 -1.9914 3.9975 15 1 -2.2466 -2.1445 2.9490 16 1 0.0337 -2.6884 3.5706 17 1 -1.6944 -2.5835 5.2688 18 6 -2.2093 3.1939 3.0908 19 8 -2.7244 3.2045 4.4373 20 6 -1.4562 2.8354 5.0153 21 6 3.5034 1.1905 -0.1678 22 6 4.1019 -0.0549 -0.1980 23 6 5.4714 -0.1607 -0.3524 24 6 6.2443 0.9791 -0.4762 25 6 5.6483 2.2254 -0.4452 26 6 4.2755 2.3323 -0.2973 27 9 3.6910 3.5500 -0.2740 28 1 -0.3634 -1.0266 0.0453 29 1 -0.3633 0.5525 0.8665 30 1 -0.3634 0.4741 -0.9117 31 1 1.8715 3.1186 -1.1550 32 1 1.6509 1.6260 -2.0997 33 1 0.3485 2.2058 -1.0339 34 1 0.9986 2.1815 3.8758 35 1 0.3885 3.5984 2.9878 36 1 0.5239 -0.4724 5.6648 37 1 -1.8093 4.1538 2.7640 38 1 -2.8842 2.7417 2.3640 39 1 -1.5337 2.0988 5.8151 40 1 -0.8248 3.6844 5.2772 41 1 3.4993 -0.9459 -0.1007 42 1 5.9382 -1.1343 -0.3756 43 1 7.3142 0.8953 -0.5964 44 1 6.2522 3.1155 -0.5414 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650485835.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:10 Heat of formation + Delta-G solvation = -143.204565 kcal Electronic energy + Delta-G solvation = -31468.710009 eV Core-core repulsion = 27075.263263 eV Total energy + Delta-G solvation = -4393.446747 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.82308 -40.53953 -39.35218 -38.70567 -37.54250 -35.80158 -32.90313 -32.67550 -30.68697 -30.04830 -29.35395 -26.83279 -25.71903 -25.38405 -24.63968 -23.67982 -22.62921 -22.20013 -19.93524 -19.02021 -17.70824 -17.64146 -16.84536 -16.32281 -16.10736 -15.90555 -15.56131 -15.43180 -15.19552 -14.78897 -14.71113 -14.52857 -14.37836 -14.17918 -14.06426 -13.50403 -13.20101 -12.95181 -12.72126 -12.46253 -12.31628 -12.25942 -11.98749 -11.85328 -11.77992 -11.63896 -11.02927 -10.98986 -10.84364 -10.61374 -10.48222 -10.13590 -9.95051 -9.78953 -9.45146 -9.31639 -9.08266 -8.95592 -8.78686 -8.64647 -8.32662 -6.19366 -4.22375 1.07012 1.21355 2.64785 3.19291 3.23840 3.32634 3.34138 3.64175 3.77300 4.31669 4.32936 4.41968 4.77634 4.81040 4.85790 4.94654 5.11421 5.17561 5.21768 5.37385 5.53510 5.56375 5.68804 5.76753 5.82429 5.93266 6.00555 6.01568 6.07204 6.12685 6.15710 6.28671 6.29664 6.32947 6.36567 6.51855 6.66012 6.84429 6.96410 7.06802 7.19596 7.24089 7.29800 7.34553 7.75847 8.13324 8.40647 8.74328 9.41895 10.89529 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013808 B = 0.004481 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.262912 B = 6247.281002 C = 7076.069680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.362 6.362 3 C 0.177 3.823 4 C -0.184 4.184 5 C 0.435 3.565 6 O -0.506 6.506 7 O -0.313 6.313 8 C 0.078 3.922 9 C 0.034 3.966 10 C -0.485 4.485 11 H 0.066 0.934 12 C 0.071 3.929 13 N -0.886 5.886 14 Si 0.893 3.107 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.284 1.284 18 C 0.026 3.974 19 O -0.387 6.387 20 C 0.049 3.951 21 C -0.111 4.111 22 C -0.058 4.058 23 C -0.140 4.140 24 C -0.086 4.086 25 C -0.164 4.164 26 C 0.139 3.861 27 F -0.128 7.128 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.041 0.959 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.037 0.963 36 H 0.264 0.736 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.047 0.953 41 H 0.144 0.856 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.576 1.003 -13.169 15.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 O -0.280 6.280 3 C 0.135 3.865 4 C -0.241 4.241 5 C 0.277 3.723 6 O -0.395 6.395 7 O -0.228 6.228 8 C 0.005 3.995 9 C 0.033 3.967 10 C -0.523 4.523 11 H 0.084 0.916 12 C -0.132 4.132 13 N -0.523 5.523 14 Si 0.720 3.280 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.210 1.210 18 C -0.051 4.051 19 O -0.306 6.306 20 C -0.028 4.028 21 C -0.112 4.112 22 C -0.076 4.076 23 C -0.158 4.158 24 C -0.104 4.104 25 C -0.182 4.182 26 C 0.120 3.880 27 F -0.106 7.106 28 H 0.105 0.895 29 H 0.122 0.878 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.117 0.883 40 H 0.065 0.935 41 H 0.162 0.838 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.726 1.072 -12.715 15.459 hybrid contribution -0.062 -0.491 0.140 0.515 sum 8.664 0.581 -12.575 15.282 Atomic orbital electron populations 1.23467 0.78814 1.04009 1.02973 1.87892 1.22015 1.23548 1.94562 1.19815 0.90774 0.85026 0.90884 1.22553 1.02956 1.01387 0.97240 1.24224 0.81795 0.79463 0.86845 1.90620 1.48180 1.37575 1.63088 1.86656 1.31955 1.66149 1.38012 1.23466 1.01892 0.92170 0.81994 1.21126 0.88009 0.96593 0.90984 1.20497 1.18690 0.88154 1.24910 0.91576 1.24912 0.94656 0.99199 0.94408 1.69891 1.25485 1.34102 1.22818 0.86510 0.78331 0.84899 0.78248 1.19438 1.20690 1.21022 1.24152 0.96878 0.97413 0.86622 1.89494 1.30146 1.91762 1.19219 1.23937 0.83005 0.96239 0.99621 1.19189 0.92491 0.93557 1.05998 1.20977 0.94671 0.96904 0.95016 1.21188 0.93574 0.98970 1.02097 1.21027 1.00085 0.91553 0.97749 1.21053 0.92425 0.99455 1.05317 1.17319 0.91070 0.79600 1.00025 1.91475 1.84297 1.41455 1.93361 0.89490 0.87820 0.94086 0.89842 0.90083 0.90027 0.90010 0.94509 0.92625 0.92920 0.90420 0.88349 0.93542 0.83835 0.85178 0.85090 0.84642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 10.07 101.05 1.02 1.05 16 2 O -0.36 -6.18 8.83 -47.80 -0.42 -6.60 16 3 C 0.18 3.00 0.84 -92.93 -0.08 2.92 16 4 C -0.18 -2.54 7.74 37.16 0.29 -2.25 16 5 C 0.44 9.01 6.68 36.00 0.24 9.25 16 6 O -0.51 -11.47 13.93 -18.75 -0.26 -11.73 16 7 O -0.31 -6.82 6.24 -44.11 -0.28 -7.10 16 8 C 0.08 1.80 4.72 37.16 0.18 1.98 16 9 C 0.03 0.78 0.69 -154.58 -0.11 0.68 16 10 C -0.49 -12.27 7.67 -34.44 -0.26 -12.53 16 11 H 0.07 1.67 7.82 -52.48 -0.41 1.26 16 12 C 0.07 1.85 5.25 -17.82 -0.09 1.75 16 13 N -0.89 -23.80 11.47 55.43 0.64 -23.16 16 14 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 15 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 18 C 0.03 0.55 8.34 37.60 0.31 0.87 16 19 O -0.39 -9.05 12.40 -35.23 -0.44 -9.48 16 20 C 0.05 1.14 7.92 37.61 0.30 1.44 16 21 C -0.11 -1.77 4.56 -104.56 -0.48 -2.25 16 22 C -0.06 -0.81 9.37 -39.60 -0.37 -1.18 16 23 C -0.14 -1.58 10.04 -39.58 -0.40 -1.97 16 24 C -0.09 -0.90 10.04 -39.59 -0.40 -1.30 16 25 C -0.16 -2.01 10.03 -39.51 -0.40 -2.40 16 26 C 0.14 2.13 6.16 -39.42 -0.24 1.89 16 27 F -0.13 -2.10 13.27 2.25 0.03 -2.07 16 28 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.10 1.98 4.89 -51.93 -0.25 1.73 16 30 H 0.04 0.54 6.48 -51.93 -0.34 0.20 16 31 H 0.08 1.16 5.95 -51.93 -0.31 0.85 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.08 1.06 6.53 -51.93 -0.34 0.72 16 34 H 0.08 2.11 7.39 -51.93 -0.38 1.73 16 35 H 0.04 0.79 7.85 -51.93 -0.41 0.39 16 36 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.05 0.99 7.90 -51.93 -0.41 0.58 16 38 H 0.08 1.54 8.09 -51.93 -0.42 1.12 16 39 H 0.10 2.47 7.45 -51.93 -0.39 2.08 16 40 H 0.05 0.99 8.10 -51.93 -0.42 0.57 16 41 H 0.14 1.97 7.02 -52.48 -0.37 1.60 16 42 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 43 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 361.37 15.07 5.45 5.45 Total: -1.00 -29.80 361.37 -6.49 -36.30 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.69 Total: 5.08 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -0.49 Total: -2.07 kcal Atomic # 7 Polarization: -23.80 SS G_CDS: 0.64 Total: -23.16 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -1.40 Total: -34.92 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.03 Total: -2.07 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.80 -6.49 -36.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650485835.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.909 kcal (2) G-P(sol) polarization free energy of solvation -29.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds