Wall clock time and date at job start Tue Mar 31 2020 20:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86798 * 120.00335 * 2 1 4 4 H 1.48495 * 109.47190 * 274.66412 * 3 2 1 5 5 H 1.48506 * 109.47079 * 34.65859 * 3 2 1 6 6 H 1.48495 * 109.47130 * 154.66008 * 3 2 1 7 7 C 1.39940 * 119.99605 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99617 * 162.19660 * 7 2 1 9 9 C 1.41434 * 120.00282 * 342.18970 * 7 2 1 10 10 C 1.40785 * 120.17757 * 335.20877 * 9 7 2 11 11 C 1.37713 * 120.04152 * 179.97438 * 10 9 7 12 12 C 1.38372 * 120.40646 * 359.74832 * 11 10 9 13 13 C 1.39874 * 120.36340 * 0.51141 * 12 11 10 14 14 C 1.47888 * 120.02740 * 179.76484 * 13 12 11 15 15 O 1.21551 * 119.99844 * 179.71599 * 14 13 12 16 16 N 1.34771 * 119.99939 * 359.72438 * 14 13 12 17 17 C 1.46500 * 120.00142 * 179.97438 * 16 14 13 18 18 H 1.09001 * 109.21993 * 325.00172 * 17 16 14 19 19 C 1.52706 * 109.22856 * 205.59522 * 17 16 14 20 20 C 1.53377 * 108.19998 * 189.08972 * 19 17 16 21 21 C 1.52695 * 108.22920 * 69.11733 * 20 19 17 22 22 C 1.50739 * 110.71676 * 309.12536 * 21 20 19 23 23 N 1.36618 * 117.14900 * 197.69976 * 22 21 20 24 24 H 0.97004 * 119.22217 * 0.49681 * 23 22 21 25 25 C 1.34269 * 121.55141 * 180.51597 * 23 22 21 26 26 O 1.22059 * 120.12506 * 179.91834 * 25 23 22 27 27 C 1.40561 * 119.75646 * 359.89397 * 25 23 22 28 28 C 1.36061 * 118.96701 * 359.82093 * 27 25 23 29 29 C 1.34806 * 122.75395 * 17.74690 * 22 21 20 30 30 C 1.39039 * 119.94751 * 359.48572 * 13 12 11 31 31 H 0.97004 * 120.00089 * 359.97438 * 1 2 3 32 32 H 1.07997 * 119.98075 * 359.95785 * 10 9 7 33 33 H 1.07999 * 119.79361 * 180.02562 * 11 10 9 34 34 H 1.08005 * 119.81740 * 180.26727 * 12 11 10 35 35 H 0.96998 * 120.00127 * 359.97438 * 16 14 13 36 36 H 1.09001 * 109.71656 * 308.76404 * 19 17 16 37 37 H 1.08995 * 109.71399 * 69.41171 * 19 17 16 38 38 H 1.09003 * 109.71019 * 188.79819 * 20 19 17 39 39 H 1.09002 * 109.71496 * 309.38532 * 20 19 17 40 40 H 1.09000 * 109.22487 * 69.43644 * 21 20 19 41 41 H 1.08997 * 109.22985 * 188.84770 * 21 20 19 42 42 H 1.07997 * 120.51377 * 179.79964 * 27 25 23 43 43 H 1.08000 * 120.02025 * 180.10809 * 28 27 25 44 44 H 1.07997 * 120.19952 * 180.23336 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3913 2.1033 -1.3954 5 1 1.4926 2.6222 0.7962 6 1 3.5857 1.4136 0.5992 7 6 2.0079 -1.2120 -0.0005 8 1 3.0492 -1.2342 -0.2865 9 6 1.3516 -2.4076 0.3736 10 6 0.2244 -2.3625 1.2159 11 6 -0.4129 -3.5284 1.5780 12 6 0.0443 -4.7494 1.1145 13 6 1.1658 -4.8145 0.2812 14 6 1.6512 -6.1239 -0.2056 15 8 2.6227 -6.1794 -0.9339 16 7 1.0161 -7.2555 0.1582 17 6 1.4965 -8.5527 -0.3245 18 1 1.8811 -8.4384 -1.3379 19 6 0.3367 -9.5460 -0.3356 20 6 0.9043 -10.9419 -0.6216 21 6 1.7208 -11.3831 0.5910 22 6 2.7102 -10.3162 0.9846 23 7 3.7458 -10.6935 1.7917 24 1 3.8135 -11.6192 2.0737 25 6 4.6720 -9.8132 2.2042 26 8 5.5857 -10.1785 2.9264 27 6 4.5858 -8.4695 1.8008 28 6 3.5599 -8.0887 0.9922 29 6 2.6042 -9.0363 0.5747 30 6 1.8206 -3.6466 -0.0938 31 1 -0.4850 0.8401 0.0004 32 1 -0.1406 -1.4129 1.5786 33 1 -1.2774 -3.4890 2.2240 34 1 -0.4653 -5.6575 1.4010 35 1 0.2409 -7.2112 0.7396 36 1 -0.1598 -9.5426 0.6347 37 1 -0.3748 -9.2717 -1.1144 38 1 0.0873 -11.6436 -0.7897 39 1 1.5445 -10.9051 -1.5030 40 1 1.0476 -11.5741 1.4267 41 1 2.2593 -12.2989 0.3473 42 1 5.3222 -7.7504 2.1279 43 1 3.4782 -7.0610 0.6705 44 1 2.6847 -3.6918 -0.7401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051064574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:56 Heat of formation + Delta-G solvation = -53.327769 kcal Electronic energy + Delta-G solvation = -28370.212274 eV Core-core repulsion = 24443.724853 eV Total energy + Delta-G solvation = -3926.487421 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.62410 -41.06393 -39.41097 -38.67323 -36.80918 -35.61714 -35.47359 -34.22450 -31.88011 -31.60551 -30.46687 -29.79754 -27.21278 -25.31091 -24.91404 -24.17091 -23.50326 -22.50305 -21.48243 -20.97091 -19.59355 -19.15015 -18.28446 -17.81196 -17.38007 -17.12314 -16.88159 -16.84423 -16.49708 -16.30821 -15.54595 -15.22647 -15.08953 -15.08614 -14.63363 -14.42265 -14.29870 -14.18742 -13.83367 -13.66052 -13.51297 -13.28371 -12.96695 -12.83983 -12.57074 -12.46867 -12.22754 -12.02488 -11.96188 -11.75460 -11.72172 -11.39715 -11.28709 -11.14849 -11.06582 -10.82497 -10.21620 -9.48547 -9.39088 -9.02481 -8.68547 -6.39627 -0.22988 0.38042 0.66027 0.93955 1.37505 1.44921 1.52346 1.82692 2.11226 2.19668 2.23635 2.56956 2.75421 3.34763 3.57200 3.68099 3.73299 3.86838 4.04532 4.09001 4.14035 4.19852 4.35397 4.41439 4.51605 4.56031 4.64654 4.84969 4.91769 4.98450 5.02447 5.05667 5.09138 5.11757 5.17910 5.26512 5.27108 5.34357 5.40439 5.49528 5.56066 5.70953 5.81036 5.84195 5.97972 6.01270 6.23625 6.59492 6.64128 6.87381 6.89937 6.92228 7.28608 8.29547 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.017389 B = 0.002673 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.857932 B =10471.204693 C =11398.670278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.040 3.960 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.260 1.260 6 H -0.263 1.263 7 C -0.504 4.504 8 H 0.068 0.932 9 C 0.072 3.928 10 C -0.162 4.162 11 C -0.111 4.111 12 C -0.186 4.186 13 C -0.126 4.126 14 C 0.566 3.434 15 O -0.579 6.579 16 N -0.706 5.706 17 C 0.204 3.796 18 H 0.079 0.921 19 C -0.124 4.124 20 C -0.106 4.106 21 C -0.089 4.089 22 C 0.200 3.800 23 N -0.594 5.594 24 H 0.428 0.572 25 C 0.518 3.482 26 O -0.606 6.606 27 C -0.284 4.284 28 C 0.000 4.000 29 C -0.216 4.216 30 C -0.186 4.186 31 H 0.291 0.709 32 H 0.108 0.892 33 H 0.130 0.870 34 H 0.142 0.858 35 H 0.415 0.585 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.070 0.930 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.133 0.867 43 H 0.120 0.880 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.775 -22.439 0.780 23.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.175 4.175 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.184 1.184 6 H -0.187 1.187 7 C -0.533 4.533 8 H 0.086 0.914 9 C 0.070 3.930 10 C -0.182 4.182 11 C -0.129 4.129 12 C -0.206 4.206 13 C -0.129 4.129 14 C 0.357 3.643 15 O -0.461 6.461 16 N -0.358 5.358 17 C 0.099 3.901 18 H 0.097 0.903 19 C -0.162 4.162 20 C -0.145 4.145 21 C -0.126 4.126 22 C 0.090 3.910 23 N -0.226 5.226 24 H 0.268 0.732 25 C 0.320 3.680 26 O -0.493 6.493 27 C -0.305 4.305 28 C -0.022 4.022 29 C -0.222 4.222 30 C -0.207 4.207 31 H 0.101 0.899 32 H 0.126 0.874 33 H 0.147 0.853 34 H 0.160 0.840 35 H 0.253 0.747 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.135 0.865 39 H 0.089 0.911 40 H 0.142 0.858 41 H 0.135 0.865 42 H 0.151 0.849 43 H 0.137 0.863 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.763 -22.404 0.654 23.142 hybrid contribution 0.778 1.460 0.246 1.673 sum -4.985 -20.944 0.899 21.547 Atomic orbital electron populations 1.69824 1.08690 1.30734 1.35469 1.26649 0.95552 1.04170 0.91167 0.85245 0.79181 0.76227 0.79411 1.18859 1.18418 1.18749 1.19794 0.98222 0.92704 1.42621 0.91362 1.17867 0.92604 0.92345 0.90231 1.21526 0.98842 0.97992 0.99824 1.21019 0.99575 0.92358 0.99981 1.20889 0.98239 0.97950 1.03474 1.19626 0.99050 0.91798 1.02384 1.18562 0.81919 0.84975 0.78884 1.90680 1.28584 1.88010 1.38822 1.45913 1.33203 1.04698 1.51989 1.19625 0.92729 0.82368 0.95363 0.90312 1.21937 0.95496 0.93808 1.04928 1.21531 1.00538 0.95695 0.96697 1.21033 0.95683 0.94610 1.01288 1.20814 0.87609 0.95139 0.87439 1.43479 1.22469 1.14394 1.42209 0.73194 1.16918 0.82095 0.87412 0.81549 1.90946 1.35743 1.81038 1.41592 1.21980 1.04278 0.96105 1.08174 1.21960 0.90495 1.00873 0.88883 1.19429 1.01908 0.92496 1.08325 1.21176 1.02673 0.92519 1.04311 0.89860 0.87430 0.85260 0.84027 0.74664 0.88799 0.89048 0.86541 0.91092 0.85782 0.86539 0.84914 0.86263 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.01 10.97 21.83 0.24 -41.77 16 2 C 0.04 2.01 5.13 85.25 0.44 2.45 16 3 Si 0.98 38.56 29.60 68.60 2.03 40.59 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 6 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 7 C -0.50 -27.84 9.05 23.47 0.21 -27.63 16 8 H 0.07 3.75 7.91 -2.91 -0.02 3.73 16 9 C 0.07 3.89 5.57 -21.32 -0.12 3.77 16 10 C -0.16 -8.10 8.69 22.77 0.20 -7.90 16 11 C -0.11 -4.55 10.01 22.18 0.22 -4.33 16 12 C -0.19 -6.87 9.55 22.70 0.22 -6.65 16 13 C -0.13 -5.37 5.87 -20.13 -0.12 -5.49 16 14 C 0.57 21.07 6.26 86.80 0.54 21.61 16 15 O -0.58 -25.35 14.09 -3.88 -0.05 -25.40 16 16 N -0.71 -17.70 4.78 -449.49 -2.15 -19.85 16 17 C 0.20 4.03 2.59 44.13 0.11 4.15 16 18 H 0.08 1.92 7.56 -2.39 -0.02 1.90 16 19 C -0.12 -1.08 5.45 30.62 0.17 -0.91 16 20 C -0.11 -0.40 5.99 30.62 0.18 -0.21 16 21 C -0.09 -0.32 5.76 29.76 0.17 -0.15 16 22 C 0.20 2.94 6.64 41.04 0.27 3.21 16 23 N -0.59 -10.83 5.21 -307.88 -1.61 -12.43 16 24 H 0.43 4.98 8.67 -92.71 -0.80 4.17 16 25 C 0.52 15.37 7.69 84.89 0.65 16.03 16 26 O -0.61 -22.45 17.93 -5.51 -0.10 -22.55 16 27 C -0.28 -9.07 10.00 22.33 0.22 -8.84 16 28 C 0.00 -0.01 8.99 22.42 0.20 0.20 16 29 C -0.22 -4.73 5.53 -20.02 -0.11 -4.84 16 30 C -0.19 -9.60 9.34 23.01 0.21 -9.39 16 31 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 32 H 0.11 5.59 6.17 -2.91 -0.02 5.57 16 33 H 0.13 4.35 8.06 -2.91 -0.02 4.32 16 34 H 0.14 3.73 6.38 -2.91 -0.02 3.71 16 35 H 0.41 8.10 6.61 -92.71 -0.61 7.49 16 36 H 0.09 0.54 8.10 -2.39 -0.02 0.52 16 37 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.12 -0.16 8.14 -2.39 -0.02 -0.18 16 39 H 0.07 0.41 8.10 -2.39 -0.02 0.39 16 40 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.12 -0.08 8.14 -2.39 -0.02 -0.09 16 42 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 43 H 0.12 4.43 4.42 -2.91 -0.01 4.41 16 44 H 0.09 4.63 7.64 -2.91 -0.02 4.61 16 Total: -1.00 -77.83 360.56 1.70 -76.12 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: -0.34 Total: 30.21 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: 3.68 Total: -24.93 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -3.52 Total: -74.05 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -0.15 Total: -47.96 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -77.83 1.70 -76.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051064574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.796 kcal (2) G-P(sol) polarization free energy of solvation -77.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds