Wall clock time and date at job start Tue Mar 31 2020 21:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.55347 * 2 1 4 4 C 1.53298 * 109.50694 * 120.12397 * 2 1 3 5 5 N 1.47155 * 108.37808 * 172.22561 * 4 2 1 6 6 C 1.34781 * 120.97936 * 129.44168 * 5 4 2 7 7 O 1.21598 * 120.00041 * 5.22439 * 6 5 4 8 8 N 1.34774 * 119.99846 * 185.22072 * 6 5 4 9 9 C 1.40142 * 119.99884 * 184.46740 * 8 6 5 10 10 C 1.38694 * 120.07261 * 325.44365 * 9 8 6 11 11 C 1.38200 * 120.02375 * 180.02562 * 10 9 8 12 12 C 1.38553 * 120.16850 * 0.24899 * 11 10 9 13 13 F 1.35094 * 119.91991 * 179.70546 * 12 11 10 14 14 C 1.38346 * 120.14968 * 359.44989 * 12 11 10 15 15 C 1.38728 * 119.97736 * 0.57302 * 14 12 11 16 16 O 1.35780 * 120.08635 * 179.67808 * 15 14 12 17 17 C 1.34811 * 117.00072 * 354.51907 * 16 15 14 18 18 H 1.07994 * 119.99714 * 5.05000 * 17 16 15 19 19 C 1.38633 * 120.00032 * 185.04532 * 17 16 15 20 20 N 1.31575 * 120.00102 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00067 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47030 * 89.99991 * 21 19 17 23 23 H 1.48501 * 109.47434 * 210.00608 * 21 19 17 24 24 H 1.48511 * 109.46772 * 330.00393 * 21 19 17 25 25 C 1.47148 * 118.04165 * 309.71634 * 5 4 2 26 26 C 1.52884 * 108.60523 * 50.22686 * 25 5 4 27 27 O 1.42957 * 109.29645 * 307.93723 * 26 25 5 28 28 H 1.08998 * 109.46937 * 299.87835 * 1 2 3 29 29 H 1.08996 * 109.46649 * 59.87534 * 1 2 3 30 30 H 1.08993 * 109.46807 * 179.87189 * 1 2 3 31 31 H 1.08994 * 109.46832 * 180.12328 * 3 2 1 32 32 H 1.09002 * 109.46900 * 300.12477 * 3 2 1 33 33 H 1.08999 * 109.47167 * 60.12450 * 3 2 1 34 34 H 1.08998 * 109.68142 * 52.50841 * 4 2 1 35 35 H 1.08999 * 109.68447 * 291.94326 * 4 2 1 36 36 H 0.96999 * 120.00651 * 4.46730 * 8 6 5 37 37 H 1.08006 * 119.99171 * 0.02562 * 10 9 8 38 38 H 1.07997 * 119.91716 * 179.97438 * 11 10 9 39 39 H 1.08004 * 120.00745 * 180.29938 * 14 12 11 40 40 H 0.97002 * 119.99897 * 179.97438 * 20 19 17 41 41 H 1.08995 * 109.68623 * 170.00707 * 25 5 4 42 42 H 1.09004 * 109.68148 * 290.56492 * 25 5 4 43 43 H 1.09002 * 109.58277 * 187.92473 * 26 25 5 44 44 H 1.09005 * 109.40614 * 67.84271 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0422 1.4418 0.0000 4 6 2.0420 -0.7252 1.2498 5 7 3.5011 -0.8762 1.1337 6 6 4.3193 -0.5033 2.1377 7 8 3.8516 -0.1234 3.1939 8 7 5.6558 -0.5516 1.9711 9 6 6.5069 -0.2540 3.0440 10 6 6.1446 0.7116 3.9713 11 6 6.9849 1.0047 5.0287 12 6 8.1929 0.3396 5.1631 13 9 9.0132 0.6343 6.1952 14 6 8.5586 -0.6292 4.2456 15 6 7.7200 -0.9279 3.1816 16 8 8.0797 -1.8737 2.2763 17 6 9.3124 -2.4046 2.4027 18 1 9.9329 -2.1345 3.2443 19 6 9.7835 -3.2974 1.4524 20 7 9.0276 -3.6262 0.4269 21 14 11.4913 -4.0336 1.6280 22 1 11.4092 -5.2934 2.4099 23 1 12.0469 -4.3219 0.2814 24 1 12.3754 -3.0705 2.3325 25 6 4.0411 -1.4406 -0.1134 26 6 3.4313 -0.6855 -1.2947 27 8 2.0076 -0.6764 -1.1654 28 1 -0.3633 0.5119 0.8911 29 1 -0.3632 0.5158 -0.8889 30 1 -0.3633 -1.0276 -0.0023 31 1 3.1321 1.4402 -0.0022 32 1 1.6777 1.9568 -0.8889 33 1 1.6814 1.9555 0.8911 34 1 1.5757 -1.7079 1.3209 35 1 1.8031 -0.1398 2.1377 36 1 6.0288 -0.7924 1.1086 37 1 5.2054 1.2347 3.8672 38 1 6.7012 1.7571 5.7496 39 1 9.4986 -1.1495 4.3553 40 1 9.3574 -4.2506 -0.2382 41 1 5.1252 -1.3287 -0.1279 42 1 3.7795 -2.4965 -0.1820 43 1 3.7092 -1.1787 -2.2262 44 1 3.8030 0.3392 -1.3003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135249283.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:05 Heat of formation + Delta-G solvation = -119.316931 kcal Electronic energy + Delta-G solvation = -30158.978970 eV Core-core repulsion = 25798.860820 eV Total energy + Delta-G solvation = -4360.118150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.83890 -42.13721 -40.96821 -39.86835 -38.06798 -36.07640 -35.56654 -34.60157 -34.30449 -31.13227 -30.29735 -30.01516 -28.31453 -27.51048 -27.08285 -24.53813 -24.04350 -23.26643 -21.54728 -20.33963 -20.14989 -19.91890 -19.07040 -18.37467 -17.46033 -17.18884 -16.99036 -16.89952 -16.57160 -16.40264 -16.03947 -15.91427 -15.82768 -15.56821 -15.26022 -15.18774 -14.91981 -14.82982 -14.29219 -14.04465 -13.83786 -13.45507 -13.21410 -13.14243 -13.00008 -12.91884 -12.90583 -12.58618 -12.47751 -12.37497 -12.24699 -12.14956 -11.67342 -11.59020 -11.30100 -11.08461 -11.00913 -10.82980 -9.70162 -9.52823 -8.76692 -8.51457 -6.17613 0.18869 0.45199 1.36807 1.38936 1.43600 1.52205 1.93244 2.13666 2.65660 2.67478 2.70420 3.04713 3.16036 3.44099 3.59194 3.81102 3.88438 3.92019 3.94545 4.06657 4.14952 4.19500 4.34243 4.41205 4.55166 4.62139 4.65668 4.75699 4.77120 4.85719 4.89715 4.93079 4.96842 4.99892 5.18194 5.20959 5.22891 5.27587 5.33557 5.40583 5.54493 5.74836 5.92937 6.03994 6.16709 6.70836 6.93108 7.33274 7.61505 8.68809 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011083 B = 0.003768 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.789109 B = 7428.631719 C = 9644.490325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.097 3.903 3 C -0.171 4.171 4 C 0.106 3.894 5 N -0.624 5.624 6 C 0.707 3.293 7 O -0.606 6.606 8 N -0.666 5.666 9 C 0.075 3.925 10 C -0.050 4.050 11 C -0.203 4.203 12 C 0.123 3.877 13 F -0.144 7.144 14 C -0.264 4.264 15 C 0.132 3.868 16 O -0.202 6.202 17 C -0.417 4.417 18 H 0.099 0.901 19 C -0.006 4.006 20 N -0.903 5.903 21 Si 1.010 2.990 22 H -0.267 1.267 23 H -0.269 1.269 24 H -0.257 1.257 25 C 0.072 3.928 26 C 0.051 3.949 27 O -0.378 6.378 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.410 0.590 37 H 0.153 0.847 38 H 0.159 0.841 39 H 0.137 0.863 40 H 0.275 0.725 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.128 0.872 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.373 7.508 -3.417 14.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.057 3.943 3 C -0.228 4.228 4 C -0.017 4.017 5 N -0.361 5.361 6 C 0.410 3.590 7 O -0.487 6.487 8 N -0.315 5.315 9 C -0.021 4.021 10 C -0.070 4.070 11 C -0.223 4.223 12 C 0.104 3.896 13 F -0.123 7.123 14 C -0.284 4.284 15 C 0.078 3.922 16 O -0.107 6.107 17 C -0.493 4.493 18 H 0.116 0.884 19 C -0.206 4.206 20 N -0.539 5.539 21 Si 0.830 3.170 22 H -0.192 1.192 23 H -0.193 1.193 24 H -0.181 1.181 25 C -0.052 4.052 26 C -0.026 4.026 27 O -0.297 6.297 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.249 0.751 37 H 0.170 0.830 38 H 0.176 0.824 39 H 0.154 0.846 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.146 0.854 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.953 7.433 -3.190 15.271 hybrid contribution 1.685 -0.701 0.066 1.826 sum -11.268 6.733 -3.124 13.493 Atomic orbital electron populations 1.21727 0.89534 1.03673 1.03982 1.22041 0.96626 0.91357 0.84246 1.22322 1.01083 0.95831 1.03569 1.22367 0.77386 1.01932 0.99991 1.47262 1.06888 1.65959 1.15953 1.15837 0.80904 0.78548 0.83746 1.90823 1.75489 1.55568 1.26791 1.42392 1.03840 1.71782 1.13478 1.16934 0.90770 0.99892 0.94484 1.20866 0.99496 0.94021 0.92641 1.20879 0.93648 1.05385 1.02371 1.17452 0.89692 0.96852 0.85651 1.91428 1.71952 1.92415 1.56475 1.20918 1.03999 1.05075 0.98440 1.19146 0.93717 0.89161 0.90200 1.83907 1.33900 1.46155 1.46775 1.21742 0.90241 1.26048 1.11263 0.88404 1.26339 1.03774 0.96500 0.94013 1.70107 1.38657 1.33177 1.11997 0.84694 0.75156 0.78640 0.78497 1.19243 1.19307 1.18133 1.22428 0.99395 0.99274 0.84054 1.22956 0.81075 1.00502 0.98062 1.87993 1.20996 1.77058 1.43677 0.89333 0.90593 0.91331 0.93657 0.90552 0.90823 0.90469 0.88595 0.75081 0.82960 0.82384 0.84553 0.91583 0.89706 0.90059 0.85381 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.85 71.98 0.64 -1.20 16 2 C 0.10 1.89 1.11 -10.69 -0.01 1.87 16 3 C -0.17 -3.21 8.10 71.98 0.58 -2.63 16 4 C 0.11 2.52 5.29 86.35 0.46 2.98 16 5 N -0.62 -17.89 2.54 -836.12 -2.13 -20.02 16 6 C 0.71 25.37 8.16 179.05 1.46 26.83 16 7 O -0.61 -24.14 13.25 -4.02 -0.05 -24.19 16 8 N -0.67 -25.51 5.10 -316.69 -1.62 -27.13 16 9 C 0.07 3.14 6.33 38.21 0.24 3.38 16 10 C -0.05 -1.86 8.70 22.37 0.19 -1.67 16 11 C -0.20 -7.06 10.02 22.34 0.22 -6.84 16 12 C 0.12 4.77 7.29 22.37 0.16 4.93 16 13 F -0.14 -5.23 17.26 44.97 0.78 -4.46 16 14 C -0.26 -11.58 9.14 22.41 0.20 -11.37 16 15 C 0.13 6.21 6.66 22.68 0.15 6.36 16 16 O -0.20 -10.91 9.31 -22.88 -0.21 -11.12 16 17 C -0.42 -22.49 9.49 67.91 0.64 -21.85 16 18 H 0.10 4.97 5.20 -2.91 -0.02 4.96 16 19 C -0.01 -0.33 5.49 84.83 0.47 0.14 16 20 N -0.90 -49.82 13.67 21.61 0.30 -49.52 16 21 Si 1.01 40.30 29.55 68.60 2.03 42.32 16 22 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 23 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 24 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 25 C 0.07 1.80 6.62 86.22 0.57 2.37 16 26 C 0.05 1.04 6.58 71.94 0.47 1.51 16 27 O -0.38 -8.14 10.23 -148.98 -1.52 -9.66 16 28 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.04 1.01 6.11 -2.39 -0.01 0.99 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 35 H 0.10 2.41 7.12 -2.39 -0.02 2.39 16 36 H 0.41 15.37 6.09 -92.71 -0.56 14.81 16 37 H 0.15 5.48 6.18 -2.91 -0.02 5.46 16 38 H 0.16 4.41 8.06 -2.91 -0.02 4.38 16 39 H 0.14 6.06 5.64 -2.91 -0.02 6.05 16 40 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 41 H 0.08 2.30 5.65 -2.39 -0.01 2.29 16 42 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.06 1.24 6.25 -2.38 -0.01 1.23 16 Total: -1.00 -64.84 359.81 4.52 -60.32 By element: Atomic # 1 Polarization: 38.15 SS G_CDS: 0.50 Total: 38.65 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 6.46 Total: 4.81 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -3.45 Total: -96.67 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -1.79 Total: -44.97 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.78 Total: -4.46 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Total: -64.84 4.52 -60.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135249283.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.999 kcal (2) G-P(sol) polarization free energy of solvation -64.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds