Wall clock time and date at job start Tue Mar 31 2020 21:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.55347 * 2 1 4 4 C 1.53298 * 109.50694 * 120.12397 * 2 1 3 5 5 N 1.47155 * 108.37808 * 172.22561 * 4 2 1 6 6 C 1.34781 * 120.97936 * 129.44168 * 5 4 2 7 7 O 1.21598 * 120.00041 * 5.22439 * 6 5 4 8 8 N 1.34774 * 119.99846 * 185.22072 * 6 5 4 9 9 C 1.40142 * 119.99884 * 184.46740 * 8 6 5 10 10 C 1.38694 * 120.07261 * 325.44365 * 9 8 6 11 11 C 1.38200 * 120.02375 * 180.02562 * 10 9 8 12 12 C 1.38553 * 120.16850 * 0.24899 * 11 10 9 13 13 F 1.35094 * 119.91991 * 179.70546 * 12 11 10 14 14 C 1.38346 * 120.14968 * 359.44989 * 12 11 10 15 15 C 1.38728 * 119.97736 * 0.57302 * 14 12 11 16 16 O 1.35780 * 120.08635 * 179.67808 * 15 14 12 17 17 C 1.34811 * 117.00072 * 354.51907 * 16 15 14 18 18 H 1.07994 * 119.99714 * 5.05000 * 17 16 15 19 19 C 1.38633 * 120.00032 * 185.04532 * 17 16 15 20 20 N 1.31575 * 120.00102 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00067 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47030 * 89.99991 * 21 19 17 23 23 H 1.48501 * 109.47434 * 210.00608 * 21 19 17 24 24 H 1.48511 * 109.46772 * 330.00393 * 21 19 17 25 25 C 1.47148 * 118.04165 * 309.71634 * 5 4 2 26 26 C 1.52884 * 108.60523 * 50.22686 * 25 5 4 27 27 O 1.42957 * 109.29645 * 307.93723 * 26 25 5 28 28 H 1.08998 * 109.46937 * 299.87835 * 1 2 3 29 29 H 1.08996 * 109.46649 * 59.87534 * 1 2 3 30 30 H 1.08993 * 109.46807 * 179.87189 * 1 2 3 31 31 H 1.08994 * 109.46832 * 180.12328 * 3 2 1 32 32 H 1.09002 * 109.46900 * 300.12477 * 3 2 1 33 33 H 1.08999 * 109.47167 * 60.12450 * 3 2 1 34 34 H 1.08998 * 109.68142 * 52.50841 * 4 2 1 35 35 H 1.08999 * 109.68447 * 291.94326 * 4 2 1 36 36 H 0.96999 * 120.00651 * 4.46730 * 8 6 5 37 37 H 1.08006 * 119.99171 * 0.02562 * 10 9 8 38 38 H 1.07997 * 119.91716 * 179.97438 * 11 10 9 39 39 H 1.08004 * 120.00745 * 180.29938 * 14 12 11 40 40 H 0.97002 * 119.99897 * 179.97438 * 20 19 17 41 41 H 1.08995 * 109.68623 * 170.00707 * 25 5 4 42 42 H 1.09004 * 109.68148 * 290.56492 * 25 5 4 43 43 H 1.09002 * 109.58277 * 187.92473 * 26 25 5 44 44 H 1.09005 * 109.40614 * 67.84271 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0422 1.4418 0.0000 4 6 2.0420 -0.7252 1.2498 5 7 3.5011 -0.8762 1.1337 6 6 4.3193 -0.5033 2.1377 7 8 3.8516 -0.1234 3.1939 8 7 5.6558 -0.5516 1.9711 9 6 6.5069 -0.2540 3.0440 10 6 6.1446 0.7116 3.9713 11 6 6.9849 1.0047 5.0287 12 6 8.1929 0.3396 5.1631 13 9 9.0132 0.6343 6.1952 14 6 8.5586 -0.6292 4.2456 15 6 7.7200 -0.9279 3.1816 16 8 8.0797 -1.8737 2.2763 17 6 9.3124 -2.4046 2.4027 18 1 9.9329 -2.1345 3.2443 19 6 9.7835 -3.2974 1.4524 20 7 9.0276 -3.6262 0.4269 21 14 11.4913 -4.0336 1.6280 22 1 11.4092 -5.2934 2.4099 23 1 12.0469 -4.3219 0.2814 24 1 12.3754 -3.0705 2.3325 25 6 4.0411 -1.4406 -0.1134 26 6 3.4313 -0.6855 -1.2947 27 8 2.0076 -0.6764 -1.1654 28 1 -0.3633 0.5119 0.8911 29 1 -0.3632 0.5158 -0.8889 30 1 -0.3633 -1.0276 -0.0023 31 1 3.1321 1.4402 -0.0022 32 1 1.6777 1.9568 -0.8889 33 1 1.6814 1.9555 0.8911 34 1 1.5757 -1.7079 1.3209 35 1 1.8031 -0.1398 2.1377 36 1 6.0288 -0.7924 1.1086 37 1 5.2054 1.2347 3.8672 38 1 6.7012 1.7571 5.7496 39 1 9.4986 -1.1495 4.3553 40 1 9.3574 -4.2506 -0.2382 41 1 5.1252 -1.3287 -0.1279 42 1 3.7795 -2.4965 -0.1820 43 1 3.7092 -1.1787 -2.2262 44 1 3.8030 0.3392 -1.3003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135249283.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:06 Heat of formation + Delta-G solvation = -101.792026 kcal Electronic energy + Delta-G solvation = -30158.219033 eV Core-core repulsion = 25798.860820 eV Total energy + Delta-G solvation = -4359.358213 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.26037 -40.84989 -39.56340 -38.45197 -36.40089 -34.80138 -34.26581 -33.59228 -32.42906 -29.49076 -29.23258 -28.52387 -27.56438 -26.08741 -25.48449 -23.51873 -22.44998 -21.67514 -20.29265 -19.25218 -18.49931 -18.35848 -17.50524 -16.95467 -16.43818 -15.82936 -15.53380 -15.30634 -15.18255 -14.98804 -14.97342 -14.71695 -14.30026 -14.08893 -13.85065 -13.57692 -13.50231 -13.37776 -13.21972 -12.54721 -12.42174 -12.31366 -12.25764 -12.13157 -11.88600 -11.67048 -11.60841 -11.40859 -11.35513 -10.97801 -10.77127 -10.59333 -10.55767 -10.13896 -9.86760 -9.78754 -9.47149 -8.98473 -8.51595 -7.88680 -7.12469 -6.63099 -4.20825 1.83127 2.11105 2.66527 3.04651 3.06343 3.10670 3.36823 3.53645 3.82507 4.02045 4.33251 4.50273 4.69312 4.74367 4.83503 4.85338 4.93576 5.03163 5.10185 5.12477 5.37748 5.39034 5.45397 5.54857 5.57281 5.62331 5.66249 5.72936 5.75613 5.78325 5.92470 6.01809 6.05469 6.15616 6.40135 6.56795 6.69534 6.88879 6.90303 7.03135 7.05227 7.09394 7.22661 7.64494 7.81347 8.12665 8.77112 8.83607 9.44377 10.54030 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011083 B = 0.003768 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.789109 B = 7428.631719 C = 9644.490325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.096 3.904 3 C -0.174 4.174 4 C 0.110 3.890 5 N -0.630 5.630 6 C 0.710 3.290 7 O -0.582 6.582 8 N -0.664 5.664 9 C 0.075 3.925 10 C -0.050 4.050 11 C -0.228 4.228 12 C 0.128 3.872 13 F -0.151 7.151 14 C -0.258 4.258 15 C 0.157 3.843 16 O -0.169 6.169 17 C -0.393 4.393 18 H 0.094 0.906 19 C 0.044 3.956 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.272 1.272 23 H -0.276 1.276 24 H -0.266 1.266 25 C 0.074 3.926 26 C 0.046 3.954 27 O -0.371 6.371 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.409 0.591 37 H 0.143 0.857 38 H 0.123 0.877 39 H 0.143 0.857 40 H 0.272 0.728 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.108 0.892 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.595 6.523 -3.654 13.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.056 3.944 3 C -0.232 4.232 4 C -0.013 4.013 5 N -0.368 5.368 6 C 0.412 3.588 7 O -0.461 6.461 8 N -0.312 5.312 9 C -0.020 4.020 10 C -0.070 4.070 11 C -0.248 4.248 12 C 0.109 3.891 13 F -0.130 7.130 14 C -0.279 4.279 15 C 0.101 3.899 16 O -0.072 6.072 17 C -0.468 4.468 18 H 0.112 0.888 19 C -0.161 4.161 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.198 1.198 23 H -0.201 1.201 24 H -0.190 1.190 25 C -0.049 4.049 26 C -0.031 4.031 27 O -0.290 6.290 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.120 0.880 36 H 0.248 0.752 37 H 0.160 0.840 38 H 0.141 0.859 39 H 0.161 0.839 40 H 0.082 0.918 41 H 0.112 0.888 42 H 0.099 0.901 43 H 0.126 0.874 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.135 6.425 -3.423 14.152 hybrid contribution 1.598 -0.540 0.029 1.687 sum -10.538 5.885 -3.394 12.538 Atomic orbital electron populations 1.21707 0.91630 1.03124 1.02823 1.21933 0.95156 0.91694 0.85620 1.22349 1.02257 0.95848 1.02706 1.22143 0.78856 1.01353 0.98960 1.47179 1.06243 1.67108 1.16279 1.15732 0.81147 0.78580 0.83302 1.90860 1.75211 1.54309 1.25679 1.42366 1.03456 1.71602 1.13824 1.16667 0.91170 1.00220 0.93896 1.20676 0.99044 0.94469 0.92827 1.20489 0.95150 1.06323 1.02861 1.17461 0.89025 0.96971 0.85681 1.91409 1.72060 1.92559 1.56993 1.20840 1.04239 1.04576 0.98209 1.18807 0.92501 0.88652 0.89910 1.83926 1.33599 1.44402 1.45290 1.21353 0.89670 1.25246 1.10564 0.88835 1.25265 0.99907 0.96402 0.94544 1.70002 1.36646 1.31912 1.10907 0.85687 0.80030 0.79471 0.78191 1.19770 1.20143 1.19041 1.22300 0.99713 0.98927 0.83995 1.22922 0.81447 1.00427 0.98353 1.87988 1.20780 1.76865 1.43404 0.90763 0.91468 0.91538 0.91923 0.91822 0.91277 0.90997 0.88033 0.75237 0.83988 0.85936 0.83946 0.91844 0.88788 0.90123 0.87440 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.85 37.16 0.33 -0.77 16 2 C 0.10 1.01 1.11 -90.46 -0.10 0.91 16 3 C -0.17 -1.78 8.10 37.16 0.30 -1.47 16 4 C 0.11 1.36 5.29 -3.53 -0.02 1.34 16 5 N -0.63 -9.08 2.54 -178.25 -0.45 -9.54 16 6 C 0.71 12.69 8.16 -86.92 -0.71 11.98 16 7 O -0.58 -11.70 13.25 5.28 0.07 -11.63 16 8 N -0.66 -12.46 5.10 -14.07 -0.07 -12.53 16 9 C 0.08 1.57 6.33 -83.43 -0.53 1.04 16 10 C -0.05 -0.96 8.70 -39.43 -0.34 -1.30 16 11 C -0.23 -4.24 10.02 -39.48 -0.40 -4.64 16 12 C 0.13 2.57 7.29 -39.43 -0.29 2.28 16 13 F -0.15 -2.90 17.26 2.25 0.04 -2.86 16 14 C -0.26 -5.62 9.14 -39.36 -0.36 -5.98 16 15 C 0.16 3.62 6.66 -38.95 -0.26 3.36 16 16 O -0.17 -4.38 9.31 0.01 0.00 -4.38 16 17 C -0.39 -10.24 9.49 30.88 0.29 -9.94 16 18 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 19 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 20 N -0.86 -23.02 13.67 55.48 0.76 -22.26 16 21 Si 0.94 19.48 29.55 -169.99 -5.02 14.46 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 23 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 25 C 0.07 0.93 6.62 -3.75 -0.02 0.91 16 26 C 0.05 0.49 6.58 37.10 0.24 0.73 16 27 O -0.37 -4.31 10.23 -35.23 -0.36 -4.67 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.73 6.11 -51.93 -0.32 0.41 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.10 1.31 7.12 -51.93 -0.37 0.94 16 36 H 0.41 7.35 6.09 -40.82 -0.25 7.10 16 37 H 0.14 2.67 6.18 -52.48 -0.32 2.35 16 38 H 0.12 1.97 8.06 -52.49 -0.42 1.54 16 39 H 0.14 3.09 5.64 -52.48 -0.30 2.80 16 40 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 41 H 0.09 1.23 5.65 -51.93 -0.29 0.94 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.06 0.62 6.25 -51.93 -0.32 0.29 16 LS Contribution 359.81 15.07 5.42 5.42 Total: -1.00 -29.83 359.81 -6.96 -36.79 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -5.39 Total: 11.71 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -1.96 Total: -0.52 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.23 Total: -44.33 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.29 Total: -20.68 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.04 Total: -2.86 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.83 -6.96 -36.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135249283.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.001 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds