Wall clock time and date at job start Tue Mar 31 2020 21:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42891 * 113.99920 * 2 1 4 4 C 1.53001 * 109.46967 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47135 * 65.00523 * 4 3 2 6 6 C 1.46495 * 119.99665 * 270.00017 * 5 4 3 7 7 C 1.50703 * 109.47148 * 264.99388 * 6 5 4 8 8 H 1.07999 * 119.99568 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00098 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99910 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00066 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46821 * 90.00228 * 11 9 7 13 13 H 1.48497 * 109.47229 * 210.00184 * 11 9 7 14 14 H 1.48498 * 109.47056 * 330.00477 * 11 9 7 15 15 C 1.34776 * 119.99775 * 89.99792 * 5 4 3 16 16 O 1.21358 * 120.00650 * 354.60719 * 15 5 4 17 17 C 1.49349 * 119.99458 * 174.60987 * 15 5 4 18 18 O 1.21383 * 120.00176 * 354.41818 * 17 15 5 19 19 N 1.34778 * 119.99393 * 174.69527 * 17 15 5 20 20 C 1.39828 * 119.99750 * 176.40545 * 19 17 15 21 21 C 1.38870 * 120.08436 * 145.67013 * 20 19 17 22 22 C 1.50696 * 120.02765 * 0.02562 * 21 20 19 23 23 C 1.38121 * 119.94603 * 179.79474 * 21 20 19 24 24 C 1.38301 * 120.12118 * 0.45943 * 23 21 20 25 25 C 1.38268 * 120.17014 * 359.79843 * 24 23 21 26 26 C 1.38303 * 120.04783 * 359.96773 * 25 24 23 27 27 F 1.35100 * 120.06030 * 179.97438 * 26 25 24 28 28 H 1.09008 * 109.46980 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47045 * 299.99242 * 1 2 3 30 30 H 1.09000 * 109.47267 * 59.99670 * 1 2 3 31 31 H 1.09002 * 109.46996 * 60.00491 * 3 2 1 32 32 H 1.08992 * 109.47807 * 300.00537 * 3 2 1 33 33 H 1.09000 * 109.47516 * 305.00152 * 4 3 2 34 34 H 1.09002 * 109.47152 * 185.00208 * 4 3 2 35 35 H 1.08996 * 109.47620 * 24.99249 * 6 5 4 36 36 H 1.09002 * 109.46756 * 144.99719 * 6 5 4 37 37 H 0.96999 * 119.99490 * 180.02562 * 10 9 7 38 38 H 0.96997 * 120.00323 * 356.41138 * 19 17 15 39 39 H 1.08999 * 109.47010 * 89.99841 * 22 21 20 40 40 H 1.08999 * 109.47372 * 209.99948 * 22 21 20 41 41 H 1.09001 * 109.47079 * 330.00441 * 22 21 20 42 42 H 1.08000 * 119.94035 * 180.21195 * 23 21 20 43 43 H 1.07999 * 119.91587 * 179.76910 * 24 23 21 44 44 H 1.07994 * 119.97684 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1063 -0.8925 -1.3404 7 6 5.5333 -1.2880 -1.0608 8 1 6.2700 -0.5302 -0.8384 9 6 5.8985 -2.6172 -1.0891 10 7 7.1439 -2.9624 -0.8446 11 14 4.6242 -3.9280 -1.4732 12 1 4.5839 -4.1646 -2.9387 13 1 4.9863 -5.1892 -0.7779 14 1 3.2896 -3.4720 -1.0085 15 6 4.2634 1.3330 -2.3200 16 8 4.0631 2.5292 -2.2782 17 6 4.8274 0.7130 -3.5561 18 8 5.1224 -0.4644 -3.5642 19 7 5.0140 1.4622 -4.6608 20 6 5.6115 0.9008 -5.7935 21 6 5.2129 1.3020 -7.0618 22 6 4.1358 2.3440 -7.2194 23 6 5.8079 0.7486 -8.1788 24 6 6.7933 -0.2113 -8.0365 25 6 7.1902 -0.6183 -6.7760 26 6 6.6025 -0.0653 -5.6528 27 9 6.9897 -0.4632 -4.4211 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8464 -0.8898 33 1 3.8508 0.5684 0.8427 34 1 3.9785 2.1764 0.0903 35 1 3.4492 -1.3615 -0.6080 36 1 3.8276 -1.2212 -2.3416 37 1 7.4008 -3.8975 -0.8649 38 1 4.7341 2.3909 -4.6700 39 1 4.5899 3.3345 -7.2478 40 1 3.5918 2.1670 -8.1473 41 1 3.4465 2.2844 -6.3771 42 1 5.5003 1.0632 -9.1651 43 1 7.2537 -0.6445 -8.9121 44 1 7.9603 -1.3677 -6.6686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132866336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:03 Heat of formation + Delta-G solvation = -102.094732 kcal Electronic energy + Delta-G solvation = -30839.564594 eV Core-core repulsion = 26480.193254 eV Total energy + Delta-G solvation = -4359.371340 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.18056 -40.49735 -39.25653 -37.97566 -37.34380 -35.57777 -34.29453 -32.37133 -32.34059 -30.17659 -29.45387 -27.61597 -27.08411 -26.24172 -24.72219 -22.83938 -22.42929 -21.69971 -21.03816 -19.33569 -17.66236 -17.13522 -16.96252 -16.59090 -16.39329 -16.11132 -15.86593 -15.51846 -15.26196 -14.97545 -14.59617 -14.53784 -14.32511 -13.93227 -13.68452 -13.64282 -13.48604 -13.19896 -12.96916 -12.50177 -12.11269 -12.08114 -11.99301 -11.84625 -11.71980 -11.67071 -11.60066 -11.18301 -10.99735 -10.94022 -10.60485 -10.37269 -10.13166 -10.05245 -9.53987 -9.40997 -8.70980 -8.51343 -8.37933 -8.00321 -7.84669 -5.93506 -3.88731 1.16995 1.31860 2.13111 2.79334 3.40866 3.46266 3.49263 3.60604 3.86091 3.94406 4.03550 4.44127 4.54799 4.77381 4.88543 4.93080 5.16671 5.23244 5.25824 5.34210 5.41646 5.47293 5.48508 5.49770 5.51468 5.52355 5.53545 5.71438 5.84717 5.88628 6.10071 6.14009 6.18735 6.36355 6.43316 6.52573 6.56996 6.97141 7.11390 7.21822 7.30916 7.45099 7.70211 7.93966 8.24898 8.55595 8.65489 9.06859 9.67770 11.20245 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010139 B = 0.005068 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.921652 B = 5523.682807 C = 7277.512532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.047 3.953 4 C 0.119 3.881 5 N -0.546 5.546 6 C 0.206 3.794 7 C -0.507 4.507 8 H 0.071 0.929 9 C 0.082 3.918 10 N -0.899 5.899 11 Si 0.869 3.131 12 H -0.275 1.275 13 H -0.289 1.289 14 H -0.264 1.264 15 C 0.514 3.486 16 O -0.561 6.561 17 C 0.475 3.525 18 O -0.414 6.414 19 N -0.657 5.657 20 C 0.117 3.883 21 C -0.089 4.089 22 C -0.114 4.114 23 C -0.120 4.120 24 C -0.108 4.108 25 C -0.146 4.146 26 C 0.106 3.894 27 F -0.097 7.097 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.043 0.957 36 H 0.047 0.953 37 H 0.261 0.739 38 H 0.417 0.583 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.492 9.974 -10.621 16.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.298 6.298 3 C -0.030 4.030 4 C -0.004 4.004 5 N -0.275 5.275 6 C 0.085 3.915 7 C -0.546 4.546 8 H 0.089 0.911 9 C -0.120 4.120 10 N -0.538 5.538 11 Si 0.697 3.303 12 H -0.201 1.201 13 H -0.215 1.215 14 H -0.189 1.189 15 C 0.296 3.704 16 O -0.442 6.442 17 C 0.256 3.744 18 O -0.280 6.280 19 N -0.306 5.306 20 C 0.020 3.980 21 C -0.092 4.092 22 C -0.171 4.171 23 C -0.139 4.139 24 C -0.127 4.127 25 C -0.165 4.165 26 C 0.083 3.917 27 F -0.075 7.075 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.254 0.746 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.168 9.315 -10.372 16.157 hybrid contribution -0.693 -0.319 0.014 0.763 sum -8.861 8.996 -10.359 16.332 Atomic orbital electron populations 1.22698 0.81875 1.02476 0.99391 1.88031 1.18945 1.27557 1.95271 1.23012 0.94751 0.84994 1.00292 1.21563 0.91467 1.00089 0.87317 1.47838 1.60106 1.10002 1.09543 1.20272 0.98765 0.73634 0.98782 1.21061 0.92699 0.93508 1.47316 0.91112 1.24661 0.94883 0.98098 0.94379 1.69895 1.16663 1.17191 1.50019 0.86954 0.82707 0.81654 0.79030 1.20113 1.21478 1.18850 1.19672 0.79631 0.86246 0.84838 1.90644 1.55386 1.14759 1.83445 1.20414 0.81970 0.87552 0.84460 1.91061 1.41426 1.14091 1.81385 1.43187 1.60830 1.15565 1.11062 1.17580 0.94949 0.98457 0.86987 1.19515 0.98787 1.00357 0.90511 1.20742 0.96380 0.96841 1.03134 1.20801 0.97572 0.97870 0.97664 1.20900 0.97714 0.97560 0.96488 1.21102 1.02118 1.01929 0.91345 1.17695 0.94942 0.97123 0.81919 1.91783 1.88669 1.88789 1.38256 0.89876 0.94434 0.94526 0.92590 0.93046 0.88513 0.88776 0.93920 0.93569 0.92890 0.74567 0.90808 0.90897 0.91372 0.85372 0.85266 0.84530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.32 9.62 -35.23 -0.34 -6.66 16 3 C 0.05 0.71 6.28 37.16 0.23 0.94 16 4 C 0.12 2.08 5.75 -4.04 -0.02 2.05 16 5 N -0.55 -11.64 2.43 -175.61 -0.43 -12.07 16 6 C 0.21 5.05 3.59 -5.19 -0.02 5.03 16 7 C -0.51 -14.55 8.29 -34.44 -0.29 -14.84 16 8 H 0.07 2.25 8.06 -52.49 -0.42 1.82 16 9 C 0.08 2.42 5.47 -17.82 -0.10 2.32 16 10 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 11 Si 0.87 22.42 27.47 -169.99 -4.67 17.75 16 12 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 14 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 15 C 0.51 10.74 7.68 -11.63 -0.09 10.65 16 16 O -0.56 -11.29 16.13 5.49 0.09 -11.20 16 17 C 0.47 10.00 7.14 -11.63 -0.08 9.92 16 18 O -0.41 -10.19 8.58 5.47 0.05 -10.15 16 19 N -0.66 -11.19 4.74 -10.24 -0.05 -11.24 16 20 C 0.12 1.91 6.26 -83.65 -0.52 1.39 16 21 C -0.09 -1.12 5.90 -104.43 -0.62 -1.73 16 22 C -0.11 -1.07 9.47 36.00 0.34 -0.73 16 23 C -0.12 -1.32 9.69 -39.60 -0.38 -1.70 16 24 C -0.11 -1.25 10.04 -39.55 -0.40 -1.65 16 25 C -0.15 -2.17 10.02 -39.55 -0.40 -2.56 16 26 C 0.11 1.95 6.69 -39.23 -0.26 1.69 16 27 F -0.10 -2.28 13.42 2.25 0.03 -2.25 16 28 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 1.71 8.07 -51.93 -0.42 1.29 16 34 H 0.09 1.52 7.50 -51.93 -0.39 1.13 16 35 H 0.04 1.06 6.28 -51.93 -0.33 0.73 16 36 H 0.05 1.19 5.35 -51.93 -0.28 0.92 16 37 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 38 H 0.42 6.00 7.32 -40.82 -0.30 5.70 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 41 H 0.07 0.68 7.16 -51.93 -0.37 0.31 16 42 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 369.55 15.07 5.57 5.57 Total: -1.00 -35.49 369.55 -6.36 -41.85 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.90 Total: 3.55 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: -1.49 Total: 12.29 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.30 Total: -50.75 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.20 Total: -28.01 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.03 Total: -2.25 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.75 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.49 -6.36 -41.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132866336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.244 kcal (2) G-P(sol) polarization free energy of solvation -35.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds