Wall clock time and date at job start Tue Mar 31 2020 21:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 113.99946 * 2 1 4 4 C 1.52994 * 109.47538 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46926 * 64.99937 * 4 3 2 6 6 C 1.46501 * 120.00082 * 269.99813 * 5 4 3 7 7 C 1.50698 * 109.47493 * 263.65528 * 6 5 4 8 8 H 1.08000 * 120.00096 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99698 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00446 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99544 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47512 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47251 * 120.00048 * 11 9 7 14 14 H 1.48511 * 109.47093 * 239.99807 * 11 9 7 15 15 C 1.34777 * 120.00092 * 90.00468 * 5 4 3 16 16 O 1.21363 * 119.99847 * 354.62069 * 15 5 4 17 17 C 1.49350 * 120.00373 * 174.61982 * 15 5 4 18 18 O 1.21382 * 119.99692 * 0.23298 * 17 15 5 19 19 N 1.34775 * 120.00049 * 180.22964 * 17 15 5 20 20 C 1.39824 * 119.99970 * 184.87697 * 19 17 15 21 21 C 1.38885 * 120.08332 * 326.45172 * 20 19 17 22 22 C 1.38122 * 119.94563 * 179.97438 * 21 20 19 23 23 C 1.50696 * 119.93453 * 179.97438 * 22 21 20 24 24 C 1.38297 * 120.12067 * 359.72381 * 22 21 20 25 25 C 1.38274 * 120.17042 * 0.54858 * 24 22 21 26 26 C 1.38309 * 120.04796 * 359.45134 * 25 24 22 27 27 F 1.35097 * 120.05511 * 180.24757 * 26 25 24 28 28 H 1.09003 * 109.47587 * 299.99659 * 1 2 3 29 29 H 1.09000 * 109.47679 * 60.00139 * 1 2 3 30 30 H 1.09010 * 109.47066 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47091 * 59.99742 * 3 2 1 32 32 H 1.09003 * 109.47258 * 300.00550 * 3 2 1 33 33 H 1.09000 * 109.47025 * 305.00508 * 4 3 2 34 34 H 1.08998 * 109.47847 * 185.00081 * 4 3 2 35 35 H 1.08993 * 109.47048 * 23.66071 * 6 5 4 36 36 H 1.09006 * 109.46806 * 143.65603 * 6 5 4 37 37 H 0.96995 * 119.99766 * 179.97438 * 10 9 7 38 38 H 0.96991 * 120.00089 * 4.87916 * 19 17 15 39 39 H 1.07993 * 120.02335 * 359.95053 * 21 20 19 40 40 H 1.09001 * 109.47063 * 90.00065 * 23 22 21 41 41 H 1.09004 * 109.46662 * 209.99838 * 23 22 21 42 42 H 1.08998 * 109.47505 * 329.99949 * 23 22 21 43 43 H 1.07999 * 119.91694 * 180.27382 * 24 22 21 44 44 H 1.07998 * 119.97726 * 179.72653 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5353 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.1063 -0.8924 -1.3403 7 6 5.5401 -1.2852 -1.0932 8 1 6.2807 -0.5259 -0.8903 9 6 5.9064 -2.6140 -1.1272 10 7 5.0046 -3.5387 -1.3748 11 14 7.6835 -3.1009 -0.8203 12 1 8.4940 -1.8826 -0.5669 13 1 7.7541 -3.9976 0.3613 14 1 8.2155 -3.8097 -2.0120 15 6 4.2633 1.3330 -2.3200 16 8 4.0632 2.5293 -2.2781 17 6 4.8271 0.7130 -3.5562 18 8 5.0232 -0.4841 -3.5995 19 7 5.1181 1.4827 -4.6236 20 6 5.5493 0.8914 -5.8150 21 6 6.3227 -0.2617 -5.7799 22 6 6.7467 -0.8436 -6.9586 23 6 7.5863 -2.0944 -6.9202 24 6 6.3978 -0.2834 -8.1740 25 6 5.6328 0.8677 -8.2145 26 6 5.2043 1.4563 -7.0386 27 9 4.4527 2.5782 -7.0782 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0278 -0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8507 0.5686 0.8426 34 1 3.9784 2.1766 0.0902 35 1 3.4671 -1.3607 -0.5918 36 1 3.8049 -1.2237 -2.3341 37 1 5.2625 -4.4734 -1.3991 38 1 5.0284 2.4467 -4.5653 39 1 6.5926 -0.7026 -4.8318 40 1 6.9360 -2.9691 -6.9348 41 1 8.2448 -2.1167 -7.7886 42 1 8.1853 -2.1022 -6.0097 43 1 6.7274 -0.7437 -9.0937 44 1 5.3658 1.3050 -9.1653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132929539.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:11 Heat of formation + Delta-G solvation = -114.235234 kcal Electronic energy + Delta-G solvation = -30200.373518 eV Core-core repulsion = 25840.475727 eV Total energy + Delta-G solvation = -4359.897791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.79320 -40.55280 -39.17420 -37.92582 -37.27681 -35.55826 -34.29678 -32.51659 -32.07259 -30.07634 -29.73177 -27.06461 -26.56725 -26.15126 -24.75531 -23.11404 -22.84198 -21.85799 -20.83737 -19.33024 -17.77914 -17.15135 -16.80419 -16.61045 -16.34289 -16.12016 -15.77553 -15.52100 -15.35505 -15.01530 -14.63949 -14.46629 -14.35592 -14.10716 -13.86062 -13.55560 -13.40493 -13.33017 -12.99249 -12.31764 -12.08867 -12.03028 -11.88829 -11.75666 -11.72811 -11.60562 -11.57257 -11.20599 -10.93472 -10.88788 -10.74168 -10.44157 -10.16574 -9.96494 -9.63798 -9.42667 -8.75238 -8.55610 -8.23326 -8.00205 -7.82070 -5.98239 -4.00070 1.13198 1.30944 2.11845 2.81232 3.30101 3.37872 3.41264 3.60323 3.88445 4.01591 4.11869 4.29844 4.47485 4.76642 4.86624 5.01370 5.20876 5.32157 5.32766 5.38045 5.43682 5.51656 5.56736 5.59504 5.60531 5.75133 5.79464 5.82339 5.91390 5.95373 6.13498 6.18307 6.22881 6.36033 6.48506 6.67873 6.70418 7.07157 7.33005 7.42488 7.51748 7.57415 7.91442 8.11905 8.23702 8.31934 8.64060 9.00058 9.61280 11.10514 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008724 B = 0.004883 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.824555 B = 5732.911290 C = 8062.105541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.047 3.953 4 C 0.119 3.881 5 N -0.549 5.549 6 C 0.232 3.768 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.070 3.930 10 N -0.887 5.887 11 Si 0.889 3.111 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.507 3.493 16 O -0.563 6.563 17 C 0.490 3.510 18 O -0.424 6.424 19 N -0.661 5.661 20 C 0.133 3.867 21 C -0.098 4.098 22 C -0.073 4.073 23 C -0.114 4.114 24 C -0.116 4.116 25 C -0.134 4.134 26 C 0.057 3.943 27 F -0.140 7.140 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.260 0.740 38 H 0.418 0.582 39 H 0.159 0.841 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.130 0.870 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.508 7.658 -7.998 11.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C -0.031 4.031 4 C -0.005 4.005 5 N -0.279 5.279 6 C 0.113 3.887 7 C -0.553 4.553 8 H 0.071 0.929 9 C -0.132 4.132 10 N -0.526 5.526 11 Si 0.717 3.283 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.210 1.210 15 C 0.289 3.711 16 O -0.445 6.445 17 C 0.271 3.729 18 O -0.291 6.291 19 N -0.309 5.309 20 C 0.037 3.963 21 C -0.118 4.118 22 C -0.074 4.074 23 C -0.170 4.170 24 C -0.135 4.135 25 C -0.153 4.153 26 C 0.035 3.965 27 F -0.119 7.119 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.255 0.745 39 H 0.176 0.824 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.148 0.852 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.463 6.999 -7.879 10.639 hybrid contribution 0.493 0.566 0.170 0.770 sum -0.970 7.565 -7.709 10.844 Atomic orbital electron populations 1.22690 0.81945 1.02537 0.99203 1.88062 1.18856 1.27214 1.95220 1.22984 0.94776 0.85178 1.00120 1.21537 0.91642 0.99786 0.87508 1.48228 1.59489 1.11041 1.09112 1.19980 0.97556 0.70817 1.00322 1.21259 0.93664 0.92181 1.48154 0.92922 1.24777 0.96966 0.96321 0.95174 1.69939 1.33031 1.00576 1.49067 0.86596 0.85451 0.78465 0.77772 1.20006 1.21103 1.20966 1.19701 0.80244 0.86279 0.84865 1.90654 1.55729 1.14905 1.83232 1.20432 0.80539 0.87429 0.84469 1.90984 1.45069 1.13184 1.79877 1.43130 1.66437 1.11517 1.09833 1.17754 0.97797 0.96541 0.84236 1.21394 0.95386 0.94604 1.00442 1.19902 0.98052 0.97166 0.92316 1.20793 0.98760 0.94615 1.02866 1.20827 0.99362 0.95586 0.97736 1.20869 1.00600 0.97338 0.96474 1.17479 0.98384 0.87411 0.93188 1.91464 1.74063 1.49144 1.97232 0.94630 0.94606 0.89752 0.92831 0.93148 0.88726 0.89112 0.93590 0.92083 0.93001 0.74487 0.82375 0.90626 0.91584 0.91035 0.85240 0.84692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.38 -6.62 9.65 -35.23 -0.34 -6.96 16 3 C 0.05 0.74 6.28 37.15 0.23 0.98 16 4 C 0.12 2.10 5.74 -4.05 -0.02 2.07 16 5 N -0.55 -11.73 2.44 -175.61 -0.43 -12.16 16 6 C 0.23 5.81 4.52 -5.19 -0.02 5.79 16 7 C -0.51 -13.82 7.78 -34.44 -0.27 -14.09 16 8 H 0.05 1.43 7.81 -52.49 -0.41 1.02 16 9 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 10 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 11 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 C 0.51 10.62 7.67 -11.63 -0.09 10.54 16 16 O -0.56 -11.62 16.12 5.49 0.09 -11.53 16 17 C 0.49 10.12 7.58 -11.63 -0.09 10.03 16 18 O -0.42 -9.96 9.45 5.47 0.05 -9.91 16 19 N -0.66 -11.56 5.22 -10.24 -0.05 -11.62 16 20 C 0.13 2.21 6.33 -83.65 -0.53 1.68 16 21 C -0.10 -1.65 8.36 -39.38 -0.33 -1.98 16 22 C -0.07 -1.02 5.88 -104.64 -0.62 -1.64 16 23 C -0.11 -1.36 10.01 36.00 0.36 -1.00 16 24 C -0.12 -1.36 9.69 -39.55 -0.38 -1.75 16 25 C -0.13 -1.62 10.02 -39.54 -0.40 -2.02 16 26 C 0.06 0.84 7.31 -39.23 -0.29 0.55 16 27 F -0.14 -2.07 16.94 2.25 0.04 -2.03 16 28 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 1.05 8.14 -51.92 -0.42 0.62 16 31 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 1.67 8.07 -51.93 -0.42 1.25 16 34 H 0.09 1.47 7.50 -51.93 -0.39 1.08 16 35 H 0.05 1.23 7.25 -51.93 -0.38 0.85 16 36 H 0.06 1.68 5.84 -51.93 -0.30 1.38 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.42 6.63 8.11 -40.82 -0.33 6.30 16 39 H 0.16 3.08 6.10 -52.49 -0.32 2.76 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 42 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 43 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 377.75 15.07 5.69 5.69 Total: -1.00 -31.36 377.75 -6.57 -37.93 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.91 Total: 6.64 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: -1.42 Total: 12.54 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 0.25 Total: -48.62 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.20 Total: -28.40 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.36 -6.57 -37.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132929539.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.310 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds