Wall clock time and date at job start Tue Mar 31 2020 21:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00012 * 2 1 4 4 C 1.52999 * 109.47308 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47074 * 65.00156 * 4 3 2 6 6 C 1.46494 * 119.99927 * 273.96611 * 5 4 3 7 7 C 1.50697 * 109.47103 * 263.62864 * 6 5 4 8 8 H 1.08009 * 120.00042 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00210 * 180.02562 * 7 6 5 10 10 N 1.31509 * 119.99864 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 119.99927 * 0.02562 * 9 7 6 12 12 H 1.48494 * 109.46995 * 90.00051 * 11 9 7 13 13 H 1.48501 * 109.47243 * 209.99943 * 11 9 7 14 14 H 1.48506 * 109.47022 * 329.99938 * 11 9 7 15 15 C 1.34775 * 119.99975 * 93.96079 * 5 4 3 16 16 O 1.21364 * 119.99787 * 354.61554 * 15 5 4 17 17 C 1.49338 * 120.00136 * 174.61736 * 15 5 4 18 18 O 1.21385 * 120.00218 * 0.21350 * 17 15 5 19 19 N 1.34783 * 119.99927 * 180.21789 * 17 15 5 20 20 C 1.39823 * 119.99494 * 184.90853 * 19 17 15 21 21 C 1.38879 * 120.08818 * 326.44302 * 20 19 17 22 22 C 1.38119 * 119.94787 * 180.28499 * 21 20 19 23 23 C 1.38296 * 120.11922 * 359.46749 * 22 21 20 24 24 C 1.38272 * 120.17114 * 0.25576 * 23 22 21 25 25 C 1.50702 * 119.97486 * 179.97438 * 24 23 22 26 26 C 1.38295 * 120.04801 * 0.02617 * 24 23 22 27 27 F 1.35107 * 120.05635 * 179.97438 * 26 24 23 28 28 H 1.08990 * 109.46863 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46744 * 299.99693 * 1 2 3 30 30 H 1.09005 * 109.46811 * 59.99659 * 1 2 3 31 31 H 1.09001 * 109.47070 * 60.00028 * 3 2 1 32 32 H 1.08996 * 109.47672 * 300.00160 * 3 2 1 33 33 H 1.08997 * 109.47454 * 305.00509 * 4 3 2 34 34 H 1.09001 * 109.47666 * 184.99986 * 4 3 2 35 35 H 1.09002 * 109.47584 * 23.63098 * 6 5 4 36 36 H 1.09003 * 109.46836 * 143.63060 * 6 5 4 37 37 H 0.97007 * 119.99993 * 179.97438 * 10 9 7 38 38 H 0.96992 * 119.99882 * 4.90080 * 19 17 15 39 39 H 1.07995 * 120.02437 * 0.02818 * 21 20 19 40 40 H 1.08004 * 119.93742 * 179.74808 * 22 21 20 41 41 H 1.08000 * 119.91684 * 180.28029 * 23 22 21 42 42 H 1.08997 * 109.46907 * 90.00215 * 25 24 23 43 43 H 1.08995 * 109.47384 * 210.00512 * 25 24 23 44 44 H 1.09001 * 109.47154 * 330.00406 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0231 -0.8955 -1.3682 7 6 5.4234 -1.3776 -1.0893 8 1 6.2010 -0.6677 -0.8483 9 6 5.7120 -2.7248 -1.1417 10 7 6.9339 -3.1455 -0.8978 11 14 4.3674 -3.9525 -1.5591 12 1 4.3238 -4.1579 -3.0291 13 1 4.6517 -5.2457 -0.8868 14 1 3.0578 -3.4297 -1.0932 15 6 4.3398 1.3358 -2.2945 16 8 4.2091 2.5408 -2.2324 17 6 4.9030 0.7082 -3.5270 18 8 5.0302 -0.4972 -3.5906 19 7 5.2702 1.4805 -4.5689 20 6 5.7008 0.8885 -5.7602 21 6 6.4037 -0.3089 -5.7283 22 6 6.8328 -0.8882 -6.9065 23 6 6.5543 -0.2836 -8.1187 24 6 5.8500 0.9057 -8.1565 25 6 5.5495 1.5610 -9.4799 26 6 5.4220 1.4948 -6.9808 27 9 4.7342 2.6571 -7.0176 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.8508 0.5685 0.8426 34 1 3.9785 2.1765 0.0902 35 1 3.3357 -1.3400 -0.6484 36 1 3.7322 -1.1884 -2.3770 37 1 7.1369 -4.0934 -0.9343 38 1 5.2357 2.4467 -4.4923 39 1 6.6181 -0.7847 -4.7828 40 1 7.3828 -1.8173 -6.8812 41 1 6.8875 -0.7417 -9.0382 42 1 4.5951 1.1948 -9.8583 43 1 5.4971 2.6416 -9.3468 44 1 6.3389 1.3206 -10.1920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132982223.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:57 Heat of formation + Delta-G solvation = -109.418733 kcal Electronic energy + Delta-G solvation = -30154.210748 eV Core-core repulsion = 25794.521816 eV Total energy + Delta-G solvation = -4359.688932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.85045 -40.62387 -39.20805 -38.01253 -37.40160 -35.68579 -34.41279 -32.45874 -32.25552 -30.20831 -29.60473 -27.66981 -26.98255 -26.26840 -24.83153 -22.78214 -22.49171 -22.12181 -20.92772 -19.32700 -17.81022 -17.24778 -17.08328 -16.74149 -16.51253 -16.13690 -15.89435 -15.66526 -15.48062 -15.25363 -14.80713 -14.61651 -14.43841 -14.00885 -13.65916 -13.48824 -13.42693 -13.35444 -13.04845 -12.55591 -12.43891 -12.12913 -12.08675 -12.02087 -11.83395 -11.71187 -11.62235 -11.30864 -11.02208 -10.96002 -10.64075 -10.41378 -10.20573 -10.10335 -9.54784 -9.49167 -8.78809 -8.56364 -8.43952 -8.07638 -7.89617 -6.02847 -3.99162 1.11974 1.26173 2.03013 2.72705 3.36336 3.41748 3.45747 3.57363 3.81043 3.91251 4.00698 4.25063 4.47833 4.66144 4.82690 4.89473 5.14500 5.22409 5.31563 5.32468 5.34451 5.42341 5.45828 5.46827 5.48842 5.51562 5.70814 5.71982 5.78109 5.82870 6.02606 6.16126 6.22499 6.32117 6.48722 6.51850 6.58303 6.98682 7.08985 7.15690 7.29779 7.40896 7.62963 7.89379 8.16838 8.46520 8.58099 8.96640 9.58486 11.10355 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010390 B = 0.004303 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.312530 B = 6505.365466 C = 8183.724457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.047 3.953 4 C 0.117 3.883 5 N -0.546 5.546 6 C 0.201 3.799 7 C -0.514 4.514 8 H 0.071 0.929 9 C 0.081 3.919 10 N -0.900 5.900 11 Si 0.871 3.129 12 H -0.274 1.274 13 H -0.289 1.289 14 H -0.263 1.263 15 C 0.510 3.490 16 O -0.557 6.557 17 C 0.495 3.505 18 O -0.434 6.434 19 N -0.658 5.658 20 C 0.130 3.870 21 C -0.101 4.101 22 C -0.103 4.103 23 C -0.115 4.115 24 C -0.107 4.107 25 C -0.110 4.110 26 C 0.063 3.937 27 F -0.138 7.138 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.046 0.954 36 H 0.052 0.948 37 H 0.263 0.737 38 H 0.419 0.581 39 H 0.161 0.839 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.298 8.483 -9.942 14.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C -0.031 4.031 4 C -0.006 4.006 5 N -0.275 5.275 6 C 0.081 3.919 7 C -0.552 4.552 8 H 0.089 0.911 9 C -0.121 4.121 10 N -0.539 5.539 11 Si 0.698 3.302 12 H -0.200 1.200 13 H -0.215 1.215 14 H -0.187 1.187 15 C 0.293 3.707 16 O -0.438 6.438 17 C 0.276 3.724 18 O -0.301 6.301 19 N -0.307 5.307 20 C 0.034 3.966 21 C -0.121 4.121 22 C -0.122 4.122 23 C -0.134 4.134 24 C -0.109 4.109 25 C -0.166 4.166 26 C 0.041 3.959 27 F -0.117 7.117 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.256 0.744 39 H 0.178 0.822 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.143 7.882 -9.809 14.003 hybrid contribution -0.910 0.094 -0.112 0.921 sum -7.053 7.977 -9.921 14.553 Atomic orbital electron populations 1.22701 0.81854 1.02506 0.99407 1.88036 1.18972 1.27464 1.95270 1.23009 0.94689 0.85070 1.00298 1.21583 0.91575 1.00163 0.87244 1.47858 1.59235 1.09770 1.10681 1.20348 0.98882 0.73480 0.99156 1.21121 0.93506 0.93214 1.47354 0.91114 1.24681 0.95121 0.97975 0.94334 1.69893 1.19003 1.15126 1.49843 0.86925 0.83183 0.80935 0.79182 1.19964 1.21474 1.18747 1.19682 0.79903 0.86404 0.84729 1.90667 1.56736 1.14108 1.82310 1.20345 0.80167 0.87439 0.84411 1.90919 1.47227 1.13029 1.78940 1.43079 1.65242 1.11294 1.11040 1.17761 0.98625 0.96112 0.84086 1.21559 0.95115 0.94244 1.01178 1.21166 0.99367 1.00121 0.91560 1.20888 0.99512 0.94565 0.98454 1.19683 1.00644 0.96695 0.93833 1.20684 1.02259 1.00645 0.93062 1.17291 1.00236 0.85689 0.92673 1.91447 1.77306 1.45760 1.97169 0.89849 0.94428 0.94500 0.92539 0.93106 0.88591 0.88581 0.93635 0.93051 0.92751 0.74408 0.82166 0.84874 0.85233 0.90948 0.91332 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.28 9.27 -35.23 -0.33 -6.61 16 3 C 0.05 0.70 6.28 37.16 0.23 0.93 16 4 C 0.12 2.01 5.83 -4.04 -0.02 1.98 16 5 N -0.55 -11.34 2.46 -175.61 -0.43 -11.78 16 6 C 0.20 4.78 3.58 -5.20 -0.02 4.76 16 7 C -0.51 -14.11 8.33 -34.44 -0.29 -14.39 16 8 H 0.07 2.14 8.06 -52.48 -0.42 1.72 16 9 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 10 N -0.90 -27.10 13.96 55.43 0.77 -26.32 16 11 Si 0.87 21.58 27.47 -169.99 -4.67 16.91 16 12 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 14 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 15 C 0.51 10.46 7.67 -11.64 -0.09 10.37 16 16 O -0.56 -11.23 16.05 5.48 0.09 -11.14 16 17 C 0.49 10.06 7.58 -11.64 -0.09 9.97 16 18 O -0.43 -9.97 9.45 5.47 0.05 -9.91 16 19 N -0.66 -11.38 5.22 -10.24 -0.05 -11.43 16 20 C 0.13 2.15 6.33 -83.65 -0.53 1.62 16 21 C -0.10 -1.69 8.71 -39.39 -0.34 -2.04 16 22 C -0.10 -1.40 10.04 -39.60 -0.40 -1.80 16 23 C -0.12 -1.34 9.70 -39.55 -0.38 -1.73 16 24 C -0.11 -1.32 5.88 -104.59 -0.62 -1.94 16 25 C -0.11 -1.01 9.83 36.01 0.35 -0.66 16 26 C 0.06 0.92 7.25 -39.24 -0.28 0.63 16 27 F -0.14 -1.99 16.15 2.25 0.04 -1.96 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 1.65 8.10 -51.93 -0.42 1.23 16 34 H 0.10 1.52 7.38 -51.93 -0.38 1.13 16 35 H 0.05 1.10 5.96 -51.93 -0.31 0.79 16 36 H 0.05 1.28 5.27 -51.93 -0.27 1.00 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.42 6.54 8.12 -40.82 -0.33 6.21 16 39 H 0.16 3.17 6.09 -52.49 -0.32 2.85 16 40 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 41 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.63 7.63 -51.93 -0.40 0.23 16 44 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 LS Contribution 372.26 15.07 5.61 5.61 Total: -1.00 -32.50 372.26 -6.21 -38.70 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.83 Total: 6.50 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: -1.46 Total: 11.42 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 0.29 Total: -49.53 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.19 Total: -27.66 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.50 -6.21 -38.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132982223.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.718 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds