Wall clock time and date at job start Tue Mar 31 2020 22:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46849 * 2 1 4 4 C 1.38360 * 119.84998 * 90.00378 * 3 2 1 5 5 C 1.37960 * 120.14605 * 179.97438 * 4 3 2 6 6 C 1.39578 * 119.84872 * 0.02562 * 5 4 3 7 7 C 1.47849 * 120.13681 * 179.97438 * 6 5 4 8 8 O 1.21551 * 120.00461 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99419 * 180.02562 * 7 6 5 10 10 N 1.40103 * 119.99921 * 179.97438 * 9 7 6 11 11 C 1.34771 * 119.99917 * 179.97438 * 10 9 7 12 12 O 1.21551 * 120.00219 * 0.02562 * 11 10 9 13 13 C 1.47890 * 119.99974 * 179.97438 * 11 10 9 14 14 C 1.39921 * 120.02467 * 359.97438 * 13 11 10 15 15 C 1.38328 * 120.36067 * 180.02562 * 14 13 11 16 16 C 1.37755 * 120.41072 * 359.97438 * 15 14 13 17 17 C 1.40744 * 120.03695 * 359.97438 * 16 15 14 18 18 C 1.41440 * 120.17575 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99720 * 24.41420 * 18 17 16 20 20 C 1.39937 * 120.00148 * 204.40860 * 18 17 16 21 21 N 1.30828 * 120.00202 * 17.85017 * 20 18 17 22 22 Si 1.86804 * 120.00094 * 197.84477 * 20 18 17 23 23 H 1.48503 * 109.46837 * 90.00406 * 22 20 18 24 24 H 1.48497 * 109.47376 * 210.00134 * 22 20 18 25 25 H 1.48500 * 109.46917 * 330.00618 * 22 20 18 26 26 C 1.38995 * 120.02459 * 180.02562 * 13 11 10 27 27 C 1.39574 * 119.71456 * 0.25513 * 6 5 4 28 28 C 1.37963 * 119.84833 * 359.48910 * 27 6 5 29 29 H 1.09000 * 109.46771 * 299.99528 * 1 2 3 30 30 H 1.09002 * 109.47041 * 59.99363 * 1 2 3 31 31 H 1.08998 * 109.47229 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46771 * 240.00472 * 2 1 3 33 33 H 1.08988 * 109.46988 * 120.00518 * 2 1 3 34 34 H 1.08005 * 119.93027 * 359.97438 * 4 3 2 35 35 H 1.08000 * 120.07521 * 180.02562 * 5 4 3 36 36 H 0.97004 * 120.00016 * 359.97438 * 9 7 6 37 37 H 0.97004 * 119.99944 * 359.97438 * 10 9 7 38 38 H 1.08006 * 119.81680 * 0.02658 * 14 13 11 39 39 H 1.08002 * 119.79477 * 180.02562 * 15 14 13 40 40 H 1.07996 * 119.97894 * 179.97438 * 16 15 14 41 41 H 0.96991 * 120.00411 * 180.02562 * 21 20 18 42 42 H 1.07999 * 120.20287 * 359.70146 * 26 13 11 43 43 H 1.07992 * 120.07091 * 179.72840 * 27 6 5 44 44 H 1.07999 * 119.92268 * 180.25676 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2619 2.0701 1.2000 5 6 2.7222 3.3706 1.2072 6 6 2.9558 4.0315 0.0002 7 6 3.4485 5.4255 0.0004 8 8 3.6507 5.9986 1.0531 9 7 3.6726 6.0611 -1.1669 10 7 4.1390 7.3822 -1.1668 11 6 4.3635 8.0176 -2.3339 12 8 4.1610 7.4447 -3.3866 13 6 4.8554 9.4123 -2.3338 14 6 5.0872 10.0729 -1.1224 15 6 5.5467 11.3776 -1.1142 16 6 5.7819 12.0415 -2.2981 17 6 5.5554 11.3930 -3.5265 18 6 5.7964 12.0717 -4.7438 19 1 6.4959 12.8939 -4.7743 20 6 5.1285 11.6777 -5.9087 21 7 4.0496 10.9422 -5.8272 22 14 5.7774 12.2020 -7.5801 23 1 6.7343 11.1830 -8.0814 24 1 4.6455 12.3292 -8.5329 25 1 6.4684 13.5104 -7.4546 26 6 5.0866 10.0683 -3.5372 27 6 2.7165 3.3728 -1.2069 28 6 2.2613 2.0705 -1.1999 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8898 34 1 2.0804 1.5577 2.1333 35 1 2.9015 3.8762 2.1446 36 1 3.5109 5.6039 -2.0070 37 1 4.3003 7.8396 -0.3267 38 1 4.9065 9.5612 -0.1885 39 1 5.7230 11.8786 -0.1738 40 1 6.1402 13.0602 -2.2836 41 1 3.5869 10.6688 -6.6346 42 1 4.9128 9.5610 -4.4747 43 1 2.8911 3.8801 -2.1441 44 1 2.0797 1.5582 -2.1331 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077926204.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:46 Heat of formation + Delta-G solvation = -21.753648 kcal Electronic energy + Delta-G solvation = -26938.678974 eV Core-core repulsion = 23013.560710 eV Total energy + Delta-G solvation = -3925.118264 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.81267 -40.78734 -39.66047 -38.85378 -36.58818 -35.65034 -35.17211 -33.28800 -32.04757 -31.53868 -31.30950 -30.13313 -27.24777 -25.81776 -24.53736 -23.63951 -23.16448 -22.78237 -22.07662 -21.26651 -19.84452 -19.08153 -18.80522 -17.60132 -17.08668 -16.75421 -16.66420 -16.42519 -16.39264 -15.98471 -15.74962 -15.69925 -15.11589 -14.95159 -14.62831 -14.54757 -14.35308 -14.32907 -14.22708 -13.54477 -13.45863 -13.03094 -12.85003 -12.80043 -12.62077 -12.49821 -12.24942 -12.21578 -12.02782 -11.99101 -11.70185 -11.55563 -11.50251 -11.10106 -11.05920 -10.02654 -9.94331 -9.71123 -9.45971 -9.37776 -8.68753 -6.40125 -0.31247 0.23747 0.35162 0.61963 0.96674 1.37914 1.46396 1.52042 1.56505 1.96535 2.19073 2.72290 2.76359 2.83855 3.39880 3.64586 3.74838 3.79794 3.90054 3.94877 4.23367 4.35250 4.36134 4.51175 4.51782 4.53302 4.61768 4.83877 4.89294 4.97784 5.04172 5.10644 5.11531 5.12064 5.21848 5.27180 5.28788 5.39051 5.42263 5.45295 5.58669 5.59538 5.81155 5.87025 5.89788 6.01477 6.23344 6.36240 6.55604 6.66408 6.85477 6.89422 7.17388 8.28160 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.018770 B = 0.002083 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.398721 B =13437.355829 C =14760.584107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.049 4.049 4 C -0.125 4.125 5 C -0.061 4.061 6 C -0.152 4.152 7 C 0.559 3.441 8 O -0.570 6.570 9 N -0.514 5.514 10 N -0.517 5.517 11 C 0.570 3.430 12 O -0.574 6.574 13 C -0.129 4.129 14 C -0.204 4.204 15 C -0.092 4.092 16 C -0.212 4.212 17 C 0.068 3.932 18 C -0.492 4.492 19 H 0.086 0.914 20 C 0.030 3.970 21 N -0.822 5.822 22 Si 0.984 3.016 23 H -0.265 1.265 24 H -0.270 1.270 25 H -0.251 1.251 26 C -0.121 4.121 27 C -0.085 4.085 28 C -0.126 4.126 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.155 0.845 35 H 0.133 0.867 36 H 0.435 0.565 37 H 0.437 0.563 38 H 0.127 0.873 39 H 0.139 0.861 40 H 0.113 0.887 41 H 0.288 0.712 42 H 0.106 0.894 43 H 0.134 0.866 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.462 -20.521 10.034 23.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.050 4.050 4 C -0.142 4.142 5 C -0.080 4.080 6 C -0.156 4.156 7 C 0.349 3.651 8 O -0.449 6.449 9 N -0.262 5.262 10 N -0.266 5.266 11 C 0.360 3.640 12 O -0.453 6.453 13 C -0.134 4.134 14 C -0.224 4.224 15 C -0.110 4.110 16 C -0.232 4.232 17 C 0.066 3.934 18 C -0.521 4.521 19 H 0.105 0.895 20 C -0.186 4.186 21 N -0.448 5.448 22 Si 0.804 3.196 23 H -0.190 1.190 24 H -0.194 1.194 25 H -0.175 1.175 26 C -0.142 4.142 27 C -0.104 4.104 28 C -0.143 4.143 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.173 0.827 35 H 0.151 0.849 36 H 0.279 0.721 37 H 0.282 0.718 38 H 0.145 0.855 39 H 0.157 0.843 40 H 0.131 0.869 41 H 0.099 0.901 42 H 0.124 0.876 43 H 0.152 0.848 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.664 -20.615 9.896 23.558 hybrid contribution 0.155 0.630 -0.933 1.137 sum -5.509 -19.984 8.962 22.584 Atomic orbital electron populations 1.21759 0.94040 1.02683 1.02051 1.20701 0.96540 0.90694 1.04558 1.20539 0.94391 0.97337 0.92696 1.21302 0.99902 0.93664 0.99364 1.21337 0.94911 0.94884 0.96875 1.19516 1.08275 0.91493 0.96324 1.18919 0.77324 0.87102 0.81765 1.90757 1.54355 1.68353 1.31469 1.44876 1.66525 1.03741 1.11012 1.44853 1.67482 1.03800 1.10479 1.18872 0.76518 0.86747 0.81840 1.90687 1.54277 1.68275 1.32049 1.19388 1.06870 0.91309 0.95844 1.20817 1.09739 0.96851 0.94959 1.20900 0.98135 0.94138 0.97803 1.21437 1.09695 0.99708 0.92319 1.17944 0.90373 0.91099 0.94016 1.19882 1.22985 1.16105 0.93156 0.89550 1.26864 0.93073 0.93262 1.05353 1.69870 1.13578 1.28494 1.32809 0.85170 0.78813 0.79914 0.75666 1.19021 1.19429 1.17461 1.21427 1.02202 0.94685 0.95902 1.21509 0.96581 0.95785 0.96548 1.21290 0.99810 0.93853 0.99390 0.92743 0.92930 0.90926 0.89536 0.89345 0.82729 0.84871 0.72131 0.71799 0.85510 0.84345 0.86940 0.90113 0.87577 0.84834 0.82977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.89 71.98 0.71 -0.40 16 2 C -0.09 -0.66 6.06 29.85 0.18 -0.48 16 3 C -0.05 -0.63 5.14 -19.81 -0.10 -0.73 16 4 C -0.12 -1.76 9.68 22.23 0.22 -1.54 16 5 C -0.06 -1.21 9.60 22.53 0.22 -0.99 16 6 C -0.15 -3.50 5.87 -20.09 -0.12 -3.62 16 7 C 0.56 16.62 7.89 86.79 0.68 17.31 16 8 O -0.57 -19.90 16.19 -3.87 -0.06 -19.96 16 9 N -0.51 -16.08 6.21 -175.59 -1.09 -17.17 16 10 N -0.52 -18.66 6.21 -175.58 -1.09 -19.75 16 11 C 0.57 25.06 7.89 86.80 0.68 25.75 16 12 O -0.57 -28.20 16.17 -3.88 -0.06 -28.26 16 13 C -0.13 -6.11 5.87 -20.13 -0.12 -6.23 16 14 C -0.20 -8.26 9.55 22.70 0.22 -8.04 16 15 C -0.09 -3.67 10.01 22.18 0.22 -3.45 16 16 C -0.21 -9.76 9.78 22.77 0.22 -9.54 16 17 C 0.07 3.63 5.57 -21.32 -0.12 3.51 16 18 C -0.49 -26.15 9.05 23.47 0.21 -25.94 16 19 H 0.09 4.32 7.91 -2.91 -0.02 4.30 16 20 C 0.03 1.52 5.14 85.25 0.44 1.96 16 21 N -0.82 -44.58 10.95 21.82 0.24 -44.34 16 22 Si 0.98 38.61 29.60 68.60 2.03 40.64 16 23 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 24 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 25 H -0.25 -9.33 7.11 99.48 0.71 -8.63 16 26 C -0.12 -6.59 8.23 23.01 0.19 -6.40 16 27 C -0.09 -1.59 9.54 22.53 0.21 -1.38 16 28 C -0.13 -1.79 9.68 22.23 0.22 -1.58 16 29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.09 0.50 8.08 -2.39 -0.02 0.48 16 33 H 0.09 0.47 8.08 -2.39 -0.02 0.45 16 34 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 35 H 0.13 2.70 7.65 -2.91 -0.02 2.68 16 36 H 0.43 12.48 6.03 -213.31 -1.29 11.19 16 37 H 0.44 14.70 6.02 -213.31 -1.28 13.42 16 38 H 0.13 4.21 6.38 -2.91 -0.02 4.19 16 39 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 40 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 41 H 0.29 14.34 8.30 -92.71 -0.77 13.57 16 42 H 0.11 6.33 5.74 -2.91 -0.02 6.31 16 43 H 0.13 2.27 6.40 -2.91 -0.02 2.25 16 44 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -68.94 378.34 2.62 -66.32 By element: Atomic # 1 Polarization: 45.83 SS G_CDS: -1.51 Total: 44.32 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: 4.17 Total: -21.79 kcal Atomic # 7 Polarization: -79.32 SS G_CDS: -1.94 Total: -81.26 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: -0.13 Total: -48.23 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -68.94 2.62 -66.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077926204.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.567 kcal (2) G-P(sol) polarization free energy of solvation -68.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds