Wall clock time and date at job start Tue Mar 31 2020 20:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86798 * 120.00335 * 2 1 4 4 H 1.48495 * 109.47190 * 274.66412 * 3 2 1 5 5 H 1.48506 * 109.47079 * 34.65859 * 3 2 1 6 6 H 1.48495 * 109.47130 * 154.66008 * 3 2 1 7 7 C 1.39940 * 119.99605 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99617 * 162.19660 * 7 2 1 9 9 C 1.41434 * 120.00282 * 342.18970 * 7 2 1 10 10 C 1.40785 * 120.17757 * 335.20877 * 9 7 2 11 11 C 1.37713 * 120.04152 * 179.97438 * 10 9 7 12 12 C 1.38372 * 120.40646 * 359.74832 * 11 10 9 13 13 C 1.39874 * 120.36340 * 0.51141 * 12 11 10 14 14 C 1.47888 * 120.02740 * 179.76484 * 13 12 11 15 15 O 1.21551 * 119.99844 * 179.71599 * 14 13 12 16 16 N 1.34771 * 119.99939 * 359.72438 * 14 13 12 17 17 C 1.46500 * 120.00142 * 179.97438 * 16 14 13 18 18 H 1.09001 * 109.21993 * 325.00172 * 17 16 14 19 19 C 1.52706 * 109.22856 * 205.59522 * 17 16 14 20 20 C 1.53377 * 108.19998 * 189.08972 * 19 17 16 21 21 C 1.52695 * 108.22920 * 69.11733 * 20 19 17 22 22 C 1.50739 * 110.71676 * 309.12536 * 21 20 19 23 23 N 1.36618 * 117.14900 * 197.69976 * 22 21 20 24 24 H 0.97004 * 119.22217 * 0.49681 * 23 22 21 25 25 C 1.34269 * 121.55141 * 180.51597 * 23 22 21 26 26 O 1.22059 * 120.12506 * 179.91834 * 25 23 22 27 27 C 1.40561 * 119.75646 * 359.89397 * 25 23 22 28 28 C 1.36061 * 118.96701 * 359.82093 * 27 25 23 29 29 C 1.34806 * 122.75395 * 17.74690 * 22 21 20 30 30 C 1.39039 * 119.94751 * 359.48572 * 13 12 11 31 31 H 0.97004 * 120.00089 * 359.97438 * 1 2 3 32 32 H 1.07997 * 119.98075 * 359.95785 * 10 9 7 33 33 H 1.07999 * 119.79361 * 180.02562 * 11 10 9 34 34 H 1.08005 * 119.81740 * 180.26727 * 12 11 10 35 35 H 0.96998 * 120.00127 * 359.97438 * 16 14 13 36 36 H 1.09001 * 109.71656 * 308.76404 * 19 17 16 37 37 H 1.08995 * 109.71399 * 69.41171 * 19 17 16 38 38 H 1.09003 * 109.71019 * 188.79819 * 20 19 17 39 39 H 1.09002 * 109.71496 * 309.38532 * 20 19 17 40 40 H 1.09000 * 109.22487 * 69.43644 * 21 20 19 41 41 H 1.08997 * 109.22985 * 188.84770 * 21 20 19 42 42 H 1.07997 * 120.51377 * 179.79964 * 27 25 23 43 43 H 1.08000 * 120.02025 * 180.10809 * 28 27 25 44 44 H 1.07997 * 120.19952 * 180.23336 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3913 2.1033 -1.3954 5 1 1.4926 2.6222 0.7962 6 1 3.5857 1.4136 0.5992 7 6 2.0079 -1.2120 -0.0005 8 1 3.0492 -1.2342 -0.2865 9 6 1.3516 -2.4076 0.3736 10 6 0.2244 -2.3625 1.2159 11 6 -0.4129 -3.5284 1.5780 12 6 0.0443 -4.7494 1.1145 13 6 1.1658 -4.8145 0.2812 14 6 1.6512 -6.1239 -0.2056 15 8 2.6227 -6.1794 -0.9339 16 7 1.0161 -7.2555 0.1582 17 6 1.4965 -8.5527 -0.3245 18 1 1.8811 -8.4384 -1.3379 19 6 0.3367 -9.5460 -0.3356 20 6 0.9043 -10.9419 -0.6216 21 6 1.7208 -11.3831 0.5910 22 6 2.7102 -10.3162 0.9846 23 7 3.7458 -10.6935 1.7917 24 1 3.8135 -11.6192 2.0737 25 6 4.6720 -9.8132 2.2042 26 8 5.5857 -10.1785 2.9264 27 6 4.5858 -8.4695 1.8008 28 6 3.5599 -8.0887 0.9922 29 6 2.6042 -9.0363 0.5747 30 6 1.8206 -3.6466 -0.0938 31 1 -0.4850 0.8401 0.0004 32 1 -0.1406 -1.4129 1.5786 33 1 -1.2774 -3.4890 2.2240 34 1 -0.4653 -5.6575 1.4010 35 1 0.2409 -7.2112 0.7396 36 1 -0.1598 -9.5426 0.6347 37 1 -0.3748 -9.2717 -1.1144 38 1 0.0873 -11.6436 -0.7897 39 1 1.5445 -10.9051 -1.5030 40 1 1.0476 -11.5741 1.4267 41 1 2.2593 -12.2989 0.3473 42 1 5.3222 -7.7504 2.1279 43 1 3.4782 -7.0610 0.6705 44 1 2.6847 -3.6918 -0.7401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051064574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:57 Heat of formation + Delta-G solvation = -32.937148 kcal Electronic energy + Delta-G solvation = -28369.328070 eV Core-core repulsion = 24443.724853 eV Total energy + Delta-G solvation = -3925.603217 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.61347 -39.70104 -38.22069 -37.07968 -35.75241 -34.52712 -33.82932 -33.03953 -30.29002 -29.90123 -29.60091 -28.73400 -25.39791 -24.29952 -23.79294 -23.26298 -22.19223 -20.77864 -20.37302 -19.78550 -18.36308 -17.78761 -17.26932 -16.40835 -16.13330 -15.95493 -15.66639 -15.40785 -15.20045 -14.69762 -14.42414 -14.36253 -13.84692 -13.80345 -13.38990 -13.27846 -12.92883 -12.87090 -12.73608 -12.48179 -12.44531 -11.71889 -11.71136 -11.29629 -11.23472 -11.19356 -11.12436 -11.09583 -10.76642 -10.58383 -10.27632 -10.22468 -10.01044 -9.61080 -9.28210 -9.26311 -8.97472 -8.00493 -7.69355 -7.59963 -6.87535 -4.47456 0.77862 1.73979 2.07330 2.69497 2.76617 3.03718 3.05827 3.12181 3.39953 3.65036 3.71441 3.87816 4.01008 4.34784 4.48312 4.53916 4.57558 4.67827 4.97217 4.99713 5.10017 5.14136 5.29465 5.32501 5.46277 5.53923 5.56556 5.64440 5.71365 5.91448 6.02177 6.05593 6.16459 6.17406 6.33791 6.59906 6.65205 6.82681 6.87331 6.87742 6.93503 7.10506 7.29428 7.55663 7.72231 7.86414 7.89192 7.98185 8.11485 8.47221 8.66102 8.75222 8.78554 10.07989 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.017389 B = 0.002673 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.857932 B =10471.204693 C =11398.670278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.459 4.459 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.142 4.142 11 C -0.111 4.111 12 C -0.209 4.209 13 C -0.121 4.121 14 C 0.566 3.434 15 O -0.547 6.547 16 N -0.729 5.729 17 C 0.204 3.796 18 H 0.099 0.901 19 C -0.130 4.130 20 C -0.111 4.111 21 C -0.090 4.090 22 C 0.161 3.839 23 N -0.612 5.612 24 H 0.409 0.591 25 C 0.521 3.479 26 O -0.563 6.563 27 C -0.250 4.250 28 C -0.003 4.003 29 C -0.187 4.187 30 C -0.154 4.154 31 H 0.282 0.718 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.402 0.598 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.664 -18.697 0.292 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.097 3.903 10 C -0.161 4.161 11 C -0.130 4.130 12 C -0.229 4.229 13 C -0.124 4.124 14 C 0.358 3.642 15 O -0.427 6.427 16 N -0.381 5.381 17 C 0.098 3.902 18 H 0.117 0.883 19 C -0.168 4.168 20 C -0.149 4.149 21 C -0.128 4.128 22 C 0.053 3.947 23 N -0.245 5.245 24 H 0.246 0.754 25 C 0.322 3.678 26 O -0.447 6.447 27 C -0.271 4.271 28 C -0.024 4.024 29 C -0.194 4.194 30 C -0.175 4.175 31 H 0.093 0.907 32 H 0.139 0.861 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.239 0.761 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.166 0.834 43 H 0.167 0.833 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.595 -18.596 0.159 18.777 hybrid contribution -0.091 0.524 0.420 0.677 sum -2.685 -18.072 0.578 18.279 Atomic orbital electron populations 1.69800 1.07626 1.29454 1.34940 1.25915 0.94751 1.01463 0.92098 0.86279 0.80814 0.80426 0.79172 1.19475 1.19990 1.18282 1.19613 0.98303 0.91025 1.39832 0.90070 1.17583 0.91548 0.91866 0.89340 1.21511 0.98490 0.97086 0.99045 1.20613 0.99108 0.93011 1.00252 1.20377 0.99810 0.96446 1.06237 1.19277 0.99075 0.91227 1.02841 1.18923 0.81994 0.84471 0.78847 1.90691 1.27167 1.87583 1.37242 1.46088 1.33922 1.04999 1.53112 1.19393 0.91049 0.82870 0.96906 0.88280 1.21881 0.97342 0.94091 1.03451 1.21475 0.99684 0.96571 0.97172 1.20731 0.96305 0.95638 1.00100 1.20103 0.88604 0.94953 0.91046 1.43630 1.23493 1.14038 1.43332 0.75413 1.17076 0.81778 0.87229 0.81752 1.90977 1.33819 1.80410 1.39476 1.22100 1.03488 0.95420 1.06100 1.22063 0.89730 1.01416 0.89207 1.19408 1.01672 0.91759 1.06525 1.21211 1.02127 0.91181 1.02937 0.90708 0.86087 0.88806 0.89180 0.76133 0.90658 0.89904 0.89935 0.90558 0.88921 0.89567 0.83368 0.83270 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.60 10.97 55.55 0.61 -18.99 16 2 C 0.08 1.83 5.13 -17.34 -0.09 1.74 16 3 Si 0.91 18.13 29.60 -169.99 -5.03 13.10 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 7 C -0.46 -11.78 9.05 -37.73 -0.34 -12.12 16 8 H 0.08 2.03 7.91 -52.48 -0.41 1.61 16 9 C 0.10 2.53 5.57 -106.87 -0.59 1.93 16 10 C -0.14 -3.43 8.69 -38.81 -0.34 -3.77 16 11 C -0.11 -2.35 10.01 -39.72 -0.40 -2.75 16 12 C -0.21 -4.07 9.55 -38.92 -0.37 -4.44 16 13 C -0.12 -2.55 5.87 -105.04 -0.62 -3.17 16 14 C 0.57 10.39 6.26 -12.31 -0.08 10.31 16 15 O -0.55 -11.35 14.09 5.32 0.07 -11.28 16 16 N -0.73 -9.83 4.78 -56.04 -0.27 -10.10 16 17 C 0.20 2.25 2.59 -69.26 -0.18 2.07 16 18 H 0.10 1.25 7.56 -51.93 -0.39 0.86 16 19 C -0.13 -0.90 5.45 -26.69 -0.15 -1.04 16 20 C -0.11 -0.54 5.99 -26.69 -0.16 -0.70 16 21 C -0.09 -0.46 5.76 -28.02 -0.16 -0.62 16 22 C 0.16 1.49 6.64 -81.66 -0.54 0.95 16 23 N -0.61 -6.40 5.21 -11.26 -0.06 -6.46 16 24 H 0.41 3.16 8.67 -40.82 -0.35 2.80 16 25 C 0.52 7.71 7.69 -15.61 -0.12 7.59 16 26 O -0.56 -10.23 17.93 4.86 0.09 -10.14 16 27 C -0.25 -3.76 10.00 -39.49 -0.40 -4.15 16 28 C 0.00 -0.04 8.99 -39.35 -0.35 -0.40 16 29 C -0.19 -2.22 5.53 -104.86 -0.58 -2.80 16 30 C -0.15 -3.71 9.34 -38.44 -0.36 -4.07 16 31 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 32 H 0.12 3.03 6.17 -52.49 -0.32 2.70 16 33 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.09 1.41 6.38 -52.48 -0.33 1.08 16 35 H 0.40 4.71 6.61 -40.82 -0.27 4.44 16 36 H 0.07 0.47 8.10 -51.93 -0.42 0.04 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 40 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.15 2.19 8.06 -52.49 -0.42 1.77 16 43 H 0.15 2.58 4.42 -52.49 -0.23 2.34 16 44 H 0.11 2.63 7.64 -52.49 -0.40 2.23 16 LS Contribution 360.56 15.07 5.43 5.43 Total: -1.00 -31.38 360.56 -10.21 -41.59 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -5.24 Total: 12.27 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -5.82 Total: -15.42 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.28 Total: -35.55 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: 0.16 Total: -21.42 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.38 -10.21 -41.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051064574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.655 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds