Wall clock time and date at job start Tue Mar 31 2020 20:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34234 * 125.74069 * 2 1 4 4 C 1.38070 * 107.43519 * 180.02562 * 3 2 1 5 5 C 1.47382 * 126.41971 * 180.02562 * 4 3 2 6 6 O 1.21615 * 120.00172 * 179.97438 * 5 4 3 7 7 N 1.34775 * 120.00080 * 359.97438 * 5 4 3 8 8 C 1.46501 * 120.00114 * 180.02562 * 7 5 4 9 9 H 1.09002 * 112.88509 * 25.33230 * 8 7 5 10 10 C 1.53948 * 113.66308 * 253.98819 * 8 7 5 11 11 C 1.54145 * 87.22730 * 220.82244 * 10 8 7 12 12 H 1.09007 * 113.71732 * 139.15096 * 11 10 8 13 13 N 1.46493 * 113.66451 * 270.16950 * 11 10 8 14 14 C 1.36937 * 119.99865 * 252.22391 * 13 11 10 15 15 H 1.07995 * 120.00481 * 0.02562 * 14 13 11 16 16 C 1.38820 * 120.00156 * 179.97438 * 14 13 11 17 17 N 1.31620 * 120.00128 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 119.99522 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47148 * 89.99744 * 18 16 14 20 20 H 1.48503 * 109.47226 * 209.99519 * 18 16 14 21 21 H 1.48499 * 109.47528 * 329.99788 * 18 16 14 22 22 C 1.52903 * 113.66665 * 156.67742 * 8 7 5 23 23 C 1.52914 * 121.13350 * 13.65450 * 22 8 7 24 24 C 1.53961 * 86.77996 * 209.37926 * 23 22 8 25 25 C 1.52904 * 121.14020 * 265.08974 * 22 8 7 26 26 C 1.41385 * 107.15674 * 359.97438 * 4 3 2 27 27 Cl 1.73606 * 126.00580 * 180.02562 * 26 4 3 28 28 N 1.30532 * 107.99211 * 0.02562 * 26 4 3 29 29 H 1.09002 * 109.46909 * 270.02849 * 1 2 3 30 30 H 1.09005 * 109.47187 * 30.02054 * 1 2 3 31 31 H 1.08997 * 109.47811 * 150.02465 * 1 2 3 32 32 H 1.07995 * 126.28293 * 359.96416 * 3 2 1 33 33 H 0.96996 * 119.99971 * 0.02562 * 7 5 4 34 34 H 1.09004 * 113.57803 * 335.39788 * 10 8 7 35 35 H 1.09009 * 113.58240 * 106.18670 * 10 8 7 36 36 H 0.97000 * 120.00523 * 72.22454 * 13 11 10 37 37 H 0.96994 * 119.99818 * 180.02562 * 17 16 14 38 38 H 1.09000 * 113.65967 * 323.84647 * 23 22 8 39 39 H 1.08995 * 113.66353 * 94.91196 * 23 22 8 40 40 H 1.08996 * 113.57826 * 270.12976 * 24 23 22 41 41 H 1.08999 * 113.57828 * 139.33777 * 24 23 22 42 42 H 1.09003 * 113.66351 * 265.08986 * 25 22 8 43 43 H 1.09006 * 113.66329 * 36.14783 * 25 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2491 1.0895 0.0000 4 6 3.5599 0.6559 -0.0006 5 6 4.7631 1.5070 -0.0003 6 8 5.8678 0.9984 -0.0004 7 7 4.6392 2.8491 0.0002 8 6 5.8352 3.6951 -0.0001 9 1 6.7053 3.1990 -0.4303 10 6 6.1156 4.3691 1.3553 11 6 6.4887 5.6374 0.5628 12 1 6.1208 6.5596 1.0126 13 7 7.9058 5.7073 0.1981 14 6 8.7327 6.5966 0.8311 15 1 8.3402 7.2462 1.5994 16 6 10.0756 6.6625 0.4859 17 7 10.8703 7.5176 1.0940 18 14 10.7546 5.5384 -0.8425 19 1 10.6381 6.2067 -2.1636 20 1 12.1828 5.2451 -0.5605 21 1 9.9829 4.2698 -0.8598 22 6 5.5934 5.0996 -0.5541 23 6 4.1760 5.6357 -0.7584 24 6 4.7549 6.4819 -1.9070 25 6 5.8736 5.4303 -2.0204 26 6 3.5316 -0.7577 -0.0003 27 17 4.9152 -1.8062 -0.0002 28 7 2.2822 -1.1359 -0.0002 29 1 -0.3633 0.0005 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8901 -0.5134 32 1 1.9158 2.1168 -0.0005 33 1 3.7582 3.2548 0.0006 34 1 5.2270 4.4879 1.9753 35 1 6.9538 3.9292 1.8960 36 1 8.2585 5.1236 -0.4917 37 1 11.8085 7.5638 0.8525 38 1 3.4652 4.8781 -1.0885 39 1 3.8075 6.2283 0.0788 40 1 5.1091 7.4628 -1.5902 41 1 4.1087 6.5274 -2.7836 42 1 6.8612 5.8589 -2.1912 43 1 5.6398 4.6151 -2.7051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078781069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:02 Heat of formation + Delta-G solvation = 104.464457 kcal Electronic energy + Delta-G solvation = -27060.207876 eV Core-core repulsion = 23170.422741 eV Total energy + Delta-G solvation = -3889.785135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.82009 -40.60296 -38.58217 -36.90118 -35.16770 -34.14973 -33.65645 -32.48508 -30.95457 -29.99959 -27.52153 -25.66935 -24.89260 -24.25584 -23.14107 -22.11245 -21.43001 -20.40144 -20.25892 -18.62168 -17.96275 -17.03968 -16.50870 -16.28066 -16.02658 -15.46350 -15.20008 -14.89282 -14.59094 -14.45625 -14.07484 -13.78117 -13.55604 -13.23185 -12.97835 -12.69165 -12.60539 -12.30127 -12.10843 -12.01090 -11.94254 -11.79362 -11.49370 -11.00955 -10.99915 -10.89656 -10.83528 -10.23907 -10.12855 -9.89626 -9.79082 -9.76641 -9.61546 -9.51117 -9.13734 -8.88962 -8.63252 -7.29668 -5.78684 -3.15043 1.03976 1.13990 1.65620 2.33654 3.30112 3.37813 3.39902 3.45443 3.48458 3.94509 4.13970 4.54684 4.57484 4.59691 4.69591 4.72573 4.83186 4.84952 4.87852 5.04371 5.06953 5.22391 5.37757 5.50567 5.57195 5.61272 5.75959 5.82682 5.87124 5.93764 6.02345 6.13743 6.20685 6.30893 6.41441 6.56709 6.61014 6.63974 6.75776 6.88636 6.96835 7.65259 7.97922 8.38119 8.40751 9.18245 9.90691 10.09277 11.39147 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014875 B = 0.003131 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.890892 B = 8940.865503 C =10150.731086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.350 5.350 3 C 0.107 3.893 4 C -0.270 4.270 5 C 0.586 3.414 6 O -0.525 6.525 7 N -0.712 5.712 8 C 0.140 3.860 9 H 0.112 0.888 10 C -0.180 4.180 11 C 0.203 3.797 12 H 0.077 0.923 13 N -0.725 5.725 14 C -0.247 4.247 15 H 0.092 0.908 16 C 0.009 3.991 17 N -0.931 5.931 18 Si 0.878 3.122 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.274 1.274 22 C -0.127 4.127 23 C -0.114 4.114 24 C -0.133 4.133 25 C -0.129 4.129 26 C 0.171 3.829 27 Cl 0.035 6.965 28 N -0.286 5.286 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.191 0.809 33 H 0.391 0.609 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.364 0.636 37 H 0.260 0.740 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.116 -12.133 -4.363 29.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.130 5.130 3 C -0.044 4.044 4 C -0.285 4.285 5 C 0.371 3.629 6 O -0.401 6.401 7 N -0.363 5.363 8 C 0.036 3.964 9 H 0.130 0.870 10 C -0.222 4.222 11 C 0.090 3.910 12 H 0.095 0.905 13 N -0.364 5.364 14 C -0.376 4.376 15 H 0.110 0.890 16 C -0.187 4.187 17 N -0.578 5.578 18 Si 0.708 3.292 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.200 1.200 22 C -0.130 4.130 23 C -0.151 4.151 24 C -0.170 4.170 25 C -0.166 4.166 26 C -0.021 4.021 27 Cl 0.063 6.937 28 N -0.111 5.111 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.208 0.792 33 H 0.226 0.774 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.197 0.803 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -25.973 -13.395 -4.218 29.526 hybrid contribution 0.681 -0.111 -0.885 1.122 sum -25.292 -13.506 -5.103 29.123 Atomic orbital electron populations 1.22105 0.72589 1.05402 1.04355 1.48183 1.07182 1.03136 1.54523 1.23122 0.89721 0.94063 0.97497 1.20303 0.93603 0.92540 1.22090 1.17134 0.87352 0.81864 0.76516 1.90844 1.26251 1.73595 1.49361 1.45835 1.09842 1.05183 1.75409 1.22404 0.87733 0.88154 0.98074 0.87040 1.24296 1.01294 1.00214 0.96431 1.20609 0.84231 0.95189 0.90943 0.90517 1.42456 1.03829 1.44909 1.45205 1.19061 0.89936 1.12509 1.16137 0.88997 1.24648 0.96081 0.98697 0.99274 1.69692 1.05166 1.38481 1.44464 0.86636 0.78720 0.81249 0.82567 1.20970 1.21609 1.19964 1.23643 0.97362 0.95357 0.96604 1.22508 0.94716 0.98841 0.99078 1.22742 0.97901 0.98560 0.97809 1.22662 1.00047 0.98377 0.95554 1.22715 0.89494 0.90378 0.99552 1.98443 1.34330 1.64529 1.96401 1.77256 1.00159 1.07425 1.26249 0.89754 0.88520 0.88534 0.79192 0.77409 0.90853 0.90682 0.80253 0.92971 0.90779 0.91135 0.89785 0.92173 0.90419 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.25 11.44 59.85 0.68 0.93 16 2 N -0.35 -2.70 3.98 -67.60 -0.27 -2.97 16 3 C 0.11 0.80 10.99 -16.56 -0.18 0.62 16 4 C -0.27 -3.21 6.13 -105.04 -0.64 -3.86 16 5 C 0.59 8.47 7.81 -12.54 -0.10 8.37 16 6 O -0.52 -9.81 15.34 5.26 0.08 -9.73 16 7 N -0.71 -8.68 5.26 -54.46 -0.29 -8.96 16 8 C 0.14 2.15 4.01 -67.49 -0.27 1.88 16 9 H 0.11 2.08 7.50 -51.93 -0.39 1.69 16 10 C -0.18 -2.98 7.70 -25.64 -0.20 -3.17 16 11 C 0.20 3.67 4.36 -67.38 -0.29 3.38 16 12 H 0.08 1.40 8.10 -51.92 -0.42 0.98 16 13 N -0.72 -16.58 4.66 -52.89 -0.25 -16.83 16 14 C -0.25 -6.79 10.45 -15.06 -0.16 -6.94 16 15 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 16 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 17 N -0.93 -29.01 13.97 55.49 0.78 -28.23 16 18 Si 0.88 22.23 27.74 -169.99 -4.71 17.51 16 19 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 21 H -0.27 -6.67 6.52 56.52 0.37 -6.31 16 22 C -0.13 -1.81 0.92 -154.71 -0.14 -1.95 16 23 C -0.11 -1.20 7.15 -26.27 -0.19 -1.39 16 24 C -0.13 -1.58 8.08 -25.74 -0.21 -1.79 16 25 C -0.13 -1.84 7.62 -26.28 -0.20 -2.04 16 26 C 0.17 2.24 7.88 -16.91 -0.13 2.11 16 27 Cl 0.03 0.48 28.00 -51.86 -1.45 -0.97 16 28 N -0.29 -3.32 12.50 33.18 0.41 -2.91 16 29 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 30 H 0.10 -0.02 8.14 -51.93 -0.42 -0.44 16 31 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.19 0.54 7.46 -52.49 -0.39 0.14 16 33 H 0.39 3.35 5.90 -40.82 -0.24 3.11 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.45 8.14 -51.92 -0.42 1.03 16 36 H 0.36 8.41 5.47 -40.82 -0.22 8.19 16 37 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 38 H 0.07 0.60 6.99 -51.93 -0.36 0.24 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 370.88 15.07 5.59 5.59 Total: -1.00 -35.83 370.88 -8.05 -43.89 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.82 Total: 7.31 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -2.13 Total: -3.68 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: 0.39 Total: -59.91 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.51 kcal Atomic # 17 Polarization: 0.48 SS G_CDS: -1.45 Total: -0.97 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.83 -8.05 -43.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078781069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.351 kcal (2) G-P(sol) polarization free energy of solvation -35.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds