Wall clock time and date at job start Tue Mar 31 2020 20:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36061 * 116.99837 * 2 1 4 4 C 1.38557 * 120.00762 * 359.71883 * 3 2 1 5 5 C 1.38183 * 120.07159 * 179.71849 * 4 3 2 6 6 C 1.38846 * 120.07371 * 0.56445 * 5 4 3 7 7 N 1.40094 * 119.99680 * 179.74228 * 6 5 4 8 8 C 1.34784 * 120.00023 * 34.18014 * 7 6 5 9 9 O 1.21288 * 120.00016 * 4.96939 * 8 7 6 10 10 C 1.50698 * 119.99968 * 184.96409 * 8 7 6 11 11 N 1.46497 * 109.47113 * 180.02562 * 10 8 7 12 12 C 1.36934 * 120.00105 * 269.99913 * 11 10 8 13 13 H 1.08001 * 119.99771 * 21.21253 * 12 11 10 14 14 C 1.38811 * 120.00221 * 201.20931 * 12 11 10 15 15 N 1.31614 * 120.00182 * 9.55666 * 14 12 11 16 16 Si 1.86801 * 120.00017 * 189.55339 * 14 12 11 17 17 H 1.48495 * 109.46970 * 90.00178 * 16 14 12 18 18 H 1.48501 * 109.47139 * 210.00569 * 16 14 12 19 19 H 1.48503 * 109.47263 * 330.00172 * 16 14 12 20 20 C 1.46494 * 119.99913 * 90.00149 * 11 10 8 21 21 C 1.50703 * 109.47270 * 84.10047 * 20 11 10 22 22 O 1.20824 * 119.99836 * 359.97438 * 21 20 11 23 23 O 1.34233 * 119.99839 * 179.97438 * 21 20 11 24 24 C 1.38810 * 120.00394 * 359.71497 * 6 5 4 25 25 C 1.38496 * 119.93677 * 0.02562 * 24 6 5 26 26 O 1.35990 * 120.04273 * 179.97438 * 25 24 6 27 27 C 1.42901 * 116.99752 * 0.02562 * 26 25 24 28 28 H 1.08999 * 109.46888 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47228 * 300.00141 * 1 2 3 30 30 H 1.09003 * 109.46686 * 60.00252 * 1 2 3 31 31 H 1.08005 * 119.95909 * 359.97438 * 4 3 2 32 32 H 1.07997 * 119.96084 * 180.25898 * 5 4 3 33 33 H 0.96996 * 119.99946 * 214.17465 * 7 6 5 34 34 H 1.09004 * 109.47310 * 300.00585 * 10 8 7 35 35 H 1.09001 * 109.46772 * 60.00072 * 10 8 7 36 36 H 0.96991 * 120.00492 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.47184 * 204.09983 * 20 11 10 38 38 H 1.09005 * 109.47478 * 324.09865 * 20 11 10 39 39 H 0.96708 * 116.99333 * 179.97438 * 23 21 20 40 40 H 1.08010 * 120.03303 * 180.02562 * 24 6 5 41 41 H 1.09010 * 109.47069 * 60.00074 * 27 26 25 42 42 H 1.09000 * 109.46996 * 179.97438 * 27 26 25 43 43 H 1.09003 * 109.47201 * 299.99932 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2123 0.0000 4 6 1.2922 2.3744 -0.0059 5 6 1.9181 3.6064 0.0000 6 6 3.3045 3.6825 0.0000 7 7 3.9373 4.9323 0.0004 8 6 3.3803 5.9695 0.6567 9 8 2.3797 5.8000 1.3209 10 6 4.0008 7.3398 0.5652 11 7 3.2147 8.2859 1.3609 12 6 2.1768 8.9684 0.7847 13 1 1.7142 8.5891 -0.1144 14 6 1.7192 10.1477 1.3563 15 7 2.3951 10.7098 2.3359 16 14 0.1442 10.9370 0.7352 17 1 -1.0110 10.4077 1.5035 18 1 0.2246 12.4091 0.9134 19 1 -0.0329 10.6217 -0.7051 20 6 3.5392 8.5018 2.7731 21 6 4.6448 9.5198 2.8845 22 8 5.1140 10.0138 1.8867 23 8 5.1084 9.8776 4.0924 24 6 4.0634 2.5202 0.0000 25 6 3.4364 1.2853 -0.0005 26 8 4.1779 0.1453 -0.0009 27 6 5.5989 0.2957 -0.0004 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.2137 2.3173 -0.0109 32 1 1.3282 4.5110 -0.0004 33 1 4.7764 5.0512 -0.4714 34 1 5.0207 7.3031 0.9479 35 1 4.0147 7.6635 -0.4756 36 1 2.0756 11.5340 2.7350 37 1 2.6556 8.8662 3.2972 38 1 3.8643 7.5619 3.2191 39 1 5.8184 10.5338 4.1133 40 1 5.1419 2.5789 0.0004 41 1 5.9059 0.8444 0.8902 42 1 6.0684 -0.6880 -0.0004 43 1 5.9065 0.8455 -0.8899 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832394271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:05 Heat of formation + Delta-G solvation = -129.401916 kcal Electronic energy + Delta-G solvation = -29377.657664 eV Core-core repulsion = 25004.729406 eV Total energy + Delta-G solvation = -4372.928257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.73969 -39.45477 -38.67769 -38.48000 -36.84563 -35.46558 -34.36681 -33.89556 -31.50346 -30.35054 -29.68109 -28.15753 -27.35849 -27.04626 -26.14117 -23.18791 -22.38135 -21.85508 -20.42805 -19.78451 -18.63229 -17.66220 -17.21937 -16.90802 -16.68056 -16.20582 -16.04539 -15.87038 -15.32616 -15.15576 -15.01347 -14.89704 -14.56029 -14.41785 -14.12434 -13.53814 -13.41662 -13.14151 -13.06980 -12.72683 -12.65167 -12.25957 -11.81779 -11.58028 -11.50058 -11.34931 -11.28515 -11.11118 -11.05804 -10.91559 -10.64394 -10.20041 -10.15566 -10.01981 -9.69154 -9.47760 -9.15157 -8.64273 -8.58140 -7.44208 -7.12168 -5.96500 -3.38423 1.24513 1.45732 3.12841 3.12992 3.22209 3.33445 3.38376 3.41046 3.43436 3.81600 3.85860 4.30595 4.52345 4.72316 4.88487 4.94378 5.00573 5.07735 5.13388 5.24549 5.25221 5.26122 5.32782 5.33214 5.40000 5.44137 5.55973 5.86018 5.97015 6.15770 6.35189 6.38045 6.40302 6.49424 6.90962 6.94768 6.97974 7.09912 7.53782 7.60456 7.72325 7.82017 8.12177 8.67656 8.95367 9.39323 9.60373 10.01210 11.14308 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.014600 B = 0.002884 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.392357 B = 9704.823314 C =11061.443001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.072 3.928 4 C -0.150 4.150 5 C -0.117 4.117 6 C 0.166 3.834 7 N -0.686 5.686 8 C 0.477 3.523 9 O -0.498 6.498 10 C 0.134 3.866 11 N -0.544 5.544 12 C -0.249 4.249 13 H 0.077 0.923 14 C 0.005 3.995 15 N -0.913 5.913 16 Si 0.922 3.078 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.279 1.279 20 C 0.193 3.807 21 C 0.483 3.517 22 O -0.523 6.523 23 O -0.541 6.541 24 C -0.207 4.207 25 C 0.115 3.885 26 O -0.307 6.307 27 C 0.027 3.973 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.406 0.594 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.259 0.741 37 H 0.123 0.877 38 H 0.047 0.953 39 H 0.381 0.619 40 H 0.136 0.864 41 H 0.054 0.946 42 H 0.098 0.902 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.424 -18.045 -4.032 19.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.027 3.973 4 C -0.169 4.169 5 C -0.137 4.137 6 C 0.070 3.930 7 N -0.334 5.334 8 C 0.263 3.737 9 O -0.370 6.370 10 C 0.002 3.998 11 N -0.261 5.261 12 C -0.378 4.378 13 H 0.095 0.905 14 C -0.192 4.192 15 N -0.559 5.559 16 Si 0.751 3.249 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.204 1.204 20 C 0.064 3.936 21 C 0.324 3.676 22 O -0.409 6.409 23 O -0.352 6.352 24 C -0.228 4.228 25 C 0.069 3.931 26 O -0.221 6.221 27 C -0.069 4.069 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.160 0.840 33 H 0.241 0.759 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.141 0.859 38 H 0.065 0.935 39 H 0.237 0.763 40 H 0.154 0.846 41 H 0.073 0.927 42 H 0.116 0.884 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.439 -18.405 -3.744 19.094 hybrid contribution 0.121 1.463 -0.498 1.550 sum 3.560 -16.942 -4.243 17.825 Atomic orbital electron populations 1.23024 0.78910 1.03591 1.01294 1.86136 1.20706 1.25996 1.89627 1.18149 0.88989 0.85138 1.05045 1.20954 0.99926 0.90943 1.05077 1.20965 0.93206 0.98159 1.01399 1.17476 0.91645 0.84913 0.98935 1.44087 1.26734 1.08238 1.54338 1.23522 0.85328 0.87340 0.77530 1.90666 1.24430 1.83885 1.37976 1.20688 0.94297 0.86026 0.98781 1.43326 1.33682 1.43374 1.05705 1.19227 1.06785 1.01899 1.09883 0.90474 1.24931 0.99481 0.96078 0.98738 1.69651 1.38392 1.20151 1.27681 0.85985 0.82358 0.78095 0.78425 1.21216 1.21678 1.20416 1.20186 0.95404 0.91667 0.86299 1.25103 0.80770 0.82462 0.79294 1.90492 1.57971 1.54139 1.38346 1.84629 1.54005 1.59449 1.37081 1.20723 1.00017 0.90190 1.11880 1.17860 0.88048 0.85419 1.01763 1.86161 1.18516 1.28191 1.89201 1.23045 0.78914 1.03629 1.01285 0.88518 0.92738 0.92833 0.84628 0.84022 0.75908 0.90914 0.89298 0.93020 0.85923 0.93507 0.76349 0.84626 0.92706 0.88409 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.07 10.28 -34.54 -0.36 -4.42 16 3 C 0.07 1.01 6.70 -39.12 -0.26 0.75 16 4 C -0.15 -2.03 9.03 -39.48 -0.36 -2.38 16 5 C -0.12 -1.80 8.65 -39.38 -0.34 -2.14 16 6 C 0.17 2.39 6.27 -83.64 -0.52 1.87 16 7 N -0.69 -9.47 5.34 -9.84 -0.05 -9.52 16 8 C 0.48 8.57 7.64 -10.98 -0.08 8.48 16 9 O -0.50 -10.91 14.16 5.55 0.08 -10.83 16 10 C 0.13 2.54 6.12 -5.20 -0.03 2.51 16 11 N -0.54 -13.06 1.52 -175.99 -0.27 -13.32 16 12 C -0.25 -6.62 9.69 -15.06 -0.15 -6.76 16 13 H 0.08 2.01 7.85 -52.49 -0.41 1.60 16 14 C 0.01 0.14 5.13 -17.43 -0.09 0.05 16 15 N -0.91 -25.49 8.79 55.49 0.49 -25.00 16 16 Si 0.92 21.73 29.56 -169.99 -5.03 16.71 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 C 0.19 4.56 5.48 -5.20 -0.03 4.54 16 21 C 0.48 11.39 6.44 36.01 0.23 11.63 16 22 O -0.52 -13.77 16.88 -18.75 -0.32 -14.08 16 23 O -0.54 -10.86 13.42 -39.27 -0.53 -11.38 16 24 C -0.21 -2.58 8.95 -39.27 -0.35 -2.93 16 25 C 0.12 1.56 6.70 -39.14 -0.26 1.30 16 26 O -0.31 -3.87 10.28 -34.31 -0.35 -4.22 16 27 C 0.03 0.21 9.81 101.05 0.99 1.20 16 28 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 30 H 0.05 0.41 7.65 -51.93 -0.40 0.02 16 31 H 0.14 1.53 6.29 -52.48 -0.33 1.20 16 32 H 0.14 2.47 6.46 -52.49 -0.34 2.13 16 33 H 0.41 4.10 8.82 -40.82 -0.36 3.74 16 34 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 35 H 0.09 1.60 8.04 -51.93 -0.42 1.18 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.12 3.20 6.32 -51.93 -0.33 2.87 16 38 H 0.05 1.00 8.12 -51.93 -0.42 0.57 16 39 H 0.38 5.98 9.10 45.56 0.41 6.39 16 40 H 0.14 1.31 6.30 -52.48 -0.33 0.98 16 41 H 0.05 0.40 7.66 -51.92 -0.40 0.00 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 LS Contribution 368.59 15.07 5.55 5.55 Total: -1.00 -35.89 368.59 -5.55 -41.44 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -4.51 Total: 9.76 kcal Atomic # 6 Polarization: 19.59 SS G_CDS: -0.26 Total: 19.33 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.17 Total: -47.85 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -1.47 Total: -44.94 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.89 -5.55 -41.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832394271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.961 kcal (2) G-P(sol) polarization free energy of solvation -35.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds