Wall clock time and date at job start Tue Mar 31 2020 21:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99682 * 2 1 4 4 C 1.53004 * 109.47250 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47341 * 64.99327 * 4 3 2 6 6 C 1.46494 * 120.00094 * 273.99865 * 5 4 3 7 7 C 1.50701 * 109.46934 * 263.65088 * 6 5 4 8 8 H 1.07997 * 120.00145 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99647 * 180.02562 * 7 6 5 10 10 N 1.31508 * 120.00043 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99701 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47133 * 59.99944 * 11 9 7 13 13 H 1.48498 * 109.47045 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47052 * 300.00105 * 11 9 7 15 15 C 1.34782 * 119.99571 * 93.99714 * 5 4 3 16 16 O 1.21364 * 119.99956 * 354.61477 * 15 5 4 17 17 C 1.49338 * 119.99760 * 174.62016 * 15 5 4 18 18 O 1.21380 * 120.00344 * 0.29474 * 17 15 5 19 19 N 1.34776 * 119.99743 * 180.30021 * 17 15 5 20 20 C 1.39808 * 119.99810 * 184.85346 * 19 17 15 21 21 C 1.38936 * 120.05188 * 324.59146 * 20 19 17 22 22 C 1.38072 * 119.95172 * 180.02562 * 21 20 19 23 23 C 1.38516 * 120.04536 * 359.97438 * 22 21 20 24 24 F 1.35106 * 119.94341 * 180.28342 * 23 22 21 25 25 C 1.38470 * 120.10853 * 359.97438 * 23 22 21 26 26 C 1.50695 * 119.97643 * 180.02562 * 25 23 22 27 27 C 1.38120 * 120.04435 * 0.02562 * 25 23 22 28 28 H 1.09004 * 109.46981 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47217 * 299.99877 * 1 2 3 30 30 H 1.09005 * 109.47224 * 60.00440 * 1 2 3 31 31 H 1.08998 * 109.47325 * 60.00037 * 3 2 1 32 32 H 1.09002 * 109.47375 * 299.99453 * 3 2 1 33 33 H 1.09001 * 109.47009 * 304.99948 * 4 3 2 34 34 H 1.08995 * 109.47201 * 185.00151 * 4 3 2 35 35 H 1.08996 * 109.47314 * 23.65598 * 6 5 4 36 36 H 1.09010 * 109.46686 * 143.65559 * 6 5 4 37 37 H 0.97006 * 120.00005 * 180.02562 * 10 9 7 38 38 H 0.96999 * 120.00005 * 4.85430 * 19 17 15 39 39 H 1.08000 * 120.02716 * 0.04448 * 21 20 19 40 40 H 1.07997 * 119.97803 * 179.97438 * 22 21 20 41 41 H 1.08996 * 109.47065 * 90.00797 * 26 25 23 42 42 H 1.09002 * 109.46786 * 210.00447 * 26 25 23 43 43 H 1.09002 * 109.47169 * 329.99998 * 26 25 23 44 44 H 1.07997 * 120.01881 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0215 -0.8950 -1.3706 7 6 5.4216 -1.3778 -1.0921 8 1 6.1995 -0.6685 -0.8509 9 6 5.7095 -2.7252 -1.1451 10 7 4.7625 -3.5889 -1.4392 11 14 7.4449 -3.3237 -0.7992 12 1 7.8408 -2.9261 0.5757 13 1 7.4916 -4.8030 -0.9200 14 1 8.3820 -2.7177 -1.7789 15 6 4.3387 1.3366 -2.2961 16 8 4.2085 2.5416 -2.2335 17 6 4.9008 0.7093 -3.5292 18 8 5.0260 -0.4963 -3.5940 19 7 5.2694 1.4819 -4.5702 20 6 5.7002 0.8905 -5.7616 21 6 6.4352 -0.2880 -5.7273 22 6 6.8600 -0.8700 -6.9051 23 6 6.5534 -0.2800 -8.1203 24 9 6.9652 -0.8543 -9.2718 25 6 5.8200 0.8939 -8.1570 26 6 5.4875 1.5329 -9.4807 27 6 5.3929 1.4796 -6.9813 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5684 0.8409 34 1 3.9784 2.1766 0.0889 35 1 3.3340 -1.3394 -0.6509 36 1 3.7303 -1.1873 -2.3796 37 1 4.9649 -4.5369 -1.4762 38 1 5.2358 2.4482 -4.4929 39 1 6.6740 -0.7487 -4.7801 40 1 7.4318 -1.7858 -6.8790 41 1 4.5372 1.1421 -9.8443 42 1 5.4116 2.6129 -9.3539 43 1 6.2733 1.3061 -10.2012 44 1 4.8213 2.3955 -7.0104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132939896.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:53 Heat of formation + Delta-G solvation = -114.203775 kcal Electronic energy + Delta-G solvation = -29778.830668 eV Core-core repulsion = 25418.934241 eV Total energy + Delta-G solvation = -4359.896427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.77434 -40.60413 -39.19688 -37.87177 -37.28075 -35.49728 -34.18951 -32.60213 -32.50676 -30.00127 -29.41568 -27.08383 -26.95131 -26.13112 -24.65443 -22.86490 -22.68401 -22.43320 -20.70533 -19.32518 -17.56083 -17.40207 -16.81875 -16.61369 -16.35762 -16.18867 -15.74162 -15.57787 -15.42023 -15.05043 -14.67459 -14.50849 -14.26597 -14.11472 -13.58720 -13.40947 -13.38274 -13.27783 -13.01524 -12.68685 -12.30177 -12.18822 -12.06957 -11.99512 -11.76421 -11.60803 -11.53620 -11.05251 -10.94428 -10.88231 -10.74204 -10.43826 -9.98897 -9.91989 -9.66014 -9.43486 -8.89790 -8.67081 -8.23491 -7.95130 -7.80029 -5.97234 -3.99240 1.13316 1.28971 2.09969 2.82685 3.33711 3.38580 3.40455 3.58634 3.89076 4.02366 4.11905 4.35657 4.48457 4.69532 4.80476 4.95934 5.13710 5.31501 5.36268 5.39113 5.42376 5.44913 5.47559 5.54953 5.58271 5.58899 5.72690 5.73221 5.82021 5.90711 5.98018 6.22090 6.23026 6.36846 6.43745 6.56702 6.69942 7.05988 7.34218 7.42274 7.52376 7.58808 7.91959 8.12023 8.24253 8.32532 8.63363 9.00238 9.62080 11.11468 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009699 B = 0.003969 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.212808 B = 7052.738096 C = 8982.181489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.048 3.952 4 C 0.117 3.883 5 N -0.549 5.549 6 C 0.232 3.768 7 C -0.516 4.516 8 H 0.051 0.949 9 C 0.071 3.929 10 N -0.888 5.888 11 Si 0.890 3.110 12 H -0.279 1.279 13 H -0.287 1.287 14 H -0.278 1.278 15 C 0.506 3.494 16 O -0.566 6.566 17 C 0.488 3.512 18 O -0.425 6.425 19 N -0.663 5.663 20 C 0.153 3.847 21 C -0.096 4.096 22 C -0.127 4.127 23 C 0.072 3.928 24 F -0.143 7.143 25 C -0.105 4.105 26 C -0.110 4.110 27 C -0.123 4.123 28 H 0.084 0.916 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.262 0.738 38 H 0.416 0.584 39 H 0.156 0.844 40 H 0.138 0.862 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.786 11.010 -7.540 13.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C -0.030 4.030 4 C -0.006 4.006 5 N -0.279 5.279 6 C 0.113 3.887 7 C -0.555 4.555 8 H 0.069 0.931 9 C -0.132 4.132 10 N -0.526 5.526 11 Si 0.718 3.282 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.204 1.204 15 C 0.289 3.711 16 O -0.448 6.448 17 C 0.269 3.731 18 O -0.291 6.291 19 N -0.312 5.312 20 C 0.058 3.942 21 C -0.117 4.117 22 C -0.146 4.146 23 C 0.052 3.948 24 F -0.122 7.122 25 C -0.106 4.106 26 C -0.167 4.167 27 C -0.144 4.144 28 H 0.103 0.897 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.253 0.747 39 H 0.174 0.826 40 H 0.156 0.844 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.736 10.272 -7.491 13.004 hybrid contribution 0.800 0.063 0.099 0.809 sum -1.935 10.335 -7.392 12.853 Atomic orbital electron populations 1.22691 0.81970 1.02572 0.99153 1.88084 1.18836 1.27094 1.95202 1.22973 0.94733 0.85249 1.00027 1.21546 0.91702 0.99839 0.87544 1.48254 1.58492 1.10840 1.10296 1.19986 0.97829 0.70555 1.00283 1.21179 0.94630 0.92087 1.47592 0.93053 1.24769 0.96707 0.96560 0.95123 1.69914 1.32236 1.02175 1.48288 0.86705 0.85239 0.77621 0.78641 1.20434 1.21281 1.20387 1.19745 0.80146 0.86369 0.84880 1.90645 1.57373 1.14276 1.82491 1.20425 0.80515 0.87613 0.84540 1.91004 1.46598 1.12743 1.78793 1.43228 1.65615 1.11048 1.11306 1.17739 0.95972 0.95149 0.85342 1.21376 0.95397 0.95196 0.99689 1.21068 1.01895 1.01117 0.90551 1.17510 1.01423 0.94189 0.81715 1.91447 1.88827 1.84085 1.47850 1.19597 0.99729 0.94965 0.96325 1.20688 1.02295 1.00508 0.93192 1.20622 1.02110 1.02022 0.89638 0.89730 0.94656 0.94622 0.92830 0.93275 0.88856 0.88958 0.93362 0.92130 0.92876 0.74651 0.82622 0.84443 0.90886 0.91068 0.91275 0.84810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.50 9.27 -35.23 -0.33 -6.83 16 3 C 0.05 0.73 6.28 37.16 0.23 0.97 16 4 C 0.12 2.02 5.83 -4.04 -0.02 2.00 16 5 N -0.55 -11.47 2.46 -175.61 -0.43 -11.91 16 6 C 0.23 5.76 4.51 -5.20 -0.02 5.73 16 7 C -0.52 -13.86 7.79 -34.44 -0.27 -14.13 16 8 H 0.05 1.39 7.81 -52.49 -0.41 0.98 16 9 C 0.07 1.96 5.46 -17.82 -0.10 1.86 16 10 N -0.89 -25.72 13.29 55.43 0.74 -24.99 16 11 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 C 0.51 10.19 7.67 -11.64 -0.09 10.10 16 16 O -0.57 -11.08 16.05 5.48 0.09 -10.99 16 17 C 0.49 9.62 7.57 -11.64 -0.09 9.53 16 18 O -0.42 -9.80 9.56 5.47 0.05 -9.75 16 19 N -0.66 -10.45 5.32 -10.29 -0.05 -10.50 16 20 C 0.15 2.33 6.29 -83.72 -0.53 1.81 16 21 C -0.10 -1.61 8.69 -39.38 -0.34 -1.95 16 22 C -0.13 -1.89 10.02 -39.54 -0.40 -2.29 16 23 C 0.07 1.00 7.24 -39.39 -0.29 0.71 16 24 F -0.14 -1.99 16.47 2.25 0.04 -1.95 16 25 C -0.10 -1.30 5.88 -104.58 -0.62 -1.91 16 26 C -0.11 -1.02 9.83 36.00 0.35 -0.67 16 27 C -0.12 -1.54 9.62 -39.38 -0.38 -1.92 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.09 1.62 8.10 -51.93 -0.42 1.20 16 34 H 0.09 1.45 7.38 -51.93 -0.38 1.07 16 35 H 0.05 1.28 6.90 -51.93 -0.36 0.92 16 36 H 0.06 1.66 5.84 -51.92 -0.30 1.35 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.42 5.55 8.30 -40.82 -0.34 5.21 16 39 H 0.16 3.00 6.24 -52.49 -0.33 2.68 16 40 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 43 H 0.07 0.63 7.64 -51.93 -0.40 0.23 16 44 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 376.54 15.07 5.67 5.67 Total: -1.00 -31.44 376.54 -6.56 -38.00 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.88 Total: 5.43 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: -1.43 Total: 11.39 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.25 Total: -47.40 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.19 Total: -27.58 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.44 -6.56 -38.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132939896.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.208 kcal (2) G-P(sol) polarization free energy of solvation -31.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds