Wall clock time and date at job start Tue Mar 31 2020 20:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99773 * 2 1 4 4 C 1.52996 * 109.47259 * 306.78325 * 3 2 1 5 5 C 1.50696 * 109.46739 * 66.78100 * 3 2 1 6 6 O 1.20827 * 119.99641 * 141.45434 * 5 3 2 7 7 O 1.34228 * 120.00637 * 321.45413 * 5 3 2 8 8 C 1.45198 * 117.00151 * 179.97438 * 7 5 3 9 9 C 1.53002 * 109.46820 * 180.02562 * 8 7 5 10 10 C 1.50700 * 112.99916 * 44.27911 * 9 8 7 11 11 H 1.08006 * 119.99802 * 245.03056 * 10 9 8 12 12 C 1.37877 * 120.00580 * 65.03265 * 10 9 8 13 13 N 1.31513 * 119.99583 * 5.14526 * 12 10 9 14 14 Si 1.86797 * 120.00374 * 185.15493 * 12 10 9 15 15 H 1.48495 * 109.46958 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47281 * 119.99467 * 14 12 10 17 17 H 1.48500 * 109.46768 * 239.99800 * 14 12 10 18 18 C 1.54029 * 113.82035 * 272.28901 * 9 8 7 19 19 O 1.44172 * 85.51953 * 223.19770 * 18 9 8 20 20 C 1.44176 * 93.34157 * 24.19369 * 19 18 9 21 21 C 1.50702 * 109.46681 * 186.78049 * 3 2 1 22 22 C 1.38210 * 120.01541 * 355.48138 * 21 3 2 23 23 C 1.38227 * 120.02536 * 179.97438 * 22 21 3 24 24 C 1.38264 * 120.05146 * 0.02562 * 23 22 21 25 25 C 1.38180 * 120.02630 * 0.02562 * 24 23 22 26 26 C 1.38440 * 120.00579 * 175.20538 * 21 3 2 27 27 F 1.35100 * 120.03045 * 359.97438 * 26 21 3 28 28 H 1.09000 * 109.47304 * 182.52601 * 1 2 3 29 29 H 1.08995 * 109.47219 * 302.52138 * 1 2 3 30 30 H 1.08999 * 109.47718 * 62.52333 * 1 2 3 31 31 H 1.08994 * 109.47284 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.46950 * 300.00123 * 4 3 2 33 33 H 1.09001 * 109.47167 * 59.99577 * 4 3 2 34 34 H 1.09001 * 109.47384 * 299.99653 * 8 7 5 35 35 H 1.08998 * 109.47250 * 60.00411 * 8 7 5 36 36 H 0.97001 * 120.00339 * 179.97438 * 13 12 10 37 37 H 1.09003 * 113.86396 * 337.34638 * 18 9 8 38 38 H 1.09005 * 113.86811 * 109.04689 * 18 9 8 39 39 H 1.09007 * 113.86184 * 221.66107 * 20 19 18 40 40 H 1.08993 * 113.98507 * 89.96721 * 20 19 18 41 41 H 1.08006 * 119.99027 * 359.95140 * 22 21 3 42 42 H 1.07999 * 119.97130 * 179.97438 * 23 22 21 43 43 H 1.07995 * 119.98873 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.01501 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4286 2.1227 -1.1553 5 6 1.7027 1.9922 1.3057 6 8 2.5390 2.6849 1.8355 7 8 0.4999 1.8343 1.8802 8 6 0.2741 2.5248 3.1374 9 6 -1.1415 2.2268 3.6357 10 6 -1.5148 0.7720 3.5130 11 1 -2.3082 0.4727 2.8440 12 6 -0.8437 -0.1771 4.2545 13 7 0.0519 0.1952 5.1428 14 14 -1.2062 -1.9914 3.9975 15 1 -2.2466 -2.1445 2.9490 16 1 0.0337 -2.6884 3.5706 17 1 -1.6944 -2.5835 5.2688 18 6 -2.2093 3.1939 3.0908 19 8 -2.7244 3.2045 4.4373 20 6 -1.4562 2.8354 5.0153 21 6 3.5034 1.1905 -0.1678 22 6 4.1019 -0.0549 -0.1980 23 6 5.4714 -0.1607 -0.3524 24 6 6.2443 0.9791 -0.4762 25 6 5.6483 2.2254 -0.4452 26 6 4.2755 2.3323 -0.2973 27 9 3.6910 3.5500 -0.2740 28 1 -0.3634 -1.0266 0.0453 29 1 -0.3633 0.5525 0.8665 30 1 -0.3634 0.4741 -0.9117 31 1 1.8715 3.1186 -1.1550 32 1 1.6509 1.6260 -2.0997 33 1 0.3485 2.2058 -1.0339 34 1 0.9986 2.1815 3.8758 35 1 0.3885 3.5984 2.9878 36 1 0.5239 -0.4724 5.6648 37 1 -1.8093 4.1538 2.7640 38 1 -2.8842 2.7417 2.3640 39 1 -1.5337 2.0988 5.8151 40 1 -0.8248 3.6844 5.2772 41 1 3.4993 -0.9459 -0.1007 42 1 5.9382 -1.1343 -0.3756 43 1 7.3142 0.8953 -0.5964 44 1 6.2522 3.1155 -0.5414 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650485835.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:10 Heat of formation + Delta-G solvation = -159.942111 kcal Electronic energy + Delta-G solvation = -31469.435804 eV Core-core repulsion = 27075.263263 eV Total energy + Delta-G solvation = -4394.172541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.96077 -42.02387 -41.06262 -39.96513 -38.82249 -37.47730 -34.84764 -33.84143 -31.91378 -31.62505 -30.43325 -28.06311 -27.53753 -27.16592 -26.40306 -25.03305 -23.65722 -23.44752 -21.37896 -20.82899 -19.13168 -18.83782 -18.38933 -17.77226 -17.57929 -17.39022 -16.97549 -16.79675 -16.59907 -16.38559 -16.26011 -16.09594 -15.97231 -15.67660 -15.12296 -14.80790 -14.60044 -14.30252 -14.17797 -13.94994 -13.61840 -13.60378 -13.41066 -13.28664 -13.03054 -12.88571 -12.67201 -12.60238 -12.34377 -12.04569 -11.90880 -11.82140 -11.76527 -11.41920 -11.27955 -10.91138 -10.71534 -10.68915 -10.21321 -9.99323 -9.65609 -8.17173 -6.24173 0.06371 0.23906 1.07988 1.40074 1.43958 1.52611 1.73521 2.41296 2.51952 2.63201 3.01367 3.21222 3.23731 3.33319 3.53271 3.72125 3.86645 4.01341 4.09395 4.25558 4.34497 4.40194 4.43118 4.44964 4.47915 4.49605 4.55864 4.57883 4.72394 4.73296 4.84883 4.96129 5.09133 5.10559 5.15453 5.16988 5.30430 5.33912 5.43059 5.45556 5.48582 5.63068 5.74110 5.89564 5.94204 6.22365 6.71230 6.78349 7.41960 8.90719 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013808 B = 0.004481 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.262912 B = 6247.281002 C = 7076.069680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.368 6.368 3 C 0.179 3.821 4 C -0.178 4.178 5 C 0.427 3.573 6 O -0.532 6.532 7 O -0.315 6.315 8 C 0.088 3.912 9 C 0.020 3.980 10 C -0.487 4.487 11 H 0.064 0.936 12 C 0.029 3.971 13 N -0.912 5.912 14 Si 0.941 3.059 15 H -0.256 1.256 16 H -0.285 1.285 17 H -0.286 1.286 18 C 0.037 3.963 19 O -0.401 6.401 20 C 0.052 3.948 21 C -0.139 4.139 22 C -0.075 4.075 23 C -0.133 4.133 24 C -0.074 4.074 25 C -0.165 4.165 26 C 0.110 3.890 27 F -0.143 7.143 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.260 0.740 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.139 0.861 42 H 0.163 0.837 43 H 0.173 0.827 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.631 0.411 -15.293 18.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 O -0.287 6.287 3 C 0.137 3.863 4 C -0.235 4.235 5 C 0.270 3.730 6 O -0.423 6.423 7 O -0.230 6.230 8 C 0.014 3.986 9 C 0.019 3.981 10 C -0.525 4.525 11 H 0.082 0.918 12 C -0.171 4.171 13 N -0.551 5.551 14 Si 0.768 3.232 15 H -0.180 1.180 16 H -0.211 1.211 17 H -0.212 1.212 18 C -0.040 4.040 19 O -0.320 6.320 20 C -0.025 4.025 21 C -0.140 4.140 22 C -0.093 4.093 23 C -0.150 4.150 24 C -0.092 4.092 25 C -0.183 4.183 26 C 0.091 3.909 27 F -0.121 7.121 28 H 0.115 0.885 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.123 0.877 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.157 0.843 42 H 0.180 0.820 43 H 0.190 0.810 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 9.761 0.479 -14.859 17.785 hybrid contribution -0.312 -0.309 0.780 0.895 sum 9.450 0.170 -14.079 16.957 Atomic orbital electron populations 1.23502 0.78450 1.04500 1.03076 1.87890 1.22519 1.23842 1.94419 1.19975 0.92099 0.84855 0.89390 1.22548 1.03011 1.00954 0.96961 1.25256 0.80902 0.79088 0.87799 1.90588 1.48726 1.38893 1.64053 1.86734 1.32911 1.66090 1.37241 1.23175 1.00645 0.92670 0.82070 1.21199 0.88886 0.96454 0.91566 1.20708 1.18207 0.89337 1.24235 0.91752 1.25529 0.94728 1.02440 0.94393 1.70005 1.26543 1.34766 1.23751 0.85736 0.78202 0.81030 0.78269 1.17983 1.21098 1.21248 1.24253 0.95815 0.98021 0.85867 1.89468 1.30278 1.91824 1.20459 1.23835 0.83337 0.96364 0.98978 1.19311 0.91911 0.94686 1.08075 1.21122 0.96165 0.96033 0.95992 1.21599 0.92415 1.00911 1.00113 1.21526 1.02030 0.90317 0.95334 1.21441 0.91320 1.01333 1.04216 1.17692 0.92386 0.78976 1.01858 1.91427 1.84750 1.42225 1.93726 0.88526 0.90819 0.91044 0.90183 0.87712 0.89450 0.93601 0.93442 0.93065 0.90282 0.89213 0.90814 0.91830 0.84304 0.81980 0.80950 0.82502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 10.07 113.37 1.14 1.12 16 2 O -0.37 -12.42 8.83 -136.97 -1.21 -13.62 16 3 C 0.18 6.02 0.84 -12.29 -0.01 6.01 16 4 C -0.18 -4.73 7.74 71.98 0.56 -4.17 16 5 C 0.43 17.99 6.68 71.23 0.48 18.46 16 6 O -0.53 -24.87 13.93 21.96 0.31 -24.57 16 7 O -0.31 -13.97 6.24 -46.75 -0.29 -14.27 16 8 C 0.09 4.15 4.72 71.98 0.34 4.49 16 9 C 0.02 0.92 0.69 -52.23 -0.04 0.88 16 10 C -0.49 -24.81 7.67 25.60 0.20 -24.61 16 11 H 0.06 3.23 7.82 -2.91 -0.02 3.21 16 12 C 0.03 1.53 5.25 84.65 0.44 1.97 16 13 N -0.91 -50.43 11.47 21.45 0.25 -50.18 16 14 Si 0.94 42.10 29.54 68.60 2.03 44.13 16 15 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 16 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 17 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 18 C 0.04 1.50 8.34 72.27 0.60 2.10 16 19 O -0.40 -18.49 12.40 -148.98 -1.85 -20.33 16 20 C 0.05 2.44 7.92 72.27 0.57 3.02 16 21 C -0.14 -4.36 4.56 -19.82 -0.09 -4.45 16 22 C -0.08 -2.02 9.37 22.26 0.21 -1.81 16 23 C -0.13 -2.59 10.04 22.27 0.22 -2.37 16 24 C -0.07 -1.30 10.04 22.26 0.22 -1.07 16 25 C -0.16 -3.68 10.03 22.32 0.22 -3.46 16 26 C 0.11 3.31 6.16 22.38 0.14 3.45 16 27 F -0.14 -4.74 13.27 44.97 0.60 -4.15 16 28 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.07 2.80 4.89 -2.39 -0.01 2.79 16 30 H 0.07 1.74 6.48 -2.39 -0.02 1.73 16 31 H 0.08 2.19 5.95 -2.39 -0.01 2.18 16 32 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.09 2.16 6.53 -2.39 -0.02 2.15 16 34 H 0.05 2.47 7.39 -2.39 -0.02 2.45 16 35 H 0.05 2.07 7.85 -2.39 -0.02 2.05 16 36 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 37 H 0.08 2.81 7.90 -2.39 -0.02 2.79 16 38 H 0.09 3.42 8.09 -2.38 -0.02 3.40 16 39 H 0.07 3.82 7.45 -2.38 -0.02 3.80 16 40 H 0.06 2.74 8.10 -2.39 -0.02 2.72 16 41 H 0.14 3.74 7.02 -2.91 -0.02 3.72 16 42 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 43 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 44 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -66.31 361.37 6.07 -60.25 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 1.03 Total: 23.17 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 5.21 Total: -0.43 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.25 Total: -50.18 kcal Atomic # 8 Polarization: -69.75 SS G_CDS: -3.04 Total: -72.79 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.60 Total: -4.15 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -66.31 6.07 -60.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650485835.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.696 kcal (2) G-P(sol) polarization free energy of solvation -66.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds