Wall clock time and date at job start Tue Mar 31 2020 20:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86796 * 120.00355 * 2 1 4 4 H 1.48500 * 109.47060 * 274.66248 * 3 2 1 5 5 H 1.48508 * 109.46911 * 34.65671 * 3 2 1 6 6 H 1.48496 * 109.47490 * 154.65754 * 3 2 1 7 7 C 1.39942 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99631 * 162.19438 * 7 2 1 9 9 C 1.41434 * 119.99789 * 342.19331 * 7 2 1 10 10 C 1.40780 * 120.18275 * 335.20147 * 9 7 2 11 11 C 1.37710 * 120.04337 * 179.97438 * 10 9 7 12 12 C 1.38366 * 120.41059 * 0.02562 * 11 10 9 13 13 C 1.39880 * 120.36056 * 359.72291 * 12 11 10 14 14 C 1.47882 * 120.02853 * 180.27578 * 13 12 11 15 15 O 1.21548 * 120.00123 * 180.27477 * 14 13 12 16 16 N 1.34781 * 120.00176 * 0.27964 * 14 13 12 17 17 C 1.46491 * 120.00318 * 179.97438 * 16 14 13 18 18 H 1.09002 * 109.22694 * 34.39656 * 17 16 14 19 19 C 1.52706 * 109.22864 * 153.75965 * 17 16 14 20 20 C 1.53401 * 108.20387 * 170.95221 * 19 17 16 21 21 C 1.52687 * 108.21468 * 290.88426 * 20 19 17 22 22 C 1.50739 * 110.72547 * 50.88959 * 21 20 19 23 23 N 1.36610 * 117.14655 * 162.29925 * 22 21 20 24 24 H 0.97003 * 119.22754 * 359.38365 * 23 22 21 25 25 C 1.34271 * 121.54446 * 179.35494 * 23 22 21 26 26 O 1.22066 * 120.11853 * 180.21260 * 25 23 22 27 27 C 1.40544 * 119.75776 * 0.19656 * 25 23 22 28 28 C 1.36060 * 118.97195 * 0.16093 * 27 25 23 29 29 C 1.34805 * 122.74543 * 342.21802 * 22 21 20 30 30 C 1.39038 * 119.94821 * 0.55539 * 13 12 11 31 31 H 0.96997 * 119.99732 * 0.02562 * 1 2 3 32 32 H 1.08001 * 119.97885 * 359.96250 * 10 9 7 33 33 H 1.08002 * 119.79469 * 180.02562 * 11 10 9 34 34 H 1.07999 * 119.82103 * 179.97438 * 12 11 10 35 35 H 0.97001 * 119.99723 * 359.97438 * 16 14 13 36 36 H 1.09001 * 109.71701 * 290.63038 * 19 17 16 37 37 H 1.09001 * 109.71735 * 51.27812 * 19 17 16 38 38 H 1.08997 * 109.71109 * 171.20320 * 20 19 17 39 39 H 1.09009 * 109.75760 * 50.58808 * 20 19 17 40 40 H 1.08996 * 109.22715 * 290.56562 * 21 20 19 41 41 H 1.09007 * 109.22563 * 171.21108 * 21 20 19 42 42 H 1.08004 * 120.51385 * 180.14841 * 27 25 23 43 43 H 1.08002 * 120.02549 * 179.88356 * 28 27 25 44 44 H 1.07997 * 120.20095 * 179.72266 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3913 2.1032 -1.3954 5 1 1.4924 2.6222 0.7962 6 1 3.5856 1.4137 0.5992 7 6 2.0079 -1.2120 -0.0005 8 1 3.0491 -1.2342 -0.2866 9 6 1.3514 -2.4076 0.3735 10 6 0.2243 -2.3625 1.2158 11 6 -0.4129 -3.5284 1.5778 12 6 0.0475 -4.7498 1.1189 13 6 1.1627 -4.8140 0.2770 14 6 1.6448 -6.1230 -0.2141 15 8 2.6169 -6.1786 -0.9416 16 7 1.0063 -7.2543 0.1450 17 6 1.4836 -8.5509 -0.3418 18 1 2.5705 -8.5269 -0.4203 19 6 1.0756 -9.6406 0.6471 20 6 1.3815 -11.0031 0.0120 21 6 0.4141 -11.2160 -1.1499 22 6 0.4159 -10.0228 -2.0711 23 7 -0.0967 -10.2024 -3.3246 24 1 -0.4301 -11.0770 -3.5792 25 6 -0.1503 -9.1964 -4.2123 26 8 -0.6173 -9.3849 -5.3242 27 6 0.3329 -7.9255 -3.8564 28 6 0.8512 -7.7423 -2.6118 29 6 0.8940 -8.8176 -1.7022 30 6 1.8210 -3.6467 -0.0932 31 1 -0.4849 0.8400 -0.0004 32 1 -0.1406 -1.4130 1.5786 33 1 -1.2775 -3.4891 2.2239 34 1 -0.4593 -5.6583 1.4091 35 1 0.2307 -7.2099 0.7259 36 1 1.6431 -9.5298 1.5711 37 1 0.0090 -9.5647 0.8586 38 1 1.2470 -11.7921 0.7519 39 1 2.4073 -11.0158 -0.3565 40 1 -0.5916 -11.3647 -0.7570 41 1 0.7147 -12.1019 -1.7094 42 1 0.2935 -7.1071 -4.5600 43 1 1.2290 -6.7732 -2.3210 44 1 2.6851 -3.6919 -0.7394 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051064576.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:01 Heat of formation + Delta-G solvation = -53.805024 kcal Electronic energy + Delta-G solvation = -28391.364662 eV Core-core repulsion = 24464.856546 eV Total energy + Delta-G solvation = -3926.508116 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.62823 -41.06121 -39.41303 -38.67359 -36.80959 -35.61902 -35.48151 -34.22529 -31.88203 -31.60626 -30.47074 -29.79764 -27.21396 -25.31518 -24.91669 -24.17403 -23.50365 -22.50328 -21.48433 -20.97139 -19.59707 -19.15449 -18.28928 -17.81211 -17.37883 -17.12803 -16.87571 -16.83748 -16.50734 -16.30803 -15.54885 -15.22810 -15.09001 -15.08683 -14.62576 -14.43558 -14.30720 -14.18698 -13.84041 -13.65925 -13.48500 -13.32091 -12.97094 -12.83085 -12.55863 -12.47410 -12.23394 -12.02920 -11.95595 -11.75349 -11.71853 -11.39733 -11.29441 -11.15924 -11.06817 -10.82260 -10.22064 -9.48588 -9.39086 -9.03067 -8.68579 -6.39708 -0.23869 0.38074 0.65340 0.93915 1.37481 1.45012 1.52496 1.82121 2.11518 2.19035 2.24115 2.56182 2.75460 3.34527 3.56491 3.68793 3.72300 3.86334 4.04764 4.08661 4.14026 4.19604 4.34997 4.41402 4.51655 4.56095 4.64553 4.84803 4.91731 4.98411 5.01973 5.05659 5.08955 5.11159 5.17970 5.26717 5.27046 5.34332 5.40575 5.49507 5.56208 5.70639 5.80999 5.83502 5.98002 6.01238 6.23656 6.59475 6.64180 6.87449 6.89238 6.92144 7.28776 8.29504 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.016636 B = 0.002717 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.699881 B =10303.358007 C =11192.479309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.039 3.961 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.260 1.260 6 H -0.261 1.261 7 C -0.504 4.504 8 H 0.069 0.931 9 C 0.072 3.928 10 C -0.162 4.162 11 C -0.111 4.111 12 C -0.186 4.186 13 C -0.126 4.126 14 C 0.566 3.434 15 O -0.579 6.579 16 N -0.706 5.706 17 C 0.204 3.796 18 H 0.080 0.920 19 C -0.124 4.124 20 C -0.106 4.106 21 C -0.089 4.089 22 C 0.200 3.800 23 N -0.593 5.593 24 H 0.428 0.572 25 C 0.518 3.482 26 O -0.606 6.606 27 C -0.285 4.285 28 C 0.001 3.999 29 C -0.216 4.216 30 C -0.186 4.186 31 H 0.290 0.710 32 H 0.108 0.892 33 H 0.129 0.871 34 H 0.142 0.858 35 H 0.415 0.585 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.117 0.883 39 H 0.071 0.929 40 H 0.124 0.876 41 H 0.117 0.883 42 H 0.132 0.868 43 H 0.118 0.882 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.389 -23.053 6.576 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.176 4.176 3 Si 0.800 3.200 4 H -0.191 1.191 5 H -0.184 1.184 6 H -0.184 1.184 7 C -0.533 4.533 8 H 0.088 0.912 9 C 0.070 3.930 10 C -0.182 4.182 11 C -0.129 4.129 12 C -0.206 4.206 13 C -0.129 4.129 14 C 0.357 3.643 15 O -0.461 6.461 16 N -0.358 5.358 17 C 0.099 3.901 18 H 0.098 0.902 19 C -0.161 4.161 20 C -0.144 4.144 21 C -0.126 4.126 22 C 0.090 3.910 23 N -0.225 5.225 24 H 0.268 0.732 25 C 0.321 3.679 26 O -0.493 6.493 27 C -0.306 4.306 28 C -0.021 4.021 29 C -0.222 4.222 30 C -0.207 4.207 31 H 0.101 0.899 32 H 0.126 0.874 33 H 0.147 0.853 34 H 0.160 0.840 35 H 0.253 0.747 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.135 0.865 39 H 0.089 0.911 40 H 0.142 0.858 41 H 0.135 0.865 42 H 0.149 0.851 43 H 0.135 0.865 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.156 -22.919 5.414 23.648 hybrid contribution 0.073 1.570 -0.687 1.715 sum -2.083 -21.350 4.727 21.966 Atomic orbital electron populations 1.69829 1.08770 1.30725 1.35539 1.26675 0.95540 1.04271 0.91154 0.85230 0.79270 0.76142 0.79324 1.19087 1.18425 1.18450 1.19801 0.98272 0.92668 1.42563 0.91248 1.17870 0.92603 0.92345 0.90225 1.21525 0.98836 0.97989 0.99849 1.21017 0.99487 0.92359 1.00068 1.20888 0.98377 0.97943 1.03356 1.19628 0.99090 0.91817 1.02326 1.18563 0.81939 0.84982 0.78857 1.90681 1.28805 1.87899 1.38726 1.45911 1.33440 1.04884 1.51579 1.19626 0.98407 0.82983 0.89061 0.90196 1.21942 1.03937 0.92717 0.97534 1.21536 0.99184 0.96835 0.96892 1.21037 1.04219 0.92269 0.95106 1.20825 0.89122 0.96682 0.84331 1.43475 1.52219 1.14836 1.11991 0.73168 1.16896 0.80581 0.86030 0.84437 1.90947 1.51405 1.84657 1.22309 1.21973 1.11135 0.97884 0.99647 1.21920 0.88170 0.99963 0.92067 1.19439 1.11020 0.92566 0.99167 1.21173 1.02579 0.92544 1.04378 0.89903 0.87437 0.85270 0.84032 0.74674 0.88933 0.88849 0.86500 0.91053 0.85795 0.86518 0.85055 0.86466 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.49 10.97 21.83 0.24 -42.25 16 2 C 0.04 1.96 5.13 85.26 0.44 2.40 16 3 Si 0.98 38.60 29.59 68.60 2.03 40.63 16 4 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 6 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 7 C -0.50 -27.81 9.05 23.47 0.21 -27.60 16 8 H 0.07 3.80 7.91 -2.91 -0.02 3.78 16 9 C 0.07 3.89 5.57 -21.32 -0.12 3.78 16 10 C -0.16 -8.11 8.69 22.77 0.20 -7.91 16 11 C -0.11 -4.55 10.01 22.18 0.22 -4.33 16 12 C -0.19 -6.88 9.55 22.70 0.22 -6.66 16 13 C -0.13 -5.38 5.87 -20.13 -0.12 -5.50 16 14 C 0.57 21.08 6.25 86.80 0.54 21.63 16 15 O -0.58 -25.38 14.16 -3.87 -0.05 -25.44 16 16 N -0.71 -17.70 4.77 -449.51 -2.14 -19.84 16 17 C 0.20 4.03 2.59 44.13 0.11 4.14 16 18 H 0.08 1.93 7.54 -2.39 -0.02 1.91 16 19 C -0.12 -1.05 5.46 30.63 0.17 -0.88 16 20 C -0.11 -0.38 6.00 30.62 0.18 -0.20 16 21 C -0.09 -0.32 5.76 29.76 0.17 -0.15 16 22 C 0.20 3.00 6.64 41.04 0.27 3.27 16 23 N -0.59 -11.06 5.21 -307.89 -1.61 -12.67 16 24 H 0.43 5.12 8.67 -92.71 -0.80 4.32 16 25 C 0.52 15.72 7.69 84.88 0.65 16.37 16 26 O -0.61 -22.86 17.93 -5.53 -0.10 -22.96 16 27 C -0.28 -9.35 10.00 22.33 0.22 -9.13 16 28 C 0.00 0.02 9.01 22.42 0.20 0.23 16 29 C -0.22 -4.80 5.53 -20.02 -0.11 -4.92 16 30 C -0.19 -9.60 9.34 23.01 0.21 -9.39 16 31 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 32 H 0.11 5.59 6.17 -2.91 -0.02 5.58 16 33 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 34 H 0.14 3.73 6.38 -2.91 -0.02 3.71 16 35 H 0.41 8.10 6.62 -92.71 -0.61 7.49 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.09 0.53 8.10 -2.39 -0.02 0.51 16 38 H 0.12 -0.19 8.14 -2.39 -0.02 -0.21 16 39 H 0.07 0.39 8.11 -2.38 -0.02 0.37 16 40 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.12 -0.07 8.14 -2.38 -0.02 -0.09 16 42 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 43 H 0.12 4.45 4.50 -2.91 -0.01 4.44 16 44 H 0.09 4.63 7.64 -2.91 -0.02 4.61 16 Total: -1.00 -78.38 360.69 1.71 -76.67 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: -0.34 Total: 30.72 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: 3.68 Total: -24.85 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -3.51 Total: -74.76 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: -0.15 Total: -48.40 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Total: -78.38 1.71 -76.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051064576.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.865 kcal (2) G-P(sol) polarization free energy of solvation -78.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds