Wall clock time and date at job start Tue Mar 31 2020 21:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99682 * 2 1 4 4 C 1.53004 * 109.47250 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47341 * 64.99327 * 4 3 2 6 6 C 1.46494 * 120.00094 * 273.99865 * 5 4 3 7 7 C 1.50701 * 109.46934 * 263.65088 * 6 5 4 8 8 H 1.07997 * 120.00145 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99647 * 180.02562 * 7 6 5 10 10 N 1.31508 * 120.00043 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99701 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47133 * 59.99944 * 11 9 7 13 13 H 1.48498 * 109.47045 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47052 * 300.00105 * 11 9 7 15 15 C 1.34782 * 119.99571 * 93.99714 * 5 4 3 16 16 O 1.21364 * 119.99956 * 354.61477 * 15 5 4 17 17 C 1.49338 * 119.99760 * 174.62016 * 15 5 4 18 18 O 1.21380 * 120.00344 * 0.29474 * 17 15 5 19 19 N 1.34776 * 119.99743 * 180.30021 * 17 15 5 20 20 C 1.39808 * 119.99810 * 184.85346 * 19 17 15 21 21 C 1.38936 * 120.05188 * 324.59146 * 20 19 17 22 22 C 1.38072 * 119.95172 * 180.02562 * 21 20 19 23 23 C 1.38516 * 120.04536 * 359.97438 * 22 21 20 24 24 F 1.35106 * 119.94341 * 180.28342 * 23 22 21 25 25 C 1.38470 * 120.10853 * 359.97438 * 23 22 21 26 26 C 1.50695 * 119.97643 * 180.02562 * 25 23 22 27 27 C 1.38120 * 120.04435 * 0.02562 * 25 23 22 28 28 H 1.09004 * 109.46981 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47217 * 299.99877 * 1 2 3 30 30 H 1.09005 * 109.47224 * 60.00440 * 1 2 3 31 31 H 1.08998 * 109.47325 * 60.00037 * 3 2 1 32 32 H 1.09002 * 109.47375 * 299.99453 * 3 2 1 33 33 H 1.09001 * 109.47009 * 304.99948 * 4 3 2 34 34 H 1.08995 * 109.47201 * 185.00151 * 4 3 2 35 35 H 1.08996 * 109.47314 * 23.65598 * 6 5 4 36 36 H 1.09010 * 109.46686 * 143.65559 * 6 5 4 37 37 H 0.97006 * 120.00005 * 180.02562 * 10 9 7 38 38 H 0.96999 * 120.00005 * 4.85430 * 19 17 15 39 39 H 1.08000 * 120.02716 * 0.04448 * 21 20 19 40 40 H 1.07997 * 119.97803 * 179.97438 * 22 21 20 41 41 H 1.08996 * 109.47065 * 90.00797 * 26 25 23 42 42 H 1.09002 * 109.46786 * 210.00447 * 26 25 23 43 43 H 1.09002 * 109.47169 * 329.99998 * 26 25 23 44 44 H 1.07997 * 120.01881 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0215 -0.8950 -1.3706 7 6 5.4216 -1.3778 -1.0921 8 1 6.1995 -0.6685 -0.8509 9 6 5.7095 -2.7252 -1.1451 10 7 4.7625 -3.5889 -1.4392 11 14 7.4449 -3.3237 -0.7992 12 1 7.8408 -2.9261 0.5757 13 1 7.4916 -4.8030 -0.9200 14 1 8.3820 -2.7177 -1.7789 15 6 4.3387 1.3366 -2.2961 16 8 4.2085 2.5416 -2.2335 17 6 4.9008 0.7093 -3.5292 18 8 5.0260 -0.4963 -3.5940 19 7 5.2694 1.4819 -4.5702 20 6 5.7002 0.8905 -5.7616 21 6 6.4352 -0.2880 -5.7273 22 6 6.8600 -0.8700 -6.9051 23 6 6.5534 -0.2800 -8.1203 24 9 6.9652 -0.8543 -9.2718 25 6 5.8200 0.8939 -8.1570 26 6 5.4875 1.5329 -9.4807 27 6 5.3929 1.4796 -6.9813 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5684 0.8409 34 1 3.9784 2.1766 0.0889 35 1 3.3340 -1.3394 -0.6509 36 1 3.7303 -1.1873 -2.3796 37 1 4.9649 -4.5369 -1.4762 38 1 5.2358 2.4482 -4.4929 39 1 6.6740 -0.7487 -4.7801 40 1 7.4318 -1.7858 -6.8790 41 1 4.5372 1.1421 -9.8443 42 1 5.4116 2.6129 -9.3539 43 1 6.2733 1.3061 -10.2012 44 1 4.8213 2.3955 -7.0104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132939896.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:52 Heat of formation + Delta-G solvation = -134.206650 kcal Electronic energy + Delta-G solvation = -29779.698058 eV Core-core repulsion = 25418.934241 eV Total energy + Delta-G solvation = -4360.763817 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.88917 -42.07793 -40.55069 -39.20199 -38.64794 -37.06079 -35.62191 -34.53084 -33.65042 -31.46049 -30.62459 -28.95938 -27.92796 -27.29950 -26.10832 -24.76910 -23.86203 -23.69900 -21.98637 -20.77340 -19.06964 -18.58794 -18.53862 -18.23253 -17.67568 -17.45842 -16.99017 -16.87447 -16.76555 -16.64539 -16.25127 -15.89763 -15.85470 -15.24608 -14.93390 -14.81989 -14.58231 -14.29583 -14.19279 -14.05304 -13.86034 -13.57196 -13.36691 -13.22696 -13.06408 -12.92078 -12.82003 -12.78351 -12.65637 -12.35028 -12.11422 -12.02958 -11.82267 -11.67463 -11.21943 -10.63825 -10.58021 -10.12967 -9.89055 -9.60600 -9.09409 -8.09044 -6.17179 -0.09123 0.18336 0.58250 1.38452 1.40684 1.41693 1.48246 2.19002 2.41186 2.58228 2.61738 2.94993 3.25038 3.25877 3.41312 3.70754 3.77604 4.11720 4.14489 4.19377 4.24544 4.36806 4.38837 4.52153 4.54902 4.58645 4.69138 4.80033 4.82166 4.86089 4.86414 5.02507 5.10952 5.14378 5.21930 5.26955 5.33134 5.47268 5.58342 5.82899 5.90518 6.10730 6.17839 6.27793 6.38990 6.79358 6.87851 7.10287 7.47822 8.99041 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009699 B = 0.003969 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.212808 B = 7052.738096 C = 8982.181489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.413 6.413 3 C 0.053 3.947 4 C 0.110 3.890 5 N -0.558 5.558 6 C 0.258 3.742 7 C -0.516 4.516 8 H 0.045 0.955 9 C 0.023 3.977 10 N -0.921 5.921 11 Si 0.947 3.053 12 H -0.267 1.267 13 H -0.284 1.284 14 H -0.279 1.279 15 C 0.505 3.495 16 O -0.557 6.557 17 C 0.485 3.515 18 O -0.468 6.468 19 N -0.643 5.643 20 C 0.136 3.864 21 C -0.119 4.119 22 C -0.136 4.136 23 C 0.066 3.934 24 F -0.142 7.142 25 C -0.096 4.096 26 C -0.110 4.110 27 C -0.107 4.107 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.042 0.958 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.027 0.973 36 H 0.033 0.967 37 H 0.261 0.739 38 H 0.430 0.570 39 H 0.121 0.879 40 H 0.141 0.859 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.005 13.379 -8.514 16.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C -0.024 4.024 4 C -0.012 4.012 5 N -0.287 5.287 6 C 0.138 3.862 7 C -0.555 4.555 8 H 0.064 0.936 9 C -0.177 4.177 10 N -0.561 5.561 11 Si 0.773 3.227 12 H -0.192 1.192 13 H -0.209 1.209 14 H -0.205 1.205 15 C 0.288 3.712 16 O -0.439 6.439 17 C 0.267 3.733 18 O -0.337 6.337 19 N -0.292 5.292 20 C 0.041 3.959 21 C -0.139 4.139 22 C -0.155 4.155 23 C 0.047 3.953 24 F -0.121 7.121 25 C -0.098 4.098 26 C -0.166 4.166 27 C -0.127 4.127 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.128 0.872 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.269 0.731 39 H 0.139 0.861 40 H 0.159 0.841 41 H 0.102 0.898 42 H 0.115 0.885 43 H 0.090 0.910 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.952 12.713 -8.473 15.561 hybrid contribution 0.844 -0.584 0.303 1.071 sum -2.108 12.129 -8.170 14.775 Atomic orbital electron populations 1.22863 0.79938 1.03229 1.00753 1.88031 1.21240 1.28443 1.95518 1.22963 0.93026 0.84855 1.01556 1.21809 0.93567 1.00145 0.85689 1.48171 1.59193 1.09440 1.11898 1.19349 0.96159 0.72867 0.97805 1.21378 0.95345 0.92109 1.46687 0.93631 1.25493 1.00158 0.96867 0.95136 1.70033 1.34092 1.02298 1.49716 0.85788 0.80944 0.77142 0.78800 1.19222 1.20904 1.20450 1.19831 0.80001 0.86453 0.84927 1.90633 1.57141 1.13652 1.82460 1.20497 0.80269 0.87351 0.85171 1.91006 1.48709 1.14400 1.79625 1.43011 1.64202 1.11373 1.10660 1.17907 0.96709 0.95265 0.85999 1.21136 0.97466 0.96484 0.98841 1.21091 1.02255 1.01485 0.90687 1.17637 1.01659 0.94787 0.81249 1.91450 1.88856 1.84204 1.47563 1.20017 0.97932 0.93924 0.97918 1.20806 1.02837 1.01902 0.91065 1.20932 1.01045 1.02563 0.88122 0.89699 0.92041 0.93905 0.89153 0.93602 0.89499 0.87172 0.95480 0.94886 0.92997 0.73061 0.86084 0.84140 0.89767 0.88482 0.90952 0.81211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.41 -14.31 9.27 -148.98 -1.38 -15.69 16 3 C 0.05 1.56 6.28 71.98 0.45 2.01 16 4 C 0.11 3.74 5.83 86.38 0.50 4.24 16 5 N -0.56 -23.65 2.46 -827.85 -2.03 -25.68 16 6 C 0.26 13.36 4.51 85.63 0.39 13.75 16 7 C -0.52 -28.63 7.79 25.60 0.20 -28.43 16 8 H 0.05 2.52 7.81 -2.91 -0.02 2.50 16 9 C 0.02 1.29 5.46 84.66 0.46 1.75 16 10 N -0.92 -55.26 13.29 21.45 0.28 -54.97 16 11 Si 0.95 44.98 29.54 68.60 2.03 47.00 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 14 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 15 C 0.51 20.38 7.67 87.23 0.67 21.05 16 16 O -0.56 -21.08 16.05 -3.29 -0.05 -21.14 16 17 C 0.49 19.58 7.57 87.23 0.66 20.24 16 18 O -0.47 -22.70 9.56 -3.34 -0.03 -22.73 16 19 N -0.64 -19.95 5.32 -304.81 -1.62 -21.58 16 20 C 0.14 4.07 6.29 38.19 0.24 4.31 16 21 C -0.12 -4.12 8.69 22.40 0.19 -3.92 16 22 C -0.14 -4.14 10.02 22.30 0.22 -3.91 16 23 C 0.07 1.78 7.24 22.39 0.16 1.95 16 24 F -0.14 -3.75 16.47 44.97 0.74 -3.01 16 25 C -0.10 -2.13 5.88 -19.84 -0.12 -2.25 16 26 C -0.11 -1.61 9.83 71.23 0.70 -0.91 16 27 C -0.11 -2.38 9.62 22.40 0.22 -2.17 16 28 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 3.04 8.10 -2.39 -0.02 3.02 16 34 H 0.11 3.31 7.38 -2.39 -0.02 3.29 16 35 H 0.03 1.51 6.90 -2.39 -0.02 1.50 16 36 H 0.03 1.92 5.84 -2.38 -0.01 1.90 16 37 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 38 H 0.43 10.73 8.30 -92.71 -0.77 9.96 16 39 H 0.12 5.06 6.24 -2.91 -0.02 5.04 16 40 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 41 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.10 0.97 8.08 -2.39 -0.02 0.95 16 43 H 0.07 1.06 7.64 -2.39 -0.02 1.04 16 44 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -70.39 376.54 4.40 -65.99 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.27 Total: 22.14 kcal Atomic # 6 Polarization: 23.46 SS G_CDS: 6.20 Total: 29.66 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -3.37 Total: -102.23 kcal Atomic # 8 Polarization: -58.09 SS G_CDS: -1.47 Total: -59.56 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.74 Total: -3.01 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -70.39 4.40 -65.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132939896.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.220 kcal (2) G-P(sol) polarization free energy of solvation -70.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds