Wall clock time and date at job start Tue Mar 31 2020 21:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42891 * 113.99920 * 2 1 4 4 C 1.53001 * 109.46967 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47135 * 65.00523 * 4 3 2 6 6 C 1.46495 * 119.99665 * 270.00017 * 5 4 3 7 7 C 1.50703 * 109.47148 * 264.99388 * 6 5 4 8 8 H 1.07999 * 119.99568 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00098 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99910 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00066 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46821 * 90.00228 * 11 9 7 13 13 H 1.48497 * 109.47229 * 210.00184 * 11 9 7 14 14 H 1.48498 * 109.47056 * 330.00477 * 11 9 7 15 15 C 1.34776 * 119.99775 * 89.99792 * 5 4 3 16 16 O 1.21358 * 120.00650 * 354.60719 * 15 5 4 17 17 C 1.49349 * 119.99458 * 174.60987 * 15 5 4 18 18 O 1.21383 * 120.00176 * 354.41818 * 17 15 5 19 19 N 1.34778 * 119.99393 * 174.69527 * 17 15 5 20 20 C 1.39828 * 119.99750 * 176.40545 * 19 17 15 21 21 C 1.38870 * 120.08436 * 145.67013 * 20 19 17 22 22 C 1.50696 * 120.02765 * 0.02562 * 21 20 19 23 23 C 1.38121 * 119.94603 * 179.79474 * 21 20 19 24 24 C 1.38301 * 120.12118 * 0.45943 * 23 21 20 25 25 C 1.38268 * 120.17014 * 359.79843 * 24 23 21 26 26 C 1.38303 * 120.04783 * 359.96773 * 25 24 23 27 27 F 1.35100 * 120.06030 * 179.97438 * 26 25 24 28 28 H 1.09008 * 109.46980 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47045 * 299.99242 * 1 2 3 30 30 H 1.09000 * 109.47267 * 59.99670 * 1 2 3 31 31 H 1.09002 * 109.46996 * 60.00491 * 3 2 1 32 32 H 1.08992 * 109.47807 * 300.00537 * 3 2 1 33 33 H 1.09000 * 109.47516 * 305.00152 * 4 3 2 34 34 H 1.09002 * 109.47152 * 185.00208 * 4 3 2 35 35 H 1.08996 * 109.47620 * 24.99249 * 6 5 4 36 36 H 1.09002 * 109.46756 * 144.99719 * 6 5 4 37 37 H 0.96999 * 119.99490 * 180.02562 * 10 9 7 38 38 H 0.96997 * 120.00323 * 356.41138 * 19 17 15 39 39 H 1.08999 * 109.47010 * 89.99841 * 22 21 20 40 40 H 1.08999 * 109.47372 * 209.99948 * 22 21 20 41 41 H 1.09001 * 109.47079 * 330.00441 * 22 21 20 42 42 H 1.08000 * 119.94035 * 180.21195 * 23 21 20 43 43 H 1.07999 * 119.91587 * 179.76910 * 24 23 21 44 44 H 1.07994 * 119.97684 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1063 -0.8925 -1.3404 7 6 5.5333 -1.2880 -1.0608 8 1 6.2700 -0.5302 -0.8384 9 6 5.8985 -2.6172 -1.0891 10 7 7.1439 -2.9624 -0.8446 11 14 4.6242 -3.9280 -1.4732 12 1 4.5839 -4.1646 -2.9387 13 1 4.9863 -5.1892 -0.7779 14 1 3.2896 -3.4720 -1.0085 15 6 4.2634 1.3330 -2.3200 16 8 4.0631 2.5292 -2.2782 17 6 4.8274 0.7130 -3.5561 18 8 5.1224 -0.4644 -3.5642 19 7 5.0140 1.4622 -4.6608 20 6 5.6115 0.9008 -5.7935 21 6 5.2129 1.3020 -7.0618 22 6 4.1358 2.3440 -7.2194 23 6 5.8079 0.7486 -8.1788 24 6 6.7933 -0.2113 -8.0365 25 6 7.1902 -0.6183 -6.7760 26 6 6.6025 -0.0653 -5.6528 27 9 6.9897 -0.4632 -4.4211 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8464 -0.8898 33 1 3.8508 0.5684 0.8427 34 1 3.9785 2.1764 0.0903 35 1 3.4492 -1.3615 -0.6080 36 1 3.8276 -1.2212 -2.3416 37 1 7.4008 -3.8975 -0.8649 38 1 4.7341 2.3909 -4.6700 39 1 4.5899 3.3345 -7.2478 40 1 3.5918 2.1670 -8.1473 41 1 3.4465 2.2844 -6.3771 42 1 5.5003 1.0632 -9.1651 43 1 7.2537 -0.6445 -8.9121 44 1 7.9603 -1.3677 -6.6686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132866336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:02 Heat of formation + Delta-G solvation = -127.488835 kcal Electronic energy + Delta-G solvation = -30840.665765 eV Core-core repulsion = 26480.193254 eV Total energy + Delta-G solvation = -4360.472510 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.69403 -42.02984 -40.55700 -39.31731 -38.69303 -37.17045 -35.73107 -34.54630 -33.36104 -31.69548 -30.66576 -29.52188 -28.04027 -27.31882 -26.14602 -24.43198 -24.10712 -22.83338 -22.33770 -20.83789 -19.15121 -19.06271 -18.66259 -17.97755 -17.66443 -17.50633 -17.10896 -16.95073 -16.82374 -16.42708 -16.03986 -15.88134 -15.76161 -15.54621 -15.12049 -14.84350 -14.73031 -14.49709 -14.36998 -14.08087 -13.87324 -13.54663 -13.22835 -13.06980 -12.92996 -12.82245 -12.67943 -12.66745 -12.58098 -12.27968 -12.22449 -12.07845 -11.95779 -11.67066 -11.43984 -10.74602 -10.65157 -10.29694 -9.67013 -9.59380 -9.18314 -8.23552 -6.22338 -0.01892 0.20684 0.59147 1.28925 1.35958 1.37039 1.44432 2.16700 2.37323 2.47183 2.63217 2.89102 3.14878 3.22583 3.45872 3.78674 3.94583 4.06717 4.14141 4.17703 4.32436 4.35005 4.45160 4.49324 4.52613 4.57524 4.65859 4.75572 4.82465 4.83001 4.87429 4.94180 4.99853 5.08089 5.24084 5.31319 5.38385 5.41795 5.47242 5.52897 5.95124 6.00891 6.08190 6.26123 6.38048 6.71174 6.72340 7.01716 7.37517 8.94193 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010139 B = 0.005068 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.921652 B = 5523.682807 C = 7277.512532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.415 6.415 3 C 0.056 3.944 4 C 0.110 3.890 5 N -0.554 5.554 6 C 0.227 3.773 7 C -0.497 4.497 8 H 0.023 0.977 9 C 0.022 3.978 10 N -0.947 5.947 11 Si 0.934 3.066 12 H -0.282 1.282 13 H -0.279 1.279 14 H -0.240 1.240 15 C 0.511 3.489 16 O -0.553 6.553 17 C 0.469 3.531 18 O -0.459 6.459 19 N -0.639 5.639 20 C 0.087 3.913 21 C -0.080 4.080 22 C -0.114 4.114 23 C -0.106 4.106 24 C -0.091 4.091 25 C -0.161 4.161 26 C 0.053 3.947 27 F -0.142 7.142 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.048 0.952 36 H 0.039 0.961 37 H 0.262 0.738 38 H 0.428 0.572 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.057 0.943 42 H 0.177 0.823 43 H 0.170 0.830 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.240 11.253 -13.315 20.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.334 6.334 3 C -0.021 4.021 4 C -0.012 4.012 5 N -0.283 5.283 6 C 0.105 3.895 7 C -0.536 4.536 8 H 0.042 0.958 9 C -0.175 4.175 10 N -0.589 5.589 11 Si 0.758 3.242 12 H -0.208 1.208 13 H -0.205 1.205 14 H -0.163 1.163 15 C 0.293 3.707 16 O -0.434 6.434 17 C 0.251 3.749 18 O -0.329 6.329 19 N -0.289 5.289 20 C -0.008 4.008 21 C -0.082 4.082 22 C -0.171 4.171 23 C -0.124 4.124 24 C -0.109 4.109 25 C -0.180 4.180 26 C 0.032 3.968 27 F -0.121 7.121 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.123 0.877 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.268 0.732 39 H 0.112 0.888 40 H 0.120 0.880 41 H 0.076 0.924 42 H 0.194 0.806 43 H 0.187 0.813 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.946 10.669 -13.080 20.118 hybrid contribution 0.221 -0.550 0.682 0.904 sum -10.725 10.119 -12.398 19.264 Atomic orbital electron populations 1.22897 0.79662 1.03451 1.00886 1.87965 1.21453 1.28429 1.95577 1.22925 0.92385 0.84902 1.01866 1.21843 0.93914 1.00077 0.85378 1.47833 1.60607 1.08852 1.11027 1.19803 0.95753 0.75830 0.98119 1.21167 0.93906 0.92456 1.46044 0.95830 1.25515 0.96895 1.00630 0.94448 1.70048 1.18980 1.17721 1.52142 0.85922 0.81069 0.78884 0.78293 1.20805 1.20465 1.16308 1.19767 0.79546 0.86395 0.84988 1.90625 1.55168 1.14153 1.83482 1.20580 0.81603 0.87369 0.85384 1.91037 1.43773 1.15861 1.82181 1.42973 1.59809 1.15665 1.10503 1.17914 0.95507 0.99340 0.88025 1.20005 0.98884 1.00195 0.89142 1.20867 0.95375 0.96664 1.04168 1.21397 0.95846 0.96081 0.99065 1.21400 0.96912 0.96612 0.96003 1.21316 1.02437 1.02349 0.91930 1.18368 0.97584 0.99643 0.81246 1.91658 1.89518 1.89677 1.41207 0.89283 0.92148 0.93744 0.88996 0.93221 0.89199 0.87700 0.93398 0.94353 0.92864 0.73233 0.88775 0.88041 0.92367 0.80604 0.81260 0.84656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 113.37 1.25 1.85 16 2 O -0.41 -13.17 9.62 -148.98 -1.43 -14.60 16 3 C 0.06 1.59 6.28 71.98 0.45 2.05 16 4 C 0.11 3.82 5.75 86.38 0.50 4.32 16 5 N -0.55 -24.18 2.43 -827.86 -2.01 -26.20 16 6 C 0.23 11.45 3.59 85.63 0.31 11.76 16 7 C -0.50 -30.06 8.29 25.60 0.21 -29.85 16 8 H 0.02 1.60 8.06 -2.91 -0.02 1.58 16 9 C 0.02 1.38 5.47 84.65 0.46 1.84 16 10 N -0.95 -62.63 13.96 21.45 0.30 -62.33 16 11 Si 0.93 47.61 27.47 68.60 1.88 49.49 16 12 H -0.28 -14.60 7.11 99.48 0.71 -13.89 16 13 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 14 H -0.24 -11.18 6.54 99.48 0.65 -10.53 16 15 C 0.51 21.89 7.68 87.24 0.67 22.56 16 16 O -0.55 -22.21 16.13 -3.27 -0.05 -22.26 16 17 C 0.47 20.68 7.14 87.24 0.62 21.31 16 18 O -0.46 -24.04 8.58 -3.35 -0.03 -24.07 16 19 N -0.64 -22.31 4.74 -304.65 -1.44 -23.75 16 20 C 0.09 2.89 6.26 38.23 0.24 3.13 16 21 C -0.08 -1.79 5.90 -19.74 -0.12 -1.91 16 22 C -0.11 -1.71 9.47 71.23 0.67 -1.03 16 23 C -0.11 -1.84 9.69 22.26 0.22 -1.62 16 24 C -0.09 -1.82 10.04 22.29 0.22 -1.60 16 25 C -0.16 -4.85 10.02 22.29 0.22 -4.63 16 26 C 0.05 2.08 6.69 22.50 0.15 2.23 16 27 F -0.14 -7.33 13.42 44.97 0.60 -6.73 16 28 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 3.22 8.07 -2.39 -0.02 3.20 16 34 H 0.10 3.37 7.50 -2.39 -0.02 3.35 16 35 H 0.05 2.38 6.28 -2.39 -0.01 2.36 16 36 H 0.04 2.04 5.35 -2.39 -0.01 2.03 16 37 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 38 H 0.43 12.28 7.32 -92.71 -0.68 11.60 16 39 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.10 0.99 8.09 -2.39 -0.02 0.97 16 41 H 0.06 1.02 7.16 -2.39 -0.02 1.00 16 42 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 43 H 0.17 2.05 8.06 -2.91 -0.02 2.02 16 44 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -84.55 369.55 4.20 -80.34 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.30 Total: 19.72 kcal Atomic # 6 Polarization: 24.30 SS G_CDS: 6.08 Total: 30.38 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -3.16 Total: -112.28 kcal Atomic # 8 Polarization: -59.42 SS G_CDS: -1.51 Total: -60.93 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 0.60 Total: -6.73 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 1.88 Total: 49.49 kcal Total: -84.55 4.20 -80.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132866336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.144 kcal (2) G-P(sol) polarization free energy of solvation -84.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds