Wall clock time and date at job start Tue Mar 31 2020 20:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86796 * 120.00355 * 2 1 4 4 H 1.48500 * 109.47060 * 274.66248 * 3 2 1 5 5 H 1.48508 * 109.46911 * 34.65671 * 3 2 1 6 6 H 1.48496 * 109.47490 * 154.65754 * 3 2 1 7 7 C 1.39942 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99631 * 162.19438 * 7 2 1 9 9 C 1.41434 * 119.99789 * 342.19331 * 7 2 1 10 10 C 1.40780 * 120.18275 * 335.20147 * 9 7 2 11 11 C 1.37710 * 120.04337 * 179.97438 * 10 9 7 12 12 C 1.38366 * 120.41059 * 0.02562 * 11 10 9 13 13 C 1.39880 * 120.36056 * 359.72291 * 12 11 10 14 14 C 1.47882 * 120.02853 * 180.27578 * 13 12 11 15 15 O 1.21548 * 120.00123 * 180.27477 * 14 13 12 16 16 N 1.34781 * 120.00176 * 0.27964 * 14 13 12 17 17 C 1.46491 * 120.00318 * 179.97438 * 16 14 13 18 18 H 1.09002 * 109.22694 * 34.39656 * 17 16 14 19 19 C 1.52706 * 109.22864 * 153.75965 * 17 16 14 20 20 C 1.53401 * 108.20387 * 170.95221 * 19 17 16 21 21 C 1.52687 * 108.21468 * 290.88426 * 20 19 17 22 22 C 1.50739 * 110.72547 * 50.88959 * 21 20 19 23 23 N 1.36610 * 117.14655 * 162.29925 * 22 21 20 24 24 H 0.97003 * 119.22754 * 359.38365 * 23 22 21 25 25 C 1.34271 * 121.54446 * 179.35494 * 23 22 21 26 26 O 1.22066 * 120.11853 * 180.21260 * 25 23 22 27 27 C 1.40544 * 119.75776 * 0.19656 * 25 23 22 28 28 C 1.36060 * 118.97195 * 0.16093 * 27 25 23 29 29 C 1.34805 * 122.74543 * 342.21802 * 22 21 20 30 30 C 1.39038 * 119.94821 * 0.55539 * 13 12 11 31 31 H 0.96997 * 119.99732 * 0.02562 * 1 2 3 32 32 H 1.08001 * 119.97885 * 359.96250 * 10 9 7 33 33 H 1.08002 * 119.79469 * 180.02562 * 11 10 9 34 34 H 1.07999 * 119.82103 * 179.97438 * 12 11 10 35 35 H 0.97001 * 119.99723 * 359.97438 * 16 14 13 36 36 H 1.09001 * 109.71701 * 290.63038 * 19 17 16 37 37 H 1.09001 * 109.71735 * 51.27812 * 19 17 16 38 38 H 1.08997 * 109.71109 * 171.20320 * 20 19 17 39 39 H 1.09009 * 109.75760 * 50.58808 * 20 19 17 40 40 H 1.08996 * 109.22715 * 290.56562 * 21 20 19 41 41 H 1.09007 * 109.22563 * 171.21108 * 21 20 19 42 42 H 1.08004 * 120.51385 * 180.14841 * 27 25 23 43 43 H 1.08002 * 120.02549 * 179.88356 * 28 27 25 44 44 H 1.07997 * 120.20095 * 179.72266 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3913 2.1032 -1.3954 5 1 1.4924 2.6222 0.7962 6 1 3.5856 1.4137 0.5992 7 6 2.0079 -1.2120 -0.0005 8 1 3.0491 -1.2342 -0.2866 9 6 1.3514 -2.4076 0.3735 10 6 0.2243 -2.3625 1.2158 11 6 -0.4129 -3.5284 1.5778 12 6 0.0475 -4.7498 1.1189 13 6 1.1627 -4.8140 0.2770 14 6 1.6448 -6.1230 -0.2141 15 8 2.6169 -6.1786 -0.9416 16 7 1.0063 -7.2543 0.1450 17 6 1.4836 -8.5509 -0.3418 18 1 2.5705 -8.5269 -0.4203 19 6 1.0756 -9.6406 0.6471 20 6 1.3815 -11.0031 0.0120 21 6 0.4141 -11.2160 -1.1499 22 6 0.4159 -10.0228 -2.0711 23 7 -0.0967 -10.2024 -3.3246 24 1 -0.4301 -11.0770 -3.5792 25 6 -0.1503 -9.1964 -4.2123 26 8 -0.6173 -9.3849 -5.3242 27 6 0.3329 -7.9255 -3.8564 28 6 0.8512 -7.7423 -2.6118 29 6 0.8940 -8.8176 -1.7022 30 6 1.8210 -3.6467 -0.0932 31 1 -0.4849 0.8400 -0.0004 32 1 -0.1406 -1.4130 1.5786 33 1 -1.2775 -3.4891 2.2239 34 1 -0.4593 -5.6583 1.4091 35 1 0.2307 -7.2099 0.7259 36 1 1.6431 -9.5298 1.5711 37 1 0.0090 -9.5647 0.8586 38 1 1.2470 -11.7921 0.7519 39 1 2.4073 -11.0158 -0.3565 40 1 -0.5916 -11.3647 -0.7570 41 1 0.7147 -12.1019 -1.7094 42 1 0.2935 -7.1071 -4.5600 43 1 1.2290 -6.7732 -2.3210 44 1 2.6851 -3.6919 -0.7394 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051064576.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:02 Heat of formation + Delta-G solvation = -33.259716 kcal Electronic energy + Delta-G solvation = -28390.473750 eV Core-core repulsion = 24464.856546 eV Total energy + Delta-G solvation = -3925.617204 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.60111 -39.69162 -38.21306 -37.07540 -35.74062 -34.52494 -33.82613 -33.02881 -30.28729 -29.89943 -29.59139 -28.73012 -25.39594 -24.29024 -23.78528 -23.25242 -22.18919 -20.77626 -20.36843 -19.78334 -18.35719 -17.78186 -17.25808 -16.39509 -16.12379 -15.95031 -15.65527 -15.39184 -15.19839 -14.69893 -14.41380 -14.35290 -13.84370 -13.79921 -13.38847 -13.27523 -12.91969 -12.85904 -12.73843 -12.48735 -12.42365 -11.80023 -11.62409 -11.29897 -11.24140 -11.18128 -11.12175 -11.09095 -10.76195 -10.58711 -10.27468 -10.20771 -10.00208 -9.60916 -9.28381 -9.25523 -8.97621 -7.99138 -7.69148 -7.59842 -6.87162 -4.47229 0.79216 1.75174 2.07641 2.69733 2.77814 3.03791 3.05902 3.11976 3.40628 3.66074 3.71948 3.87930 4.01639 4.35146 4.48917 4.53949 4.57901 4.68726 4.97982 5.00390 5.10454 5.14779 5.30063 5.33297 5.46753 5.53788 5.57199 5.64833 5.71276 5.91594 6.03041 6.05962 6.16895 6.18511 6.35233 6.61263 6.65756 6.82803 6.87681 6.88904 6.93745 7.10774 7.29629 7.55849 7.72465 7.86651 7.89302 7.99663 8.11701 8.47393 8.66481 8.75440 8.78731 10.08368 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.016636 B = 0.002717 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.699881 B =10303.358007 C =11192.479309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.459 4.459 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.142 4.142 11 C -0.111 4.111 12 C -0.209 4.209 13 C -0.121 4.121 14 C 0.566 3.434 15 O -0.547 6.547 16 N -0.729 5.729 17 C 0.204 3.796 18 H 0.100 0.900 19 C -0.130 4.130 20 C -0.111 4.111 21 C -0.090 4.090 22 C 0.161 3.839 23 N -0.612 5.612 24 H 0.409 0.591 25 C 0.521 3.479 26 O -0.563 6.563 27 C -0.249 4.249 28 C -0.002 4.002 29 C -0.187 4.187 30 C -0.154 4.154 31 H 0.282 0.718 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.402 0.598 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.877 -19.049 3.972 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.097 3.903 10 C -0.162 4.162 11 C -0.130 4.130 12 C -0.229 4.229 13 C -0.124 4.124 14 C 0.358 3.642 15 O -0.427 6.427 16 N -0.381 5.381 17 C 0.098 3.902 18 H 0.117 0.883 19 C -0.168 4.168 20 C -0.149 4.149 21 C -0.128 4.128 22 C 0.053 3.947 23 N -0.245 5.245 24 H 0.246 0.754 25 C 0.322 3.678 26 O -0.446 6.446 27 C -0.270 4.270 28 C -0.024 4.024 29 C -0.194 4.194 30 C -0.175 4.175 31 H 0.093 0.907 32 H 0.139 0.861 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.239 0.761 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.167 0.833 43 H 0.166 0.834 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.613 -18.845 2.769 19.057 hybrid contribution -0.366 0.564 0.055 0.675 sum -0.979 -18.280 2.824 18.523 Atomic orbital electron populations 1.69798 1.07629 1.29469 1.34853 1.25916 0.94750 1.01465 0.92111 0.86278 0.80771 0.80438 0.79194 1.19461 1.19993 1.18304 1.19609 0.98306 0.91027 1.39847 0.90077 1.17583 0.91547 0.91858 0.89334 1.21508 0.98493 0.97089 0.99080 1.20610 0.99026 0.93006 1.00322 1.20376 0.99989 0.96434 1.06105 1.19278 0.99110 0.91234 1.02782 1.18924 0.81898 0.84487 0.78937 1.90693 1.27176 1.87485 1.37335 1.46087 1.34095 1.05194 1.52759 1.19384 0.99472 0.83159 0.88197 0.88260 1.21886 1.02724 0.93575 0.98565 1.21478 0.99567 0.97355 0.96494 1.20728 1.02197 0.94056 0.95794 1.20093 0.93671 0.96026 0.84932 1.43628 1.53691 1.14944 1.12229 0.75414 1.17072 0.80783 0.85520 0.84451 1.90979 1.49221 1.83932 1.20510 1.22104 1.08347 0.97286 0.99289 1.22021 0.88805 0.99988 0.91548 1.19402 1.08635 0.92291 0.99057 1.21207 1.01991 0.91211 1.03061 0.90692 0.86094 0.88811 0.89184 0.76140 0.89932 0.90665 0.89947 0.90564 0.88931 0.89574 0.83333 0.83378 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.68 10.97 55.55 0.61 -19.07 16 2 C 0.08 1.83 5.13 -17.34 -0.09 1.74 16 3 Si 0.91 18.13 29.59 -169.99 -5.03 13.10 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 7 C -0.46 -11.78 9.05 -37.73 -0.34 -12.12 16 8 H 0.08 2.02 7.91 -52.49 -0.41 1.61 16 9 C 0.10 2.53 5.57 -106.87 -0.59 1.94 16 10 C -0.14 -3.44 8.69 -38.81 -0.34 -3.78 16 11 C -0.11 -2.35 10.01 -39.73 -0.40 -2.75 16 12 C -0.21 -4.08 9.55 -38.92 -0.37 -4.45 16 13 C -0.12 -2.55 5.87 -105.04 -0.62 -3.17 16 14 C 0.57 10.40 6.25 -12.31 -0.08 10.32 16 15 O -0.55 -11.37 14.16 5.32 0.08 -11.30 16 16 N -0.73 -9.85 4.77 -56.05 -0.27 -10.11 16 17 C 0.20 2.25 2.59 -69.27 -0.18 2.07 16 18 H 0.10 1.25 7.54 -51.93 -0.39 0.85 16 19 C -0.13 -0.89 5.46 -26.67 -0.15 -1.04 16 20 C -0.11 -0.54 6.00 -26.68 -0.16 -0.70 16 21 C -0.09 -0.46 5.76 -28.02 -0.16 -0.62 16 22 C 0.16 1.51 6.64 -81.66 -0.54 0.97 16 23 N -0.61 -6.52 5.21 -11.26 -0.06 -6.58 16 24 H 0.41 3.23 8.67 -40.82 -0.35 2.87 16 25 C 0.52 7.86 7.69 -15.62 -0.12 7.74 16 26 O -0.56 -10.38 17.93 4.86 0.09 -10.29 16 27 C -0.25 -3.84 10.00 -39.50 -0.40 -4.23 16 28 C 0.00 -0.04 9.01 -39.35 -0.35 -0.39 16 29 C -0.19 -2.25 5.53 -104.86 -0.58 -2.83 16 30 C -0.15 -3.71 9.34 -38.44 -0.36 -4.07 16 31 H 0.28 6.36 8.30 -40.82 -0.34 6.03 16 32 H 0.12 3.02 6.17 -52.49 -0.32 2.70 16 33 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.09 1.41 6.38 -52.49 -0.33 1.08 16 35 H 0.40 4.72 6.62 -40.82 -0.27 4.45 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.47 8.10 -51.93 -0.42 0.04 16 38 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.08 0.40 8.11 -51.92 -0.42 -0.02 16 40 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.30 8.14 -51.92 -0.42 -0.13 16 42 H 0.15 2.27 8.06 -52.48 -0.42 1.85 16 43 H 0.15 2.61 4.50 -52.49 -0.24 2.38 16 44 H 0.11 2.63 7.64 -52.49 -0.40 2.23 16 LS Contribution 360.69 15.07 5.44 5.44 Total: -1.00 -31.48 360.69 -10.21 -41.69 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -5.24 Total: 12.50 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -5.82 Total: -15.37 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.28 Total: -35.77 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: 0.16 Total: -21.59 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.48 -10.21 -41.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051064576.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.431 kcal (2) G-P(sol) polarization free energy of solvation -31.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds