Wall clock time and date at job start Tue Mar 31 2020 20:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86792 * 119.99823 * 2 1 4 4 H 1.48498 * 109.47332 * 240.00213 * 3 2 1 5 5 H 1.48496 * 109.47388 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46985 * 120.00276 * 3 2 1 7 7 C 1.38637 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99741 * 179.97438 * 7 2 1 9 9 O 1.34809 * 120.00058 * 0.02562 * 7 2 1 10 10 C 1.35775 * 116.99663 * 185.04616 * 9 7 2 11 11 C 1.38744 * 120.09145 * 354.55975 * 10 9 7 12 12 C 1.38340 * 119.97712 * 180.02562 * 11 10 9 13 13 F 1.35100 * 119.92042 * 180.02562 * 12 11 10 14 14 C 1.38539 * 120.15584 * 0.02562 * 12 11 10 15 15 C 1.38206 * 120.17390 * 359.97438 * 14 12 11 16 16 C 1.38695 * 120.01712 * 0.27800 * 15 14 12 17 17 N 1.40140 * 120.07121 * 179.72569 * 16 15 14 18 18 C 1.34770 * 120.00057 * 34.59307 * 17 16 15 19 19 O 1.21596 * 120.00415 * 355.63347 * 18 17 16 20 20 N 1.34776 * 120.00224 * 175.63011 * 18 17 16 21 21 C 1.46492 * 120.00601 * 180.02562 * 20 18 17 22 22 H 1.09006 * 109.47020 * 325.00068 * 21 20 18 23 23 C 1.53004 * 109.47275 * 84.99559 * 21 20 18 24 24 C 1.53006 * 109.46977 * 180.02562 * 23 21 20 25 25 C 1.53000 * 109.47147 * 300.00402 * 24 23 21 26 26 C 1.52993 * 109.47166 * 59.99998 * 25 24 23 27 27 C 1.52997 * 109.47540 * 299.99705 * 26 25 24 28 28 H 1.09004 * 109.47310 * 300.00891 * 27 26 25 29 29 O 1.42897 * 109.47540 * 180.02562 * 27 26 25 30 30 H 0.96994 * 120.00375 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.00475 * 0.02562 * 11 10 9 32 32 H 1.07998 * 119.91507 * 180.02562 * 14 12 11 33 33 H 1.07994 * 119.99115 * 180.02562 * 15 14 12 34 34 H 0.96997 * 119.99658 * 214.59840 * 17 16 15 35 35 H 0.97006 * 119.99224 * 0.02562 * 20 18 17 36 36 H 1.08999 * 109.47278 * 300.00272 * 23 21 20 37 37 H 1.09002 * 109.46889 * 60.00756 * 23 21 20 38 38 H 1.08995 * 109.46953 * 180.02562 * 24 23 21 39 39 H 1.09002 * 109.46784 * 60.00581 * 24 23 21 40 40 H 1.09000 * 109.46787 * 299.99402 * 25 24 23 41 41 H 1.09003 * 109.46897 * 180.02562 * 25 24 23 42 42 H 1.08999 * 109.46933 * 180.02562 * 26 25 24 43 43 H 1.08999 * 109.47102 * 60.00371 * 26 25 24 44 44 H 0.96705 * 113.99345 * 60.00245 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6965 -1.2125 5 1 1.2848 2.7464 0.0006 6 1 3.1035 1.6963 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3349 -2.3681 -0.0016 10 6 2.0703 -3.5045 0.1044 11 6 3.4562 -3.4398 0.0938 12 6 4.2032 -4.5992 0.2013 13 9 5.5526 -4.5347 0.1915 14 6 3.5707 -5.8261 0.3192 15 6 2.1906 -5.8980 0.3304 16 6 1.4346 -4.7407 0.2177 17 7 0.0351 -4.8128 0.2232 18 6 -0.5890 -5.7388 0.9777 19 8 0.0619 -6.5623 1.5915 20 7 -1.9346 -5.7521 1.0521 21 6 -2.6131 -6.7583 1.8726 22 1 -2.0579 -7.6955 1.8312 23 6 -2.6842 -6.2714 3.3214 24 6 -3.3922 -7.3227 4.1785 25 6 -4.8088 -7.5456 3.6453 26 6 -4.7377 -8.0325 2.1966 27 6 -4.0297 -6.9813 1.3394 28 1 -4.5852 -6.0444 1.3811 29 8 -3.9638 -7.4358 -0.0138 30 1 -0.4850 0.8400 0.0004 31 1 3.9515 -2.4845 0.0016 32 1 4.1577 -6.7288 0.4033 33 1 1.7007 -6.8560 0.4228 34 1 -0.4844 -4.1963 -0.3162 35 1 -2.4539 -5.0953 0.5622 36 1 -1.6749 -6.1130 3.7014 37 1 -3.2394 -5.3343 3.3630 38 1 -3.4432 -6.9757 5.2105 39 1 -2.8366 -8.2595 4.1369 40 1 -5.3643 -6.6087 3.6869 41 1 -5.3134 -8.2942 4.2562 42 1 -5.7469 -8.1909 1.8166 43 1 -4.1822 -8.9694 2.1550 44 1 -4.8278 -7.5978 -0.4167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135292008.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:38 Heat of formation + Delta-G solvation = -135.463907 kcal Electronic energy + Delta-G solvation = -29431.178025 eV Core-core repulsion = 25070.359690 eV Total energy + Delta-G solvation = -4360.818336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -48.20366 -40.39568 -39.36499 -38.35684 -36.34391 -35.75772 -34.02174 -33.94344 -32.37580 -30.21889 -29.48799 -29.11367 -27.64568 -25.46648 -23.24883 -22.70845 -22.09192 -21.43887 -20.43914 -20.13176 -18.30968 -18.14252 -17.63682 -17.43860 -16.86679 -15.86573 -15.44201 -15.19612 -14.98677 -14.88773 -14.71857 -14.57360 -14.26847 -14.04990 -13.77912 -13.65749 -13.54037 -13.41217 -13.14075 -12.91228 -12.76008 -12.28081 -12.08031 -11.81514 -11.64050 -11.46332 -11.32303 -11.09814 -10.94394 -10.90518 -10.69731 -10.53731 -10.41518 -10.19892 -9.79191 -9.71451 -9.36394 -8.93101 -8.86731 -7.82594 -7.03793 -6.57530 -4.15114 1.91016 2.17826 2.95384 3.08745 3.09985 3.11969 3.54975 3.86524 3.87238 4.39338 4.40062 4.44690 4.69109 4.71192 4.88510 4.93737 4.96440 5.00905 5.11256 5.17755 5.20577 5.24041 5.45979 5.63851 5.64932 5.74958 5.78824 5.80838 5.87291 5.92231 6.08601 6.13472 6.20436 6.28183 6.60993 6.71392 6.76366 6.96000 6.99178 7.12865 7.21652 7.38032 7.41309 7.72235 7.86852 8.35994 8.88194 8.95580 9.50713 10.59653 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010826 B = 0.003232 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.805330 B = 8660.669362 C =10430.071026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.392 4.392 8 H 0.093 0.907 9 O -0.169 6.169 10 C 0.157 3.843 11 C -0.259 4.259 12 C 0.127 3.873 13 F -0.152 7.152 14 C -0.228 4.228 15 C -0.051 4.051 16 C 0.081 3.919 17 N -0.665 5.665 18 C 0.707 3.293 19 O -0.587 6.587 20 N -0.735 5.735 21 C 0.177 3.823 22 H 0.093 0.907 23 C -0.131 4.131 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.148 4.148 27 C 0.097 3.903 28 H 0.060 0.940 29 O -0.559 6.559 30 H 0.271 0.729 31 H 0.142 0.858 32 H 0.122 0.878 33 H 0.143 0.857 34 H 0.410 0.590 35 H 0.398 0.602 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.745 -11.818 3.216 16.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.111 0.889 9 O -0.072 6.072 10 C 0.101 3.899 11 C -0.280 4.280 12 C 0.107 3.893 13 F -0.131 7.131 14 C -0.248 4.248 15 C -0.071 4.071 16 C -0.014 4.014 17 N -0.311 5.311 18 C 0.408 3.592 19 O -0.466 6.466 20 N -0.389 5.389 21 C 0.071 3.929 22 H 0.111 0.889 23 C -0.170 4.170 24 C -0.157 4.157 25 C -0.157 4.157 26 C -0.186 4.186 27 C 0.037 3.963 28 H 0.078 0.922 29 O -0.364 6.364 30 H 0.081 0.919 31 H 0.160 0.840 32 H 0.140 0.860 33 H 0.161 0.839 34 H 0.246 0.754 35 H 0.231 0.769 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -9.951 -12.266 3.870 16.262 hybrid contribution -0.382 1.544 -0.522 1.674 sum -10.333 -10.721 3.348 15.262 Atomic orbital electron populations 1.70005 1.05913 1.27980 1.45630 1.25263 0.95892 0.98789 0.96220 0.85760 0.78744 0.79512 0.79379 1.19373 1.20232 1.19397 1.21294 0.91940 0.80471 1.53098 0.88922 1.83920 1.33848 1.11205 1.78263 1.18799 0.89453 0.86974 0.94652 1.20831 0.93415 0.98402 1.15353 1.17452 0.75903 0.94368 1.01583 1.91406 1.30185 1.97383 1.94132 1.20487 0.94635 0.95823 1.13862 1.20692 0.92107 0.97370 0.96976 1.16646 0.81341 0.91017 1.12436 1.42173 1.05143 1.36515 1.47314 1.15838 0.81763 0.81941 0.79628 1.90857 1.64536 1.41008 1.50205 1.44946 1.04826 1.36133 1.53012 1.20702 0.90566 0.92535 0.89053 0.88867 1.21979 1.02257 0.98814 0.93991 1.21537 0.95389 0.99544 0.99232 1.21531 0.97460 1.01480 0.95226 1.22227 1.00720 0.99693 0.95942 1.22103 0.95927 0.96157 0.82068 0.92207 1.86620 1.34310 1.89358 1.26115 0.91876 0.84026 0.85998 0.83925 0.75418 0.76854 0.90251 0.91524 0.91397 0.91486 0.91699 0.91535 0.91363 0.90745 0.77722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.63 13.67 55.48 0.76 -22.87 16 2 C 0.04 1.13 5.49 -17.51 -0.10 1.03 16 3 Si 0.94 19.87 29.55 -169.99 -5.02 14.84 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 7 C -0.39 -10.46 9.49 30.88 0.29 -10.17 16 8 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 9 O -0.17 -4.48 9.32 0.03 0.00 -4.48 16 10 C 0.16 3.70 6.66 -38.94 -0.26 3.44 16 11 C -0.26 -5.78 9.14 -39.36 -0.36 -6.14 16 12 C 0.13 2.60 7.29 -39.43 -0.29 2.31 16 13 F -0.15 -2.98 17.26 2.25 0.04 -2.94 16 14 C -0.23 -4.37 10.02 -39.48 -0.40 -4.77 16 15 C -0.05 -1.02 8.70 -39.42 -0.34 -1.36 16 16 C 0.08 1.73 6.33 -83.43 -0.53 1.20 16 17 N -0.66 -12.80 5.20 -14.07 -0.07 -12.88 16 18 C 0.71 12.95 8.38 -86.92 -0.73 12.22 16 19 O -0.59 -12.16 13.42 5.28 0.07 -12.09 16 20 N -0.74 -10.54 4.95 -58.67 -0.29 -10.83 16 21 C 0.18 2.18 2.15 -67.93 -0.15 2.03 16 22 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 23 C -0.13 -1.50 5.50 -26.73 -0.15 -1.65 16 24 C -0.12 -1.05 5.92 -26.73 -0.16 -1.20 16 25 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 26 C -0.15 -1.07 5.54 -26.74 -0.15 -1.22 16 27 C 0.10 0.89 2.98 -26.73 -0.08 0.81 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 O -0.56 -5.52 13.18 -35.23 -0.46 -5.99 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.14 3.14 5.64 -52.49 -0.30 2.84 16 32 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 33 H 0.14 2.81 6.19 -52.49 -0.32 2.49 16 34 H 0.41 7.51 8.59 -40.82 -0.35 7.16 16 35 H 0.40 5.04 8.62 -40.82 -0.35 4.69 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.38 2.02 9.08 45.56 0.41 2.44 16 LS Contribution 367.93 15.07 5.54 5.54 Total: -1.00 -31.51 367.93 -7.92 -39.43 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -4.94 Total: 16.70 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -3.54 Total: -4.45 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.40 Total: -46.57 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.39 Total: -22.55 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.04 Total: -2.94 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.51 -7.92 -39.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135292008.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.032 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds