Wall clock time and date at job start Tue Mar 31 2020 21:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42910 * 114.00067 * 2 1 4 4 C 1.52992 * 109.47229 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47219 * 64.99501 * 4 3 2 6 6 C 1.46503 * 120.00507 * 273.97135 * 5 4 3 7 7 C 1.50701 * 109.47190 * 263.64074 * 6 5 4 8 8 H 1.08001 * 120.00099 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00150 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00516 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99771 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.46808 * 90.00784 * 11 9 7 13 13 H 1.48503 * 109.47223 * 210.00212 * 11 9 7 14 14 H 1.48498 * 109.47252 * 330.00692 * 11 9 7 15 15 C 1.34774 * 119.99674 * 93.97323 * 5 4 3 16 16 O 1.21362 * 120.00329 * 354.61297 * 15 5 4 17 17 C 1.49354 * 120.00006 * 174.61554 * 15 5 4 18 18 O 1.21371 * 120.00228 * 0.23697 * 17 15 5 19 19 N 1.34785 * 120.00093 * 180.23816 * 17 15 5 20 20 C 1.39719 * 120.00037 * 184.87827 * 19 17 15 21 21 C 1.38914 * 120.06392 * 326.22691 * 20 19 17 22 22 C 1.38291 * 119.90102 * 180.02562 * 21 20 19 23 23 F 1.35093 * 119.99050 * 180.02562 * 22 21 20 24 24 C 1.38545 * 120.02451 * 0.02562 * 22 21 20 25 25 C 1.38234 * 120.12429 * 0.27394 * 24 22 21 26 26 C 1.38123 * 120.10200 * 359.45094 * 25 24 22 27 27 C 1.50700 * 120.01555 * 180.24917 * 26 25 24 28 28 H 1.08998 * 109.47035 * 59.99968 * 1 2 3 29 29 H 1.08997 * 109.46957 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46947 * 300.00222 * 1 2 3 31 31 H 1.08999 * 109.46785 * 59.99514 * 3 2 1 32 32 H 1.09001 * 109.46470 * 300.00218 * 3 2 1 33 33 H 1.09010 * 109.46891 * 304.99858 * 4 3 2 34 34 H 1.08994 * 109.47557 * 185.00026 * 4 3 2 35 35 H 1.09004 * 109.46866 * 23.63666 * 6 5 4 36 36 H 1.08998 * 109.47152 * 143.63833 * 6 5 4 37 37 H 0.96995 * 120.00285 * 180.02562 * 10 9 7 38 38 H 0.96997 * 119.99870 * 4.87773 * 19 17 15 39 39 H 1.08002 * 120.04992 * 0.04573 * 21 20 19 40 40 H 1.08001 * 119.93816 * 180.02562 * 24 22 21 41 41 H 1.08005 * 119.94823 * 179.72374 * 25 24 22 42 42 H 1.09000 * 109.47213 * 270.30043 * 27 26 25 43 43 H 1.08999 * 109.47208 * 30.29671 * 27 26 25 44 44 H 1.08997 * 109.47399 * 150.29782 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.0219 -0.8951 -1.3705 7 6 5.4223 -1.3774 -1.0925 8 1 6.2002 -0.6677 -0.8526 9 6 5.7107 -2.7246 -1.1456 10 7 6.9327 -3.1456 -0.9026 11 14 4.3654 -3.9521 -1.5614 12 1 4.3197 -4.1573 -3.0315 13 1 4.6505 -5.2455 -0.8897 14 1 3.0565 -3.4293 -1.0937 15 6 4.3381 1.3365 -2.2962 16 8 4.2077 2.5415 -2.2337 17 6 4.9004 0.7092 -3.5295 18 8 5.0269 -0.4962 -3.5937 19 7 5.2674 1.4817 -4.5712 20 6 5.6974 0.8906 -5.7619 21 6 6.4042 -0.3048 -5.7298 22 6 6.8287 -0.8866 -6.9104 23 9 7.5157 -2.0495 -6.8813 24 6 6.5496 -0.2775 -8.1230 25 6 5.8517 0.9153 -8.1558 26 6 5.4203 1.4981 -6.9802 27 6 4.6548 2.7956 -7.0186 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8514 0.5683 0.8410 34 1 3.9785 2.1765 0.0889 35 1 3.3349 -1.3397 -0.6504 36 1 3.7303 -1.1876 -2.3792 37 1 7.1356 -4.0933 -0.9403 38 1 5.2330 2.4480 -4.4942 39 1 6.6217 -0.7793 -4.7843 40 1 6.8813 -0.7333 -9.0442 41 1 5.6395 1.3900 -9.1025 42 1 5.3530 3.6311 -6.9685 43 1 4.0846 2.8538 -7.9457 44 1 3.9730 2.8405 -6.1693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132908944.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:06 Heat of formation + Delta-G solvation = -132.092972 kcal Electronic energy + Delta-G solvation = -30265.543606 eV Core-core repulsion = 25904.871445 eV Total energy + Delta-G solvation = -4360.672161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.93913 -42.23085 -40.68118 -39.26483 -38.70571 -37.14738 -35.67176 -34.57848 -33.32243 -31.71107 -31.12399 -29.54299 -27.69694 -27.26082 -26.18176 -24.47404 -24.33186 -22.97131 -22.27836 -20.87507 -19.38537 -19.14898 -18.64006 -18.07074 -17.51929 -17.18443 -17.02239 -16.97661 -16.64516 -16.62067 -16.28221 -16.06762 -15.92597 -15.79511 -15.15845 -14.98256 -14.69152 -14.49599 -14.37771 -14.35483 -13.90119 -13.53086 -13.26531 -13.07429 -12.91781 -12.87153 -12.81172 -12.65917 -12.62265 -12.37129 -12.19185 -12.05892 -11.96557 -11.69192 -11.48697 -10.77954 -10.64428 -10.28968 -9.75053 -9.64556 -9.19700 -8.27486 -6.27011 -0.09495 0.15050 0.54153 1.27688 1.35057 1.36962 1.44193 2.11613 2.35373 2.44581 2.57391 2.90189 3.11589 3.18624 3.40760 3.77815 3.89425 4.04892 4.07578 4.15291 4.20723 4.36046 4.39816 4.50506 4.53117 4.58132 4.72901 4.77506 4.84320 4.86645 4.89354 4.95639 5.01188 5.02800 5.20002 5.26556 5.30384 5.36575 5.45173 5.50825 5.91640 5.99723 6.07141 6.26420 6.37116 6.68699 6.69642 6.97391 7.34231 8.89460 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009779 B = 0.004724 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.472826 B = 5925.769112 C = 7840.539266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.415 6.415 3 C 0.055 3.945 4 C 0.109 3.891 5 N -0.554 5.554 6 C 0.221 3.779 7 C -0.503 4.503 8 H 0.028 0.972 9 C 0.023 3.977 10 N -0.947 5.947 11 Si 0.931 3.069 12 H -0.282 1.282 13 H -0.281 1.281 14 H -0.238 1.238 15 C 0.509 3.491 16 O -0.549 6.549 17 C 0.486 3.514 18 O -0.476 6.476 19 N -0.639 5.639 20 C 0.160 3.840 21 C -0.186 4.186 22 C 0.082 3.918 23 F -0.155 7.155 24 C -0.155 4.155 25 C -0.061 4.061 26 C -0.111 4.111 27 C -0.113 4.113 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.050 0.950 36 H 0.044 0.956 37 H 0.263 0.737 38 H 0.431 0.569 39 H 0.112 0.888 40 H 0.164 0.836 41 H 0.185 0.815 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.800 13.890 -11.559 21.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.334 6.334 3 C -0.022 4.022 4 C -0.013 4.013 5 N -0.283 5.283 6 C 0.100 3.900 7 C -0.542 4.542 8 H 0.047 0.953 9 C -0.175 4.175 10 N -0.588 5.588 11 Si 0.756 3.244 12 H -0.208 1.208 13 H -0.206 1.206 14 H -0.161 1.161 15 C 0.292 3.708 16 O -0.430 6.430 17 C 0.268 3.732 18 O -0.347 6.347 19 N -0.288 5.288 20 C 0.065 3.935 21 C -0.207 4.207 22 C 0.063 3.937 23 F -0.134 7.134 24 C -0.174 4.174 25 C -0.079 4.079 26 C -0.113 4.113 27 C -0.170 4.170 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.271 0.729 39 H 0.130 0.870 40 H 0.182 0.818 41 H 0.202 0.798 42 H 0.111 0.889 43 H 0.118 0.882 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.614 13.267 -11.415 20.469 hybrid contribution 0.302 -0.989 0.496 1.147 sum -10.312 12.278 -10.918 19.398 Atomic orbital electron populations 1.22889 0.79733 1.03392 1.00894 1.87974 1.21393 1.28483 1.95575 1.22949 0.92471 0.84892 1.01890 1.21860 0.93884 1.00254 0.85307 1.47849 1.59715 1.08569 1.12172 1.19888 0.95968 0.75643 0.98515 1.21247 0.94525 0.92409 1.45998 0.95345 1.25512 0.97280 1.00187 0.94505 1.70028 1.21293 1.15556 1.51966 0.85952 0.81332 0.78772 0.78351 1.20821 1.20638 1.16144 1.19751 0.79752 0.86523 0.84822 1.90642 1.56584 1.13413 1.82395 1.20573 0.80094 0.87295 0.85231 1.90933 1.49177 1.14859 1.79685 1.42998 1.63777 1.11408 1.10630 1.17432 0.96198 0.93778 0.86104 1.21258 1.01926 0.98947 0.98594 1.17845 0.97014 0.83743 0.95114 1.91457 1.77569 1.46856 1.97481 1.21456 1.02269 0.97692 0.95981 1.21184 0.94791 0.93180 0.98783 1.20170 1.01023 1.00102 0.90031 1.20853 0.99529 0.92105 1.04478 0.93708 0.89420 0.92145 0.88991 0.93178 0.89364 0.87246 0.93232 0.93797 0.92770 0.72896 0.86969 0.81828 0.79774 0.88881 0.88163 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.41 -12.86 9.27 -148.98 -1.38 -14.24 16 3 C 0.06 1.49 6.28 71.98 0.45 1.94 16 4 C 0.11 3.59 5.83 86.38 0.50 4.09 16 5 N -0.55 -23.00 2.46 -827.85 -2.03 -25.04 16 6 C 0.22 10.80 3.58 85.63 0.31 11.11 16 7 C -0.50 -29.44 8.34 25.60 0.21 -29.23 16 8 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 9 C 0.02 1.37 5.47 84.65 0.46 1.84 16 10 N -0.95 -61.50 13.96 21.44 0.30 -61.20 16 11 Si 0.93 46.93 27.47 68.60 1.88 48.82 16 12 H -0.28 -14.52 7.11 99.48 0.71 -13.81 16 13 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 14 H -0.24 -10.96 6.54 99.48 0.65 -10.31 16 15 C 0.51 20.49 7.67 87.24 0.67 21.16 16 16 O -0.55 -20.60 16.05 -3.29 -0.05 -20.65 16 17 C 0.49 20.05 7.58 87.24 0.66 20.71 16 18 O -0.48 -23.57 9.46 -3.31 -0.03 -23.60 16 19 N -0.64 -20.64 4.75 -304.85 -1.45 -22.09 16 20 C 0.16 5.00 6.30 38.21 0.24 5.24 16 21 C -0.19 -7.16 8.69 22.44 0.19 -6.96 16 22 C 0.08 2.77 7.30 22.36 0.16 2.93 16 23 F -0.15 -5.83 17.27 44.97 0.78 -5.05 16 24 C -0.15 -3.51 10.02 22.34 0.22 -3.29 16 25 C -0.06 -1.07 9.69 22.24 0.22 -0.85 16 26 C -0.11 -2.37 5.90 -19.73 -0.12 -2.49 16 27 C -0.11 -1.55 9.47 71.24 0.67 -0.87 16 28 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.09 3.02 8.10 -2.38 -0.02 3.00 16 34 H 0.11 3.27 7.38 -2.39 -0.02 3.25 16 35 H 0.05 2.40 5.96 -2.38 -0.01 2.38 16 36 H 0.04 2.26 5.27 -2.39 -0.01 2.24 16 37 H 0.26 16.15 8.31 -92.71 -0.77 15.37 16 38 H 0.43 11.30 7.28 -92.71 -0.67 10.62 16 39 H 0.11 5.46 6.11 -2.91 -0.02 5.44 16 40 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 41 H 0.19 1.46 8.06 -2.91 -0.02 1.44 16 42 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.10 0.86 8.09 -2.39 -0.02 0.85 16 44 H 0.06 0.96 7.15 -2.39 -0.02 0.95 16 Total: -1.00 -79.68 371.23 4.44 -75.25 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.31 Total: 20.66 kcal Atomic # 6 Polarization: 21.04 SS G_CDS: 6.11 Total: 27.15 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -3.18 Total: -108.33 kcal Atomic # 8 Polarization: -57.03 SS G_CDS: -1.47 Total: -58.50 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 0.78 Total: -5.05 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.88 Total: 48.82 kcal Total: -79.68 4.44 -75.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132908944.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.847 kcal (2) G-P(sol) polarization free energy of solvation -79.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds