Wall clock time and date at job start Tue Mar 31 2020 22:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46849 * 2 1 4 4 C 1.38360 * 119.84998 * 90.00378 * 3 2 1 5 5 C 1.37960 * 120.14605 * 179.97438 * 4 3 2 6 6 C 1.39578 * 119.84872 * 0.02562 * 5 4 3 7 7 C 1.47849 * 120.13681 * 179.97438 * 6 5 4 8 8 O 1.21551 * 120.00461 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99419 * 180.02562 * 7 6 5 10 10 N 1.40103 * 119.99921 * 179.97438 * 9 7 6 11 11 C 1.34771 * 119.99917 * 179.97438 * 10 9 7 12 12 O 1.21551 * 120.00219 * 0.02562 * 11 10 9 13 13 C 1.47890 * 119.99974 * 179.97438 * 11 10 9 14 14 C 1.39921 * 120.02467 * 359.97438 * 13 11 10 15 15 C 1.38328 * 120.36067 * 180.02562 * 14 13 11 16 16 C 1.37755 * 120.41072 * 359.97438 * 15 14 13 17 17 C 1.40744 * 120.03695 * 359.97438 * 16 15 14 18 18 C 1.41440 * 120.17575 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99720 * 24.41420 * 18 17 16 20 20 C 1.39937 * 120.00148 * 204.40860 * 18 17 16 21 21 N 1.30828 * 120.00202 * 17.85017 * 20 18 17 22 22 Si 1.86804 * 120.00094 * 197.84477 * 20 18 17 23 23 H 1.48503 * 109.46837 * 90.00406 * 22 20 18 24 24 H 1.48497 * 109.47376 * 210.00134 * 22 20 18 25 25 H 1.48500 * 109.46917 * 330.00618 * 22 20 18 26 26 C 1.38995 * 120.02459 * 180.02562 * 13 11 10 27 27 C 1.39574 * 119.71456 * 0.25513 * 6 5 4 28 28 C 1.37963 * 119.84833 * 359.48910 * 27 6 5 29 29 H 1.09000 * 109.46771 * 299.99528 * 1 2 3 30 30 H 1.09002 * 109.47041 * 59.99363 * 1 2 3 31 31 H 1.08998 * 109.47229 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46771 * 240.00472 * 2 1 3 33 33 H 1.08988 * 109.46988 * 120.00518 * 2 1 3 34 34 H 1.08005 * 119.93027 * 359.97438 * 4 3 2 35 35 H 1.08000 * 120.07521 * 180.02562 * 5 4 3 36 36 H 0.97004 * 120.00016 * 359.97438 * 9 7 6 37 37 H 0.97004 * 119.99944 * 359.97438 * 10 9 7 38 38 H 1.08006 * 119.81680 * 0.02658 * 14 13 11 39 39 H 1.08002 * 119.79477 * 180.02562 * 15 14 13 40 40 H 1.07996 * 119.97894 * 179.97438 * 16 15 14 41 41 H 0.96991 * 120.00411 * 180.02562 * 21 20 18 42 42 H 1.07999 * 120.20287 * 359.70146 * 26 13 11 43 43 H 1.07992 * 120.07091 * 179.72840 * 27 6 5 44 44 H 1.07999 * 119.92268 * 180.25676 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2619 2.0701 1.2000 5 6 2.7222 3.3706 1.2072 6 6 2.9558 4.0315 0.0002 7 6 3.4485 5.4255 0.0004 8 8 3.6507 5.9986 1.0531 9 7 3.6726 6.0611 -1.1669 10 7 4.1390 7.3822 -1.1668 11 6 4.3635 8.0176 -2.3339 12 8 4.1610 7.4447 -3.3866 13 6 4.8554 9.4123 -2.3338 14 6 5.0872 10.0729 -1.1224 15 6 5.5467 11.3776 -1.1142 16 6 5.7819 12.0415 -2.2981 17 6 5.5554 11.3930 -3.5265 18 6 5.7964 12.0717 -4.7438 19 1 6.4959 12.8939 -4.7743 20 6 5.1285 11.6777 -5.9087 21 7 4.0496 10.9422 -5.8272 22 14 5.7774 12.2020 -7.5801 23 1 6.7343 11.1830 -8.0814 24 1 4.6455 12.3292 -8.5329 25 1 6.4684 13.5104 -7.4546 26 6 5.0866 10.0683 -3.5372 27 6 2.7165 3.3728 -1.2069 28 6 2.2613 2.0705 -1.1999 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8898 34 1 2.0804 1.5577 2.1333 35 1 2.9015 3.8762 2.1446 36 1 3.5109 5.6039 -2.0070 37 1 4.3003 7.8396 -0.3267 38 1 4.9065 9.5612 -0.1885 39 1 5.7230 11.8786 -0.1738 40 1 6.1402 13.0602 -2.2836 41 1 3.5869 10.6688 -6.6346 42 1 4.9128 9.5610 -4.4747 43 1 2.8911 3.8801 -2.1441 44 1 2.0797 1.5582 -2.1331 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077926204.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:47 Heat of formation + Delta-G solvation = -5.127838 kcal Electronic energy + Delta-G solvation = -26937.958025 eV Core-core repulsion = 23013.560710 eV Total energy + Delta-G solvation = -3924.397315 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.59735 -39.48196 -38.49755 -37.10701 -35.10858 -34.53936 -33.82494 -31.92951 -31.14299 -30.22239 -29.54428 -29.06156 -25.43578 -24.95122 -23.19407 -22.79229 -22.09579 -21.08969 -20.86414 -19.97998 -18.34469 -17.67070 -17.33936 -16.06003 -15.88792 -15.66094 -15.38554 -15.29268 -15.02796 -14.64885 -14.31221 -14.16104 -14.07255 -13.91506 -13.72403 -13.57077 -13.29069 -12.83915 -12.82023 -12.59653 -12.20542 -11.74601 -11.68117 -11.46791 -11.30377 -11.20823 -11.18227 -11.04975 -10.79106 -10.56177 -10.29431 -10.16663 -9.77285 -9.33943 -9.32287 -9.27869 -9.11745 -8.20188 -7.70646 -7.60133 -6.86727 -4.47928 0.52005 1.04943 1.99244 2.02090 2.61485 2.75210 3.04351 3.07643 3.10875 3.53600 3.71653 3.87200 4.06487 4.32660 4.38653 4.54783 4.58345 4.68846 4.77655 4.91623 5.01899 5.10959 5.15342 5.44984 5.48357 5.50639 5.51787 5.55605 5.67320 5.78887 5.96092 6.00040 6.03744 6.20457 6.21094 6.53608 6.61253 6.80394 6.84446 6.91750 6.98060 7.13733 7.28475 7.59465 7.65597 7.82618 7.92223 7.99373 8.09923 8.41964 8.71420 8.74154 8.76927 10.07999 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.018770 B = 0.002083 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.398721 B =13437.355829 C =14760.584107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.057 4.057 4 C -0.127 4.127 5 C -0.052 4.052 6 C -0.128 4.128 7 C 0.555 3.445 8 O -0.541 6.541 9 N -0.514 5.514 10 N -0.528 5.528 11 C 0.569 3.431 12 O -0.546 6.546 13 C -0.121 4.121 14 C -0.218 4.218 15 C -0.094 4.094 16 C -0.208 4.208 17 C 0.098 3.902 18 C -0.457 4.457 19 H 0.083 0.917 20 C 0.073 3.927 21 N -0.783 5.783 22 Si 0.912 3.088 23 H -0.266 1.266 24 H -0.277 1.277 25 H -0.261 1.261 26 C -0.087 4.087 27 C -0.082 4.082 28 C -0.124 4.124 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.130 0.870 35 H 0.138 0.862 36 H 0.429 0.571 37 H 0.432 0.568 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.285 0.715 42 H 0.136 0.864 43 H 0.129 0.871 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.219 -18.826 8.716 21.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.057 4.057 4 C -0.145 4.145 5 C -0.071 4.071 6 C -0.133 4.133 7 C 0.343 3.657 8 O -0.419 6.419 9 N -0.260 5.260 10 N -0.280 5.280 11 C 0.360 3.640 12 O -0.422 6.422 13 C -0.125 4.125 14 C -0.239 4.239 15 C -0.112 4.112 16 C -0.228 4.228 17 C 0.095 3.905 18 C -0.486 4.486 19 H 0.101 0.899 20 C -0.147 4.147 21 N -0.407 5.407 22 Si 0.736 3.264 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.185 1.185 26 C -0.107 4.107 27 C -0.100 4.100 28 C -0.142 4.142 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.148 0.852 35 H 0.156 0.844 36 H 0.272 0.728 37 H 0.276 0.724 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.096 0.904 42 H 0.154 0.846 43 H 0.147 0.853 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.417 -18.909 8.533 21.441 hybrid contribution 0.136 0.265 -0.763 0.819 sum -5.282 -18.644 7.770 20.878 Atomic orbital electron populations 1.21757 0.94333 1.01949 1.02500 1.20627 0.96466 0.92295 1.03266 1.20167 0.96157 0.96261 0.93162 1.21023 1.00913 0.94603 0.97914 1.21245 0.94424 0.93886 0.97583 1.19650 1.05716 0.93056 0.94848 1.18330 0.78510 0.86189 0.82709 1.90787 1.53026 1.67412 1.30635 1.44677 1.66155 1.05060 1.10125 1.45197 1.68767 1.02533 1.11470 1.19149 0.76407 0.87026 0.81404 1.90710 1.52890 1.67772 1.30847 1.19159 1.07334 0.90302 0.95744 1.20384 1.12170 0.96765 0.94535 1.20448 0.99714 0.94223 0.96836 1.21136 1.10369 0.98926 0.92332 1.17590 0.89467 0.90769 0.92624 1.19612 1.21836 1.15085 0.92071 0.89893 1.25986 0.93365 0.93559 1.01770 1.69781 1.12219 1.26906 1.31786 0.86244 0.79444 0.80139 0.80563 1.19109 1.20198 1.18517 1.21617 0.99157 0.94027 0.95921 1.21386 0.96610 0.94991 0.97062 1.20983 1.00628 0.94527 0.98012 0.92385 0.92345 0.92195 0.90660 0.90692 0.85232 0.84374 0.72830 0.72407 0.89005 0.88569 0.88371 0.90361 0.84629 0.85313 0.85213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.89 37.16 0.37 -0.39 16 2 C -0.09 -0.48 6.06 -27.88 -0.17 -0.65 16 3 C -0.06 -0.44 5.14 -104.53 -0.54 -0.98 16 4 C -0.13 -1.04 9.68 -39.64 -0.38 -1.42 16 5 C -0.05 -0.54 9.60 -39.18 -0.38 -0.92 16 6 C -0.13 -1.51 5.87 -104.97 -0.62 -2.13 16 7 C 0.56 8.27 7.89 -12.32 -0.10 8.17 16 8 O -0.54 -9.47 16.19 5.32 0.09 -9.38 16 9 N -0.51 -8.02 6.21 30.53 0.19 -7.83 16 10 N -0.53 -9.57 6.21 30.54 0.19 -9.38 16 11 C 0.57 12.27 7.89 -12.31 -0.10 12.17 16 12 O -0.55 -12.92 16.17 5.32 0.09 -12.83 16 13 C -0.12 -2.80 5.87 -105.04 -0.62 -3.42 16 14 C -0.22 -4.60 9.55 -38.92 -0.37 -4.97 16 15 C -0.09 -1.98 10.01 -39.73 -0.40 -2.38 16 16 C -0.21 -4.83 9.78 -38.81 -0.38 -5.21 16 17 C 0.10 2.53 5.57 -106.87 -0.60 1.94 16 18 C -0.46 -11.71 9.05 -37.73 -0.34 -12.06 16 19 H 0.08 2.02 7.91 -52.49 -0.41 1.60 16 20 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 21 N -0.78 -20.20 10.95 55.55 0.61 -19.59 16 22 Si 0.91 18.35 29.60 -169.99 -5.03 13.32 16 23 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 24 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 26 C -0.09 -2.26 8.23 -38.44 -0.32 -2.57 16 27 C -0.08 -0.80 9.54 -39.18 -0.37 -1.18 16 28 C -0.12 -1.01 9.68 -39.64 -0.38 -1.40 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.07 0.34 8.08 -51.94 -0.42 -0.08 16 34 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 35 H 0.14 1.42 7.65 -52.49 -0.40 1.02 16 36 H 0.43 6.08 6.03 -182.59 -1.10 4.98 16 37 H 0.43 7.47 6.02 -182.59 -1.10 6.37 16 38 H 0.09 1.66 6.38 -52.48 -0.33 1.33 16 39 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 40 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 41 H 0.29 6.75 8.30 -40.82 -0.34 6.41 16 42 H 0.14 3.78 5.74 -52.49 -0.30 3.47 16 43 H 0.13 1.12 6.40 -52.49 -0.34 0.79 16 44 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 378.34 15.07 5.70 5.70 Total: -1.00 -30.38 378.34 -10.87 -41.24 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -6.92 Total: 14.43 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -5.77 Total: -15.68 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.99 Total: -36.81 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: 0.17 Total: -22.21 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.38 -10.87 -41.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077926204.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.116 kcal (2) G-P(sol) polarization free energy of solvation -30.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds