Wall clock time and date at job start Tue Mar 31 2020 20:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47321 * 272.88387 * 3 2 1 5 5 H 1.48501 * 109.47194 * 32.88966 * 3 2 1 6 6 H 1.48509 * 109.46983 * 152.88190 * 3 2 1 7 7 C 1.38813 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99777 * 339.35225 * 7 2 1 9 9 N 1.36940 * 119.99903 * 159.34992 * 7 2 1 10 10 C 1.46921 * 120.63187 * 332.62203 * 9 7 2 11 11 C 1.53190 * 108.89311 * 233.51481 * 10 9 7 12 12 C 1.53081 * 109.29209 * 305.57883 * 11 10 9 13 13 O 1.45199 * 109.43946 * 181.23715 * 12 11 10 14 14 C 1.34230 * 117.00292 * 89.79071 * 13 12 11 15 15 O 1.20828 * 119.99795 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00263 * 179.97438 * 14 13 12 17 17 C 1.52998 * 109.47180 * 180.02562 * 16 14 13 18 18 N 1.46501 * 109.47206 * 180.02562 * 17 16 14 19 19 C 1.34951 * 126.03578 * 125.00084 * 18 17 16 20 20 C 1.35312 * 107.74287 * 179.97438 * 19 18 17 21 21 N 1.48022 * 126.04049 * 179.97438 * 20 19 18 22 22 O 1.21811 * 119.99646 * 359.97438 * 21 20 19 23 23 O 1.21797 * 120.00262 * 179.97438 * 21 20 19 24 24 C 1.39868 * 107.92243 * 359.97438 * 20 19 18 25 25 N 1.30840 * 108.20215 * 359.74405 * 24 20 19 26 26 C 1.53035 * 109.65990 * 61.15476 * 12 11 10 27 27 C 1.46923 * 120.62634 * 152.59432 * 9 7 2 28 28 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.58764 * 353.37473 * 10 9 7 30 30 H 1.09004 * 109.58573 * 113.65412 * 10 9 7 31 31 H 1.08992 * 109.50042 * 65.38545 * 11 10 9 32 32 H 1.09002 * 109.50087 * 185.48915 * 11 10 9 33 33 H 1.08998 * 109.34625 * 301.12703 * 12 11 10 34 34 H 1.08997 * 109.47266 * 300.00364 * 16 14 13 35 35 H 1.09002 * 109.46662 * 60.00721 * 16 14 13 36 36 H 1.09002 * 109.47113 * 300.00537 * 17 16 14 37 37 H 1.09001 * 109.47438 * 59.99817 * 17 16 14 38 38 H 1.08003 * 126.12371 * 359.97438 * 19 18 17 39 39 H 1.08003 * 125.89939 * 179.97438 * 24 20 19 40 40 H 1.09002 * 109.49848 * 178.74812 * 26 12 11 41 41 H 1.09002 * 109.52425 * 58.66284 * 26 12 11 42 42 H 1.09004 * 109.59094 * 246.19900 * 27 9 7 43 43 H 1.09001 * 109.59077 * 6.49172 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4367 2.0817 -1.3982 5 1 1.4795 2.6343 0.7603 6 1 3.5770 1.4234 0.6382 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3289 9 7 3.3137 -1.2400 -0.4188 10 6 3.8174 -0.2583 -1.3889 11 6 4.4647 -1.0049 -2.5595 12 6 5.5293 -1.9642 -2.0210 13 8 6.1653 -2.6522 -3.1301 14 6 7.2483 -2.0697 -3.6683 15 8 7.6517 -1.0198 -3.2269 16 6 7.9616 -2.7257 -4.8224 17 6 9.1530 -1.8626 -5.2425 18 7 9.8462 -2.5001 -6.3648 19 6 10.1110 -1.9323 -7.5601 20 6 10.7625 -2.8465 -8.3156 21 7 11.2436 -2.6476 -9.7012 22 8 11.0624 -1.5813 -10.2616 23 8 11.8205 -3.5500 -10.2810 24 6 10.9010 -4.0127 -7.5558 25 7 10.3572 -3.8042 -6.3842 26 6 4.8755 -2.9898 -1.0921 27 6 4.2351 -2.2628 0.0946 28 1 -0.4850 0.8401 0.0004 29 1 2.9908 0.3501 -1.7559 30 1 4.5579 0.3822 -0.9097 31 1 3.7035 -1.5726 -3.0945 32 1 4.9277 -0.2876 -3.2372 33 1 6.2783 -1.3982 -1.4672 34 1 8.3162 -3.7104 -4.5179 35 1 7.2744 -2.8305 -5.6620 36 1 8.7988 -0.8777 -5.5468 37 1 9.8401 -1.7581 -4.4028 38 1 9.8498 -0.9281 -7.8598 39 1 11.3781 -4.9261 -7.8791 40 1 5.6320 -3.6849 -0.7278 41 1 4.1092 -3.5397 -1.6385 42 1 5.0116 -1.7874 0.6940 43 1 3.6846 -2.9757 0.7085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120882936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:10 Heat of formation + Delta-G solvation = 16.241032 kcal Electronic energy + Delta-G solvation = -28272.967309 eV Core-core repulsion = 23938.647355 eV Total energy + Delta-G solvation = -4334.319954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -42.90779 -41.80746 -40.82050 -38.09580 -36.82152 -36.39735 -35.30227 -32.86968 -31.93787 -31.44202 -30.64714 -30.53611 -27.07658 -25.77290 -24.91212 -23.03930 -22.61298 -22.15111 -21.85123 -20.79385 -19.77999 -19.53605 -18.81451 -18.16305 -17.90077 -17.27817 -17.00705 -16.95448 -16.15230 -15.89438 -15.32208 -15.14542 -14.63793 -14.32029 -14.09189 -13.96005 -13.74806 -13.40059 -13.30478 -12.86149 -12.56857 -12.53523 -12.17783 -12.03417 -11.99743 -11.86546 -11.58778 -11.45064 -11.43403 -11.01533 -10.95106 -10.83246 -10.69336 -10.54155 -10.27377 -10.18062 -10.07834 -9.83677 -9.51616 -8.75610 -7.14644 -6.05441 -3.43054 -0.18344 0.69870 0.81204 1.56082 1.72970 1.88190 2.44359 3.22988 3.39158 3.40830 3.42630 3.65671 3.81283 3.93776 4.26084 4.30400 4.41863 4.43158 4.56490 4.77215 4.83821 4.95406 4.98586 5.02635 5.19725 5.24965 5.36198 5.59220 5.61212 5.83016 5.90302 5.97641 6.01527 6.07069 6.14870 6.36437 6.39674 6.44921 6.46436 6.50543 6.76445 7.33602 7.48074 7.82570 8.21593 8.80441 9.59666 9.95039 11.10073 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026671 B = 0.001845 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.585251 B =15168.937500 C =15690.242469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.025 3.975 3 Si 0.880 3.120 4 H -0.288 1.288 5 H -0.301 1.301 6 H -0.270 1.270 7 C -0.265 4.265 8 H 0.088 0.912 9 N -0.605 5.605 10 C 0.129 3.871 11 C -0.148 4.148 12 C 0.098 3.902 13 O -0.350 6.350 14 C 0.467 3.533 15 O -0.510 6.510 16 C -0.131 4.131 17 C 0.139 3.861 18 N -0.346 5.346 19 C 0.160 3.840 20 C -0.196 4.196 21 N 0.069 4.931 22 O -0.174 6.174 23 O -0.162 6.162 24 C 0.116 3.884 25 N -0.265 5.265 26 C -0.130 4.130 27 C 0.151 3.849 28 H 0.264 0.736 29 H 0.080 0.920 30 H 0.029 0.971 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.208 0.792 39 H 0.212 0.788 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.026 0.974 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.578 -6.501 -13.556 26.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.174 4.174 3 Si 0.711 3.289 4 H -0.216 1.216 5 H -0.229 1.229 6 H -0.195 1.195 7 C -0.393 4.393 8 H 0.106 0.894 9 N -0.329 5.329 10 C 0.003 3.997 11 C -0.187 4.187 12 C 0.045 3.955 13 O -0.266 6.266 14 C 0.309 3.691 15 O -0.399 6.399 16 C -0.169 4.169 17 C 0.020 3.980 18 N -0.124 5.124 19 C 0.005 3.995 20 C -0.294 4.294 21 N 0.586 4.414 22 O -0.385 6.385 23 O -0.377 6.377 24 C -0.073 4.073 25 N -0.084 5.084 26 C -0.169 4.169 27 C 0.025 3.975 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.141 0.859 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.224 0.776 39 H 0.228 0.772 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.044 0.956 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 20.891 -6.611 -11.390 24.695 hybrid contribution 0.703 1.506 -1.154 2.023 sum 21.594 -5.104 -12.544 25.489 Atomic orbital electron populations 1.69833 1.05702 1.26696 1.52438 1.25290 0.95247 0.97605 0.99275 0.86994 0.80107 0.84731 0.77101 1.21578 1.22883 1.19522 1.18915 0.84787 0.94911 1.40655 0.89436 1.44421 1.08789 1.33271 1.46381 1.21332 0.97422 0.92043 0.88861 1.22499 0.97855 0.98280 1.00111 1.22979 0.93867 0.94103 0.84586 1.86544 1.39806 1.52245 1.48042 1.22960 0.79324 0.83465 0.83309 1.90706 1.65445 1.22662 1.61069 1.21526 0.96615 1.01677 0.97114 1.21878 0.93646 0.95569 0.86923 1.48899 1.41722 1.10482 1.11327 1.22456 0.92615 0.99647 0.84741 1.21077 1.20771 0.99650 0.87864 1.42458 0.97883 1.00083 1.00991 1.94570 1.61868 1.14413 1.67677 1.94561 1.41150 1.36167 1.65815 1.24040 0.96142 0.98156 0.88985 1.77790 1.16204 0.95041 1.19406 1.22240 0.99895 0.97452 0.97339 1.20919 0.92544 0.91638 0.92426 0.92623 0.90230 0.95316 0.90575 0.92296 0.90015 0.85894 0.86749 0.86070 0.86878 0.77560 0.77171 0.91691 0.90542 0.95573 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.97 55.49 0.78 -26.24 16 2 C 0.03 0.71 5.23 -17.43 -0.09 0.62 16 3 Si 0.88 21.75 24.34 -169.99 -4.14 17.61 16 4 H -0.29 -6.86 6.62 56.52 0.37 -6.48 16 5 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.27 -6.56 6.64 56.52 0.38 -6.19 16 7 C -0.26 -7.12 10.03 -15.06 -0.15 -7.27 16 8 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 9 N -0.61 -13.72 2.77 -172.32 -0.48 -14.20 16 10 C 0.13 2.72 4.20 -3.71 -0.02 2.71 16 11 C -0.15 -2.55 5.73 -26.59 -0.15 -2.71 16 12 C 0.10 1.51 2.41 -26.67 -0.06 1.44 16 13 O -0.35 -4.57 9.88 -39.26 -0.39 -4.96 16 14 C 0.47 5.01 7.93 36.01 0.29 5.29 16 15 O -0.51 -6.68 15.20 -18.75 -0.29 -6.96 16 16 C -0.13 -0.82 6.00 -27.88 -0.17 -0.99 16 17 C 0.14 0.68 5.80 -4.04 -0.02 0.66 16 18 N -0.35 -1.97 3.68 -61.36 -0.23 -2.20 16 19 C 0.16 0.84 11.13 -17.22 -0.19 0.65 16 20 C -0.20 -1.44 7.11 -80.38 -0.57 -2.01 16 21 N 0.07 0.68 4.45 33.75 0.15 0.83 16 22 O -0.17 -1.85 19.02 -29.46 -0.56 -2.41 16 23 O -0.16 -1.74 19.05 -29.46 -0.56 -2.30 16 24 C 0.12 0.74 11.75 -17.36 -0.20 0.54 16 25 N -0.27 -1.88 12.42 30.63 0.38 -1.50 16 26 C -0.13 -1.98 5.75 -26.61 -0.15 -2.13 16 27 C 0.15 2.75 6.52 -3.71 -0.02 2.73 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.08 1.84 4.49 -51.93 -0.23 1.61 16 30 H 0.03 0.61 7.07 -51.93 -0.37 0.24 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 1.30 7.16 -51.93 -0.37 0.93 16 34 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.12 0.41 8.03 -51.93 -0.42 -0.01 16 37 H 0.11 0.57 8.10 -51.93 -0.42 0.15 16 38 H 0.21 0.45 8.06 -52.48 -0.42 0.03 16 39 H 0.21 0.79 8.06 -52.48 -0.42 0.37 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 LS Contribution 366.98 15.07 5.53 5.53 Total: -1.00 -33.52 366.98 -6.96 -40.48 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -5.64 Total: -3.22 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -1.52 Total: -0.47 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.60 Total: -43.30 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -1.79 Total: -16.63 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.14 Total: 17.61 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.52 -6.96 -40.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120882936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.724 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds