Wall clock time and date at job start Tue Mar 31 2020 20:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47321 * 272.88387 * 3 2 1 5 5 H 1.48501 * 109.47194 * 32.88966 * 3 2 1 6 6 H 1.48509 * 109.46983 * 152.88190 * 3 2 1 7 7 C 1.38813 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99777 * 339.35225 * 7 2 1 9 9 N 1.36940 * 119.99903 * 159.34992 * 7 2 1 10 10 C 1.46921 * 120.63187 * 332.62203 * 9 7 2 11 11 C 1.53190 * 108.89311 * 233.51481 * 10 9 7 12 12 C 1.53081 * 109.29209 * 305.57883 * 11 10 9 13 13 O 1.45199 * 109.43946 * 181.23715 * 12 11 10 14 14 C 1.34230 * 117.00292 * 89.79071 * 13 12 11 15 15 O 1.20828 * 119.99795 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00263 * 179.97438 * 14 13 12 17 17 C 1.52998 * 109.47180 * 180.02562 * 16 14 13 18 18 N 1.46501 * 109.47206 * 180.02562 * 17 16 14 19 19 C 1.34951 * 126.03578 * 125.00084 * 18 17 16 20 20 C 1.35312 * 107.74287 * 179.97438 * 19 18 17 21 21 N 1.48022 * 126.04049 * 179.97438 * 20 19 18 22 22 O 1.21811 * 119.99646 * 359.97438 * 21 20 19 23 23 O 1.21797 * 120.00262 * 179.97438 * 21 20 19 24 24 C 1.39868 * 107.92243 * 359.97438 * 20 19 18 25 25 N 1.30840 * 108.20215 * 359.74405 * 24 20 19 26 26 C 1.53035 * 109.65990 * 61.15476 * 12 11 10 27 27 C 1.46923 * 120.62634 * 152.59432 * 9 7 2 28 28 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.58764 * 353.37473 * 10 9 7 30 30 H 1.09004 * 109.58573 * 113.65412 * 10 9 7 31 31 H 1.08992 * 109.50042 * 65.38545 * 11 10 9 32 32 H 1.09002 * 109.50087 * 185.48915 * 11 10 9 33 33 H 1.08998 * 109.34625 * 301.12703 * 12 11 10 34 34 H 1.08997 * 109.47266 * 300.00364 * 16 14 13 35 35 H 1.09002 * 109.46662 * 60.00721 * 16 14 13 36 36 H 1.09002 * 109.47113 * 300.00537 * 17 16 14 37 37 H 1.09001 * 109.47438 * 59.99817 * 17 16 14 38 38 H 1.08003 * 126.12371 * 359.97438 * 19 18 17 39 39 H 1.08003 * 125.89939 * 179.97438 * 24 20 19 40 40 H 1.09002 * 109.49848 * 178.74812 * 26 12 11 41 41 H 1.09002 * 109.52425 * 58.66284 * 26 12 11 42 42 H 1.09004 * 109.59094 * 246.19900 * 27 9 7 43 43 H 1.09001 * 109.59077 * 6.49172 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4367 2.0817 -1.3982 5 1 1.4795 2.6343 0.7603 6 1 3.5770 1.4234 0.6382 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3289 9 7 3.3137 -1.2400 -0.4188 10 6 3.8174 -0.2583 -1.3889 11 6 4.4647 -1.0049 -2.5595 12 6 5.5293 -1.9642 -2.0210 13 8 6.1653 -2.6522 -3.1301 14 6 7.2483 -2.0697 -3.6683 15 8 7.6517 -1.0198 -3.2269 16 6 7.9616 -2.7257 -4.8224 17 6 9.1530 -1.8626 -5.2425 18 7 9.8462 -2.5001 -6.3648 19 6 10.1110 -1.9323 -7.5601 20 6 10.7625 -2.8465 -8.3156 21 7 11.2436 -2.6476 -9.7012 22 8 11.0624 -1.5813 -10.2616 23 8 11.8205 -3.5500 -10.2810 24 6 10.9010 -4.0127 -7.5558 25 7 10.3572 -3.8042 -6.3842 26 6 4.8755 -2.9898 -1.0921 27 6 4.2351 -2.2628 0.0946 28 1 -0.4850 0.8401 0.0004 29 1 2.9908 0.3501 -1.7559 30 1 4.5579 0.3822 -0.9097 31 1 3.7035 -1.5726 -3.0945 32 1 4.9277 -0.2876 -3.2372 33 1 6.2783 -1.3982 -1.4672 34 1 8.3162 -3.7104 -4.5179 35 1 7.2744 -2.8305 -5.6620 36 1 8.7988 -0.8777 -5.5468 37 1 9.8401 -1.7581 -4.4028 38 1 9.8498 -0.9281 -7.8598 39 1 11.3781 -4.9261 -7.8791 40 1 5.6320 -3.6849 -0.7278 41 1 4.1092 -3.5397 -1.6385 42 1 5.0116 -1.7874 0.6940 43 1 3.6846 -2.9757 0.7085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120882936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:09 Heat of formation + Delta-G solvation = -4.327557 kcal Electronic energy + Delta-G solvation = -28273.859230 eV Core-core repulsion = 23938.647355 eV Total energy + Delta-G solvation = -4335.211875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.45637 -42.41381 -41.77192 -39.43153 -37.58274 -37.53635 -35.83656 -34.66178 -32.62607 -32.38446 -32.09413 -31.75639 -27.82931 -26.99714 -25.88936 -24.54198 -23.91684 -22.69679 -22.60454 -21.62374 -21.23025 -20.07746 -19.49657 -19.00022 -18.96202 -18.56257 -17.94062 -17.63402 -17.20657 -16.95672 -16.38903 -16.01600 -15.76437 -15.46102 -15.37145 -15.01248 -14.64077 -14.48910 -14.40819 -14.25848 -13.88540 -13.61133 -13.52484 -13.07257 -12.91936 -12.66450 -12.60273 -12.47435 -12.36172 -12.22613 -12.19384 -12.10777 -12.06706 -11.76918 -11.63886 -11.51653 -11.16816 -11.12393 -10.75618 -10.63772 -9.03777 -8.20009 -5.53240 -0.84204 0.16240 0.32639 1.03506 1.05240 1.19785 1.26389 1.38887 1.46836 1.62994 2.37608 2.92296 2.99127 3.23740 3.28644 3.36579 3.52154 3.60402 3.66750 3.73087 3.86228 3.99036 4.04536 4.16512 4.19588 4.35856 4.43081 4.54022 4.56590 4.67596 4.71159 4.76176 4.81211 4.86989 5.00111 5.07352 5.17155 5.27341 5.35907 5.52099 5.82508 5.90388 6.09499 6.57155 6.58049 6.85317 7.56193 7.95771 8.99401 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026671 B = 0.001845 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.585251 B =15168.937500 C =15690.242469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.033 4.033 3 Si 0.941 3.059 4 H -0.275 1.275 5 H -0.310 1.310 6 H -0.261 1.261 7 C -0.250 4.250 8 H 0.058 0.942 9 N -0.620 5.620 10 C 0.125 3.875 11 C -0.139 4.139 12 C 0.105 3.895 13 O -0.352 6.352 14 C 0.468 3.532 15 O -0.532 6.532 16 C -0.119 4.119 17 C 0.140 3.860 18 N -0.343 5.343 19 C 0.179 3.821 20 C -0.215 4.215 21 N 0.073 4.927 22 O -0.192 6.192 23 O -0.191 6.191 24 C 0.120 3.880 25 N -0.284 5.284 26 C -0.120 4.120 27 C 0.145 3.855 28 H 0.262 0.738 29 H 0.056 0.944 30 H 0.035 0.965 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.142 0.858 37 H 0.114 0.886 38 H 0.239 0.761 39 H 0.229 0.771 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.041 0.959 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.982 -6.449 -14.184 28.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.228 4.228 3 Si 0.770 3.230 4 H -0.202 1.202 5 H -0.239 1.239 6 H -0.186 1.186 7 C -0.379 4.379 8 H 0.075 0.925 9 N -0.345 5.345 10 C -0.001 4.001 11 C -0.178 4.178 12 C 0.051 3.949 13 O -0.268 6.268 14 C 0.312 3.688 15 O -0.421 6.421 16 C -0.157 4.157 17 C 0.021 3.979 18 N -0.120 5.120 19 C 0.023 3.977 20 C -0.313 4.313 21 N 0.584 4.416 22 O -0.401 6.401 23 O -0.400 6.400 24 C -0.070 4.070 25 N -0.103 5.103 26 C -0.158 4.158 27 C 0.020 3.980 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.160 0.840 37 H 0.132 0.868 38 H 0.255 0.745 39 H 0.245 0.755 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 23.371 -6.594 -12.059 27.113 hybrid contribution -0.010 1.394 -0.918 1.669 sum 23.361 -5.200 -12.978 27.225 Atomic orbital electron populations 1.69960 1.07335 1.27254 1.55390 1.25896 0.95820 1.00856 1.00263 0.85996 0.78844 0.80558 0.77566 1.20193 1.23858 1.18554 1.18873 0.86606 0.93699 1.38739 0.92460 1.44545 1.08050 1.34579 1.47316 1.21319 0.96837 0.92079 0.89827 1.22317 0.98203 0.98711 0.98609 1.22651 0.93348 0.93688 0.85246 1.86550 1.40831 1.52028 1.47418 1.23725 0.78381 0.83149 0.83573 1.90706 1.65761 1.23802 1.61877 1.21531 0.96865 1.01676 0.95593 1.21979 0.93071 0.95989 0.86857 1.48940 1.41356 1.10166 1.11535 1.22948 0.90604 1.00309 0.83820 1.21209 1.22403 1.00979 0.86727 1.42720 0.97439 0.99640 1.01822 1.94550 1.62345 1.14676 1.68576 1.94550 1.42313 1.36319 1.66829 1.24395 0.95456 0.98584 0.88516 1.77790 1.16955 0.95942 1.19651 1.22051 1.00310 0.97410 0.96071 1.21120 0.92144 0.90794 0.93966 0.92892 0.92628 0.94704 0.91479 0.90738 0.90067 0.85154 0.85196 0.84037 0.86778 0.74516 0.75498 0.88451 0.91455 0.94101 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.73 13.97 21.65 0.30 -58.43 16 2 C -0.03 -1.90 5.23 84.86 0.44 -1.45 16 3 Si 0.94 45.34 24.34 68.60 1.67 47.01 16 4 H -0.28 -12.52 6.62 99.48 0.66 -11.86 16 5 H -0.31 -15.23 7.11 99.48 0.71 -14.52 16 6 H -0.26 -12.01 6.64 99.48 0.66 -11.35 16 7 C -0.25 -13.66 10.03 84.03 0.84 -12.82 16 8 H 0.06 3.41 8.06 -2.91 -0.02 3.38 16 9 N -0.62 -27.70 2.77 -699.09 -1.94 -29.64 16 10 C 0.12 5.06 4.20 86.36 0.36 5.43 16 11 C -0.14 -4.51 5.73 30.68 0.18 -4.33 16 12 C 0.11 2.92 2.41 30.63 0.07 2.99 16 13 O -0.35 -8.02 9.88 -51.42 -0.51 -8.53 16 14 C 0.47 8.38 7.93 71.24 0.56 8.95 16 15 O -0.53 -12.15 15.20 21.96 0.33 -11.81 16 16 C -0.12 -1.03 6.00 29.85 0.18 -0.85 16 17 C 0.14 0.84 5.80 86.38 0.50 1.34 16 18 N -0.34 -2.74 3.68 -348.06 -1.28 -4.02 16 19 C 0.18 1.31 11.13 83.54 0.93 2.24 16 20 C -0.21 -2.72 7.11 36.09 0.26 -2.46 16 21 N 0.07 1.37 4.45 -47.13 -0.21 1.16 16 22 O -0.19 -3.94 19.02 18.87 0.36 -3.58 16 23 O -0.19 -4.05 19.05 18.89 0.36 -3.69 16 24 C 0.12 1.28 11.75 85.24 1.00 2.28 16 25 N -0.28 -3.27 12.42 -57.02 -0.71 -3.98 16 26 C -0.12 -3.33 5.75 30.67 0.18 -3.15 16 27 C 0.14 5.04 6.52 86.37 0.56 5.60 16 28 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.06 2.52 4.49 -2.39 -0.01 2.51 16 30 H 0.04 1.38 7.07 -2.38 -0.02 1.36 16 31 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.08 2.31 7.16 -2.39 -0.02 2.29 16 34 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.14 0.32 8.03 -2.39 -0.02 0.30 16 37 H 0.11 0.74 8.10 -2.39 -0.02 0.72 16 38 H 0.24 0.08 8.06 -2.91 -0.02 0.06 16 39 H 0.23 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.07 2.52 7.93 -2.39 -0.02 2.50 16 Total: -1.00 -74.22 366.98 5.40 -68.82 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: 0.95 Total: 2.94 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 6.07 Total: 3.75 kcal Atomic # 7 Polarization: -91.07 SS G_CDS: -3.83 Total: -94.91 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: 0.54 Total: -27.61 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.67 Total: 47.01 kcal Total: -74.22 5.40 -68.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120882936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.489 kcal (2) G-P(sol) polarization free energy of solvation -74.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds