Wall clock time and date at job start Tue Mar 31 2020 20:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.39928 * 125.74630 * 2 1 4 4 C 1.30407 * 108.95675 * 180.02562 * 3 2 1 5 5 C 1.41343 * 108.04996 * 0.02562 * 4 3 2 6 6 C 1.47305 * 126.43205 * 179.97438 * 5 4 3 7 7 O 1.21623 * 119.99492 * 228.58332 * 6 5 4 8 8 N 1.34771 * 120.00029 * 48.59146 * 6 5 4 9 9 C 1.45224 * 119.34334 * 355.74930 * 8 6 5 10 10 C 1.50608 * 112.83941 * 135.99844 * 9 8 6 11 11 C 1.48861 * 117.90187 * 27.68793 * 10 9 8 12 12 H 1.09001 * 106.76385 * 217.68790 * 11 10 9 13 13 C 1.55065 * 111.54426 * 101.51474 * 11 10 9 14 14 C 1.55059 * 101.27209 * 194.53341 * 13 11 10 15 15 N 1.47546 * 104.85133 * 35.96720 * 14 13 11 16 16 C 1.36942 * 125.85772 * 156.09300 * 15 14 13 17 17 H 1.08004 * 120.00270 * 180.02562 * 16 15 14 18 18 C 1.38810 * 119.99763 * 0.02602 * 16 15 14 19 19 N 1.31615 * 120.00079 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00001 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46745 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47084 * 119.99924 * 20 18 16 23 23 H 1.48501 * 109.47149 * 240.00045 * 20 18 16 24 24 C 1.47628 * 108.28879 * 336.11529 * 15 14 13 25 25 H 1.09004 * 108.10160 * 244.73061 * 24 15 14 26 26 C 1.44681 * 119.91409 * 176.14694 * 8 6 5 27 27 C 1.34346 * 125.75011 * 180.31479 * 2 1 3 28 28 Cl 1.73604 * 126.32242 * 359.95950 * 27 2 1 29 29 H 1.09003 * 109.46756 * 89.97715 * 1 2 3 30 30 H 1.09004 * 109.47036 * 209.97406 * 1 2 3 31 31 H 1.09000 * 109.47390 * 329.97646 * 1 2 3 32 32 H 1.08008 * 125.97645 * 179.97438 * 4 3 2 33 33 H 1.09000 * 108.80700 * 15.13772 * 9 8 6 34 34 H 1.09000 * 108.81163 * 256.86752 * 9 8 6 35 35 H 1.08997 * 107.75717 * 265.55652 * 10 9 8 36 36 H 1.08996 * 107.72507 * 149.79650 * 10 9 8 37 37 H 1.08999 * 111.07127 * 76.52152 * 13 11 10 38 38 H 1.09007 * 111.06861 * 312.54268 * 13 11 10 39 39 H 1.09000 * 110.36433 * 154.81070 * 14 13 11 40 40 H 1.08999 * 110.35937 * 277.01397 * 14 13 11 41 41 H 0.97000 * 120.00068 * 180.02562 * 19 18 16 42 42 H 1.08996 * 109.26818 * 107.99609 * 26 8 6 43 43 H 1.08999 * 108.17571 * 349.65622 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2825 1.1357 0.0000 4 6 3.5310 0.7590 -0.0006 5 6 3.5621 -0.6541 -0.0015 6 6 4.7662 -1.5026 -0.0029 7 8 4.8613 -2.4219 -0.7935 8 7 5.7623 -1.2603 0.8719 9 6 5.6759 -0.1041 1.7464 10 6 6.0691 -0.4146 3.1667 11 6 7.0347 -1.5243 3.3954 12 1 6.7142 -2.0380 4.3018 13 6 8.4637 -0.9883 3.6693 14 6 9.3098 -2.2753 3.4896 15 7 8.6479 -3.0134 2.3968 16 6 9.2406 -3.9391 1.5800 17 1 8.6642 -4.4242 0.8061 18 6 10.5822 -4.2539 1.7467 19 7 11.2847 -3.6624 2.6895 20 14 11.3906 -5.5172 0.6330 21 1 10.3918 -6.0323 -0.3378 22 1 12.5142 -4.8824 -0.1016 23 1 11.9081 -6.6415 1.4537 24 6 7.2373 -2.5824 2.3345 25 1 6.6103 -3.4389 2.5823 26 6 6.9063 -2.1444 0.9257 27 6 2.2500 -1.0903 -0.0060 28 17 1.7156 -2.7420 -0.0141 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3634 0.8898 0.5142 32 1 4.3909 1.4125 -0.0011 33 1 4.6509 0.2665 1.7386 34 1 6.3326 0.6767 1.3626 35 1 5.1593 -0.6463 3.7204 36 1 6.4951 0.4909 3.5986 37 1 8.5493 -0.6018 4.6849 38 1 8.7444 -0.2296 2.9387 39 1 10.3324 -2.0211 3.2107 40 1 9.3028 -2.8648 4.4063 41 1 12.2223 -3.8822 2.8058 42 1 7.7725 -1.6381 0.5000 43 1 6.6834 -3.0259 0.3246 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042118317.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:51 Heat of formation + Delta-G solvation = 84.123643 kcal Electronic energy + Delta-G solvation = -27797.910017 eV Core-core repulsion = 23907.242839 eV Total energy + Delta-G solvation = -3890.667179 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.78909 -39.90907 -38.03724 -37.20176 -35.42048 -33.84623 -33.09595 -31.57491 -30.62328 -29.24916 -28.57847 -27.37946 -25.03714 -24.33092 -22.56089 -22.27214 -21.49371 -20.38819 -19.84201 -18.19263 -17.16053 -16.89338 -16.72084 -16.18168 -15.70094 -15.12764 -15.03053 -14.82083 -14.60103 -14.08326 -13.92947 -13.75665 -13.36532 -13.31161 -13.09628 -12.58729 -12.38883 -12.33924 -12.12968 -11.98578 -11.64259 -11.58681 -11.37069 -11.13570 -10.91573 -10.82889 -10.68857 -10.04299 -9.97772 -9.84087 -9.76701 -9.67550 -9.61834 -9.37022 -8.88859 -8.64928 -8.20580 -6.85020 -5.63503 -3.05229 1.02739 1.10636 1.95545 2.19047 2.96598 3.40951 3.43567 3.50039 3.52742 4.03558 4.50337 4.56004 4.66917 4.73745 4.91947 4.93094 4.98507 5.07014 5.10662 5.21503 5.40198 5.51466 5.64266 5.69970 5.85539 5.91644 6.01019 6.03776 6.14066 6.15087 6.26089 6.33056 6.53704 6.65155 6.65327 6.90274 6.93253 7.05539 7.09920 7.53791 7.66780 7.71045 7.87238 8.35984 8.43871 9.23714 9.83848 10.48223 11.40610 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.017949 B = 0.003272 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.597013 B = 8555.334798 C = 9481.806340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.357 5.357 3 N -0.274 5.274 4 C 0.089 3.911 5 C -0.254 4.254 6 C 0.585 3.415 7 O -0.530 6.530 8 N -0.585 5.585 9 C 0.108 3.892 10 C -0.111 4.111 11 C -0.090 4.090 12 H 0.059 0.941 13 C -0.141 4.141 14 C 0.151 3.849 15 N -0.594 5.594 16 C -0.220 4.220 17 H 0.080 0.920 18 C -0.009 4.009 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.165 3.835 25 H 0.026 0.974 26 C 0.106 3.894 27 C 0.169 3.831 28 Cl 0.021 6.979 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.201 0.799 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.105 0.895 40 H 0.013 0.987 41 H 0.251 0.749 42 H 0.070 0.930 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.983 11.376 -1.047 23.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.140 5.140 3 N -0.095 5.095 4 C -0.098 4.098 5 C -0.270 4.270 6 C 0.371 3.629 7 O -0.406 6.406 8 N -0.317 5.317 9 C -0.016 4.016 10 C -0.150 4.150 11 C -0.109 4.109 12 H 0.078 0.922 13 C -0.180 4.180 14 C 0.026 3.974 15 N -0.318 5.318 16 C -0.349 4.349 17 H 0.098 0.902 18 C -0.205 4.205 19 N -0.570 5.570 20 Si 0.743 3.257 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.218 1.218 24 C 0.057 3.943 25 H 0.044 0.956 26 C -0.018 4.018 27 C 0.012 3.988 28 Cl 0.049 6.951 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.218 0.782 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.123 0.877 40 H 0.031 0.969 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.699 11.584 -1.468 24.641 hybrid contribution 0.805 -1.479 -0.364 1.723 sum -20.894 10.104 -1.832 23.282 Atomic orbital electron populations 1.22077 0.73051 1.05352 1.04364 1.48469 1.07367 1.02207 1.55911 1.77319 1.01878 1.05349 1.24993 1.24070 0.95446 0.93089 0.97156 1.19948 0.91967 0.94261 1.20829 1.17165 0.81422 0.83241 0.81025 1.90804 1.79624 1.31536 1.38641 1.46919 1.20865 1.27608 1.36295 1.20966 1.01810 0.88044 0.90747 1.20394 0.99247 0.99534 0.95801 1.20438 0.95899 0.95559 0.99006 0.92225 1.23210 0.95034 1.00120 0.99611 1.21945 0.98187 0.87484 0.89775 1.44771 1.03747 1.46347 1.36975 1.19138 0.92763 1.13425 1.09533 0.90232 1.24766 0.96508 1.00319 0.98895 1.69822 1.07909 1.45185 1.34112 0.86025 0.79317 0.80650 0.79744 1.20352 1.21748 1.21827 1.19965 0.88624 0.94270 0.91484 0.95630 1.21459 0.86210 0.94115 1.00012 1.21933 0.90530 0.83933 1.02423 1.98455 1.90012 1.10164 1.96449 0.89782 0.88983 0.88172 0.78246 0.90108 0.92063 0.92682 0.90913 0.92399 0.92237 0.87737 0.96938 0.93839 0.91204 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.51 11.28 59.85 0.67 1.18 16 2 N -0.36 -3.61 3.98 -64.31 -0.26 -3.86 16 3 N -0.27 -3.01 12.49 30.87 0.39 -2.63 16 4 C 0.09 0.96 9.63 -16.98 -0.16 0.80 16 5 C -0.25 -3.42 5.02 -105.02 -0.53 -3.95 16 6 C 0.59 9.77 7.36 -12.58 -0.09 9.68 16 7 O -0.53 -10.74 16.34 5.26 0.09 -10.66 16 8 N -0.59 -9.46 3.03 -179.98 -0.55 -10.00 16 9 C 0.11 1.35 5.50 -5.92 -0.03 1.31 16 10 C -0.11 -1.44 5.55 -29.96 -0.17 -1.60 16 11 C -0.09 -1.52 2.63 -92.46 -0.24 -1.77 16 12 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 13 C -0.14 -2.55 6.24 -24.55 -0.15 -2.71 16 14 C 0.15 3.58 5.91 -2.38 -0.01 3.57 16 15 N -0.59 -14.89 3.16 -164.76 -0.52 -15.41 16 16 C -0.22 -6.09 9.77 -15.06 -0.15 -6.24 16 17 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 19 N -0.92 -26.67 10.12 55.49 0.56 -26.10 16 20 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 C 0.16 3.42 3.29 -69.13 -0.23 3.19 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 26 C 0.11 2.09 5.46 -5.92 -0.03 2.06 16 27 C 0.17 2.06 7.54 -16.44 -0.12 1.94 16 28 Cl 0.02 0.24 28.50 -51.86 -1.48 -1.23 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.38 7.78 -51.93 -0.40 -0.02 16 31 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.20 1.59 7.58 -52.48 -0.40 1.19 16 33 H 0.08 0.86 4.72 -51.93 -0.25 0.61 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.65 8.13 -51.93 -0.42 0.23 16 36 H 0.07 0.81 7.65 -51.93 -0.40 0.41 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.06 8.14 -51.92 -0.42 0.63 16 39 H 0.10 2.80 5.91 -51.93 -0.31 2.49 16 40 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.07 1.48 8.07 -51.93 -0.42 1.06 16 43 H 0.09 1.88 6.85 -51.93 -0.36 1.52 16 LS Contribution 357.07 15.07 5.38 5.38 Total: -1.00 -33.34 357.07 -8.63 -41.97 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -5.87 Total: -1.87 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -1.34 Total: 7.11 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: -0.37 Total: -58.01 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -1.48 Total: -1.23 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.34 -8.63 -41.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042118317.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.091 kcal (2) G-P(sol) polarization free energy of solvation -33.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds