Wall clock time and date at job start Tue Mar 31 2020 21:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42910 * 114.00067 * 2 1 4 4 C 1.52992 * 109.47229 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47219 * 64.99501 * 4 3 2 6 6 C 1.46503 * 120.00507 * 273.97135 * 5 4 3 7 7 C 1.50701 * 109.47190 * 263.64074 * 6 5 4 8 8 H 1.08001 * 120.00099 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00150 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00516 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99771 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.46808 * 90.00784 * 11 9 7 13 13 H 1.48503 * 109.47223 * 210.00212 * 11 9 7 14 14 H 1.48498 * 109.47252 * 330.00692 * 11 9 7 15 15 C 1.34774 * 119.99674 * 93.97323 * 5 4 3 16 16 O 1.21362 * 120.00329 * 354.61297 * 15 5 4 17 17 C 1.49354 * 120.00006 * 174.61554 * 15 5 4 18 18 O 1.21371 * 120.00228 * 0.23697 * 17 15 5 19 19 N 1.34785 * 120.00093 * 180.23816 * 17 15 5 20 20 C 1.39719 * 120.00037 * 184.87827 * 19 17 15 21 21 C 1.38914 * 120.06392 * 326.22691 * 20 19 17 22 22 C 1.38291 * 119.90102 * 180.02562 * 21 20 19 23 23 F 1.35093 * 119.99050 * 180.02562 * 22 21 20 24 24 C 1.38545 * 120.02451 * 0.02562 * 22 21 20 25 25 C 1.38234 * 120.12429 * 0.27394 * 24 22 21 26 26 C 1.38123 * 120.10200 * 359.45094 * 25 24 22 27 27 C 1.50700 * 120.01555 * 180.24917 * 26 25 24 28 28 H 1.08998 * 109.47035 * 59.99968 * 1 2 3 29 29 H 1.08997 * 109.46957 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46947 * 300.00222 * 1 2 3 31 31 H 1.08999 * 109.46785 * 59.99514 * 3 2 1 32 32 H 1.09001 * 109.46470 * 300.00218 * 3 2 1 33 33 H 1.09010 * 109.46891 * 304.99858 * 4 3 2 34 34 H 1.08994 * 109.47557 * 185.00026 * 4 3 2 35 35 H 1.09004 * 109.46866 * 23.63666 * 6 5 4 36 36 H 1.08998 * 109.47152 * 143.63833 * 6 5 4 37 37 H 0.96995 * 120.00285 * 180.02562 * 10 9 7 38 38 H 0.96997 * 119.99870 * 4.87773 * 19 17 15 39 39 H 1.08002 * 120.04992 * 0.04573 * 21 20 19 40 40 H 1.08001 * 119.93816 * 180.02562 * 24 22 21 41 41 H 1.08005 * 119.94823 * 179.72374 * 25 24 22 42 42 H 1.09000 * 109.47213 * 270.30043 * 27 26 25 43 43 H 1.08999 * 109.47208 * 30.29671 * 27 26 25 44 44 H 1.08997 * 109.47399 * 150.29782 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.0219 -0.8951 -1.3705 7 6 5.4223 -1.3774 -1.0925 8 1 6.2002 -0.6677 -0.8526 9 6 5.7107 -2.7246 -1.1456 10 7 6.9327 -3.1456 -0.9026 11 14 4.3654 -3.9521 -1.5614 12 1 4.3197 -4.1573 -3.0315 13 1 4.6505 -5.2455 -0.8897 14 1 3.0565 -3.4293 -1.0937 15 6 4.3381 1.3365 -2.2962 16 8 4.2077 2.5415 -2.2337 17 6 4.9004 0.7092 -3.5295 18 8 5.0269 -0.4962 -3.5937 19 7 5.2674 1.4817 -4.5712 20 6 5.6974 0.8906 -5.7619 21 6 6.4042 -0.3048 -5.7298 22 6 6.8287 -0.8866 -6.9104 23 9 7.5157 -2.0495 -6.8813 24 6 6.5496 -0.2775 -8.1230 25 6 5.8517 0.9153 -8.1558 26 6 5.4203 1.4981 -6.9802 27 6 4.6548 2.7956 -7.0186 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8514 0.5683 0.8410 34 1 3.9785 2.1765 0.0889 35 1 3.3349 -1.3397 -0.6504 36 1 3.7303 -1.1876 -2.3792 37 1 7.1356 -4.0933 -0.9403 38 1 5.2330 2.4480 -4.4942 39 1 6.6217 -0.7793 -4.7843 40 1 6.8813 -0.7333 -9.0442 41 1 5.6395 1.3900 -9.1025 42 1 5.3530 3.6311 -6.9685 43 1 4.0846 2.8538 -7.9457 44 1 3.9730 2.8405 -6.1693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132908944.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:07 Heat of formation + Delta-G solvation = -108.889482 kcal Electronic energy + Delta-G solvation = -30264.537427 eV Core-core repulsion = 25904.871445 eV Total energy + Delta-G solvation = -4359.665982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.63594 -40.77497 -39.34318 -37.96394 -37.39763 -35.60583 -34.25984 -32.44874 -32.30597 -30.26201 -29.89829 -27.68040 -26.69037 -26.23201 -24.81630 -23.13628 -22.50931 -21.75032 -21.03819 -19.41468 -18.03397 -17.16528 -17.01607 -16.66957 -16.16393 -16.01141 -15.80185 -15.47542 -15.38297 -15.25079 -14.98216 -14.70547 -14.54843 -14.03994 -13.80932 -13.66602 -13.53732 -13.35048 -13.08805 -12.54836 -12.16992 -12.13004 -12.03654 -11.99800 -11.78626 -11.72391 -11.66241 -11.29005 -11.01224 -10.96547 -10.63581 -10.42049 -10.22098 -10.10385 -9.56372 -9.48325 -8.80985 -8.57086 -8.41882 -8.08112 -7.91436 -6.01266 -3.98017 1.11067 1.29684 2.01366 2.71794 3.38070 3.43990 3.46800 3.53724 3.80480 3.88095 3.99531 4.44306 4.49464 4.71872 4.83829 4.89014 5.07220 5.20728 5.21176 5.31316 5.34871 5.44411 5.47081 5.49114 5.49494 5.49973 5.66852 5.70324 5.80624 5.84194 6.08839 6.14654 6.15405 6.30248 6.43876 6.47763 6.51412 6.99541 7.09554 7.14712 7.28486 7.40884 7.63677 7.88197 8.15339 8.45826 8.57478 8.97781 9.59885 11.11944 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009779 B = 0.004724 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.472826 B = 5925.769112 C = 7840.539266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.047 3.953 4 C 0.117 3.883 5 N -0.545 5.545 6 C 0.201 3.799 7 C -0.515 4.515 8 H 0.071 0.929 9 C 0.081 3.919 10 N -0.898 5.898 11 Si 0.870 3.130 12 H -0.274 1.274 13 H -0.288 1.288 14 H -0.263 1.263 15 C 0.510 3.490 16 O -0.559 6.559 17 C 0.491 3.509 18 O -0.431 6.431 19 N -0.658 5.658 20 C 0.185 3.815 21 C -0.156 4.156 22 C 0.115 3.885 23 F -0.136 7.136 24 C -0.173 4.173 25 C -0.077 4.077 26 C -0.128 4.128 27 C -0.113 4.113 28 H 0.036 0.964 29 H 0.083 0.917 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.046 0.954 36 H 0.052 0.948 37 H 0.263 0.737 38 H 0.419 0.581 39 H 0.164 0.836 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.127 11.527 -9.201 16.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C -0.030 4.030 4 C -0.006 4.006 5 N -0.274 5.274 6 C 0.081 3.919 7 C -0.554 4.554 8 H 0.089 0.911 9 C -0.121 4.121 10 N -0.537 5.537 11 Si 0.697 3.303 12 H -0.199 1.199 13 H -0.214 1.214 14 H -0.187 1.187 15 C 0.293 3.707 16 O -0.440 6.440 17 C 0.273 3.727 18 O -0.298 6.298 19 N -0.307 5.307 20 C 0.089 3.911 21 C -0.177 4.177 22 C 0.095 3.905 23 F -0.115 7.115 24 C -0.193 4.193 25 C -0.095 4.095 26 C -0.131 4.131 27 C -0.169 4.169 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.256 0.744 39 H 0.181 0.819 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.918 10.826 -9.054 16.183 hybrid contribution -0.586 -0.436 -0.143 0.744 sum -8.504 10.390 -9.198 16.275 Atomic orbital electron populations 1.22700 0.81849 1.02522 0.99392 1.88042 1.18975 1.27455 1.95267 1.23007 0.94673 0.85076 1.00277 1.21584 0.91592 1.00166 0.87259 1.47866 1.59094 1.09794 1.10656 1.20357 0.98918 0.73440 0.99162 1.21100 0.93461 0.93207 1.47607 0.91127 1.24687 0.95137 0.98016 0.94281 1.69882 1.18999 1.15188 1.49634 0.86932 0.83111 0.80981 0.79251 1.19939 1.21426 1.18733 1.19692 0.79877 0.86389 0.84761 1.90657 1.56900 1.14074 1.82407 1.20404 0.80322 0.87518 0.84505 1.90940 1.46933 1.13131 1.78797 1.43196 1.65133 1.11170 1.11154 1.17232 0.95016 0.93775 0.85086 1.21524 0.99167 0.97192 0.99804 1.17498 0.95464 0.83511 0.94037 1.91515 1.76924 1.45684 1.97345 1.21055 1.03837 0.97671 0.96710 1.20578 0.97180 0.94434 0.97338 1.19714 1.02584 0.99480 0.91354 1.20715 0.99366 0.93658 1.03209 0.94500 0.89845 0.94436 0.92536 0.93123 0.88593 0.88568 0.93616 0.93055 0.92702 0.74351 0.81890 0.84952 0.84903 0.91007 0.91102 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -6.18 9.27 -35.23 -0.33 -6.51 16 3 C 0.05 0.68 6.28 37.15 0.23 0.92 16 4 C 0.12 1.96 5.83 -4.05 -0.02 1.94 16 5 N -0.54 -11.14 2.46 -175.61 -0.43 -11.57 16 6 C 0.20 4.78 3.58 -5.19 -0.02 4.76 16 7 C -0.52 -14.31 8.34 -34.44 -0.29 -14.59 16 8 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 9 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 10 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 11 Si 0.87 22.02 27.47 -169.99 -4.67 17.35 16 12 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 15 C 0.51 10.12 7.67 -11.63 -0.09 10.03 16 16 O -0.56 -10.69 16.05 5.49 0.09 -10.60 16 17 C 0.49 9.70 7.58 -11.63 -0.09 9.61 16 18 O -0.43 -9.97 9.46 5.48 0.05 -9.92 16 19 N -0.66 -10.47 4.75 -10.30 -0.05 -10.52 16 20 C 0.18 2.88 6.30 -83.76 -0.53 2.35 16 21 C -0.16 -2.80 8.69 -39.31 -0.34 -3.14 16 22 C 0.11 1.87 7.30 -39.45 -0.29 1.58 16 23 F -0.14 -2.41 17.27 2.25 0.04 -2.37 16 24 C -0.17 -2.18 10.02 -39.47 -0.40 -2.58 16 25 C -0.08 -0.84 9.69 -39.62 -0.38 -1.23 16 26 C -0.13 -1.57 5.90 -104.41 -0.62 -2.19 16 27 C -0.11 -1.03 9.47 36.01 0.34 -0.68 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.63 8.10 -51.92 -0.42 1.21 16 34 H 0.10 1.48 7.38 -51.93 -0.38 1.09 16 35 H 0.05 1.10 5.96 -51.93 -0.31 0.79 16 36 H 0.05 1.28 5.27 -51.93 -0.27 1.01 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.42 5.64 7.28 -40.82 -0.30 5.34 16 39 H 0.16 3.51 6.11 -52.49 -0.32 3.19 16 40 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 44 H 0.07 0.66 7.15 -51.93 -0.37 0.29 16 LS Contribution 371.23 15.07 5.59 5.59 Total: -1.00 -33.40 371.23 -6.17 -39.57 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -5.77 Total: 5.33 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: -1.47 Total: 10.52 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 0.29 Total: -48.95 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.19 Total: -27.04 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.40 -6.17 -39.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132908944.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.324 kcal (2) G-P(sol) polarization free energy of solvation -33.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds