Wall clock time and date at job start Tue Mar 31 2020 20:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86803 * 119.99959 * 2 1 4 4 H 1.48497 * 109.47058 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47187 * 299.99646 * 3 2 1 6 6 H 1.48496 * 109.47305 * 59.99755 * 3 2 1 7 7 C 1.38628 * 119.99917 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99926 * 180.02562 * 7 2 1 9 9 O 1.34803 * 120.00158 * 359.97438 * 7 2 1 10 10 C 1.35787 * 117.00145 * 174.98072 * 9 7 2 11 11 C 1.38737 * 120.08467 * 5.19664 * 10 9 7 12 12 C 1.38354 * 119.97260 * 180.29651 * 11 10 9 13 13 F 1.35103 * 119.92102 * 179.69818 * 12 11 10 14 14 C 1.38536 * 120.14950 * 359.72316 * 12 11 10 15 15 C 1.38201 * 120.17770 * 359.97438 * 14 12 11 16 16 C 1.38687 * 120.02150 * 0.02562 * 15 14 12 17 17 N 1.40132 * 120.07763 * 180.02562 * 16 15 14 18 18 C 1.34784 * 119.99918 * 335.22849 * 17 16 15 19 19 O 1.21587 * 119.99827 * 354.32991 * 18 17 16 20 20 N 1.34778 * 119.99878 * 174.33113 * 18 17 16 21 21 C 1.46496 * 119.99462 * 179.97438 * 20 18 17 22 22 H 1.09003 * 109.47690 * 34.99720 * 21 20 18 23 23 C 1.53003 * 109.47390 * 274.99777 * 21 20 18 24 24 C 1.52995 * 109.47173 * 180.02562 * 23 21 20 25 25 C 1.52991 * 109.47386 * 60.00222 * 24 23 21 26 26 C 1.53003 * 109.46968 * 299.99671 * 25 24 23 27 27 C 1.52998 * 109.47150 * 60.00367 * 26 25 24 28 28 H 1.09006 * 109.47325 * 59.99588 * 27 26 25 29 29 O 1.42902 * 109.47095 * 180.02562 * 27 26 25 30 30 H 0.97001 * 119.99797 * 0.02562 * 1 2 3 31 31 H 1.07994 * 120.01384 * 0.02562 * 11 10 9 32 32 H 1.08004 * 119.91067 * 179.97438 * 14 12 11 33 33 H 1.08007 * 119.98849 * 180.02562 * 15 14 12 34 34 H 0.97000 * 120.00579 * 155.22134 * 17 16 15 35 35 H 0.97001 * 120.00001 * 359.97438 * 20 18 17 36 36 H 1.09003 * 109.46657 * 300.00575 * 23 21 20 37 37 H 1.08997 * 109.46939 * 59.99826 * 23 21 20 38 38 H 1.09010 * 109.46685 * 179.97438 * 24 23 21 39 39 H 1.08998 * 109.46994 * 299.99484 * 24 23 21 40 40 H 1.09004 * 109.47627 * 179.97438 * 25 24 23 41 41 H 1.08998 * 109.47657 * 59.99667 * 25 24 23 42 42 H 1.08998 * 109.47493 * 299.99685 * 26 25 24 43 43 H 1.09006 * 109.46971 * 180.02562 * 26 25 24 44 44 H 0.96693 * 113.99843 * 299.99769 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3464 -0.0006 5 1 1.8910 2.3965 -1.2125 6 1 1.8910 2.3965 1.2124 7 6 2.0088 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3348 -2.3680 -0.0005 10 6 2.0703 -3.5045 -0.1069 11 6 3.4561 -3.4391 -0.1008 12 6 4.2032 -4.5980 -0.2155 13 9 5.5527 -4.5325 -0.2156 14 6 3.5707 -5.8251 -0.3308 15 6 2.1906 -5.8980 -0.3313 16 6 1.4346 -4.7409 -0.2167 17 7 0.0352 -4.8135 -0.2165 18 6 -0.5857 -5.8554 -0.8044 19 8 0.0613 -6.6780 -1.4234 20 7 -1.9235 -5.9854 -0.7060 21 6 -2.5983 -7.1176 -1.3455 22 1 -1.9576 -7.9981 -1.2953 23 6 -2.8861 -6.7792 -2.8096 24 6 -3.5914 -7.9614 -3.4772 25 6 -4.9077 -8.2460 -2.7514 26 6 -4.6200 -8.5845 -1.2873 27 6 -3.9148 -7.4023 -0.6196 28 1 -4.5552 -6.5216 -0.6699 29 8 -3.6456 -7.7187 0.7477 30 1 -0.4850 0.8401 -0.0004 31 1 3.9515 -2.4837 -0.0110 32 1 4.1577 -6.7272 -0.4206 33 1 1.7007 -6.8563 -0.4209 34 1 -0.4868 -4.1140 0.2067 35 1 -2.4396 -5.3294 -0.2119 36 1 -3.5268 -5.8988 -2.8598 37 1 -1.9483 -6.5760 -3.3266 38 1 -3.7967 -7.7200 -4.5202 39 1 -2.9509 -8.8420 -3.4270 40 1 -5.4105 -9.0880 -3.2274 41 1 -5.5482 -7.3655 -2.8016 42 1 -3.9797 -9.4652 -1.2370 43 1 -5.5579 -8.7878 -0.7703 44 1 -4.4363 -7.9112 1.2699 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135292028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:42 Heat of formation + Delta-G solvation = -134.090230 kcal Electronic energy + Delta-G solvation = -29387.272644 eV Core-core repulsion = 25026.513876 eV Total energy + Delta-G solvation = -4360.758768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.18206 -40.45041 -39.38417 -38.37949 -36.33447 -35.77416 -34.06277 -33.98107 -32.36926 -30.24314 -29.48972 -29.12312 -27.65716 -25.46771 -23.27639 -22.73787 -22.11517 -21.44211 -20.47676 -20.14140 -18.31559 -18.15224 -17.63989 -17.45400 -16.86943 -15.87930 -15.48220 -15.18892 -14.96155 -14.87558 -14.70467 -14.63695 -14.24597 -14.05825 -13.81741 -13.67453 -13.57642 -13.42628 -13.12063 -12.92926 -12.76220 -12.25782 -12.11533 -11.84263 -11.63201 -11.49676 -11.37489 -11.12700 -10.98697 -10.94302 -10.68534 -10.49367 -10.43914 -10.20917 -9.78964 -9.75142 -9.40526 -8.93876 -8.88803 -7.80814 -6.97468 -6.57343 -4.14456 1.92235 2.18056 2.91704 3.07402 3.10063 3.15216 3.50714 3.84673 3.87392 4.36805 4.40485 4.44838 4.66585 4.68534 4.89357 4.91269 4.94009 5.01795 5.08648 5.17632 5.18695 5.21270 5.43782 5.61865 5.63648 5.72748 5.78673 5.79663 5.85125 5.89513 6.07191 6.11048 6.17308 6.27543 6.58877 6.71439 6.72978 6.96741 7.01364 7.13070 7.21344 7.37311 7.40212 7.72937 7.87438 8.33514 8.88438 8.91567 9.51203 10.60188 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011315 B = 0.003128 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.045997 B = 8949.527003 C =10667.548822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.042 3.958 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.390 4.390 8 H 0.094 0.906 9 O -0.173 6.173 10 C 0.153 3.847 11 C -0.256 4.256 12 C 0.122 3.878 13 F -0.153 7.153 14 C -0.223 4.223 15 C -0.064 4.064 16 C 0.087 3.913 17 N -0.664 5.664 18 C 0.707 3.293 19 O -0.585 6.585 20 N -0.735 5.735 21 C 0.177 3.823 22 H 0.094 0.906 23 C -0.132 4.132 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.148 4.148 27 C 0.097 3.903 28 H 0.060 0.940 29 O -0.559 6.559 30 H 0.270 0.730 31 H 0.142 0.858 32 H 0.122 0.878 33 H 0.150 0.850 34 H 0.413 0.587 35 H 0.398 0.602 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.905 -13.023 -1.808 17.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.466 4.466 8 H 0.112 0.888 9 O -0.076 6.076 10 C 0.097 3.903 11 C -0.277 4.277 12 C 0.102 3.898 13 F -0.132 7.132 14 C -0.243 4.243 15 C -0.084 4.084 16 C -0.008 4.008 17 N -0.310 5.310 18 C 0.407 3.593 19 O -0.464 6.464 20 N -0.389 5.389 21 C 0.071 3.929 22 H 0.112 0.888 23 C -0.171 4.171 24 C -0.157 4.157 25 C -0.157 4.157 26 C -0.186 4.186 27 C 0.038 3.962 28 H 0.078 0.922 29 O -0.364 6.364 30 H 0.080 0.920 31 H 0.160 0.840 32 H 0.140 0.860 33 H 0.167 0.833 34 H 0.249 0.751 35 H 0.231 0.769 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -10.136 -13.449 -2.527 17.030 hybrid contribution -0.378 1.549 0.561 1.690 sum -10.515 -11.900 -1.966 16.001 Atomic orbital electron populations 1.70020 1.05911 1.27748 1.45954 1.25263 0.95900 0.98792 0.96295 0.85623 0.79301 0.80144 0.78289 1.18970 1.20093 1.20079 1.21378 0.91983 0.80400 1.52821 0.88820 1.83900 1.33895 1.11238 1.78579 1.18696 0.89480 0.86858 0.95233 1.20821 0.93352 0.98420 1.15087 1.17453 0.75914 0.94388 1.02070 1.91404 1.30184 1.97379 1.94187 1.20497 0.94632 0.95791 1.13408 1.20821 0.92150 0.97658 0.97811 1.16705 0.81289 0.91278 1.11544 1.42247 1.05270 1.24994 1.58444 1.15829 0.81692 0.82217 0.79515 1.90832 1.64386 1.44303 1.46892 1.44963 1.05720 1.29481 1.58748 1.20718 0.91761 0.89793 0.90632 0.88804 1.21981 1.01821 0.98441 0.94814 1.21534 0.96207 0.98618 0.99349 1.21530 0.97800 1.01740 0.94623 1.22232 1.00732 0.99053 0.96592 1.22097 0.95688 0.96447 0.81995 0.92215 1.86625 1.36583 1.92301 1.20856 0.91989 0.84007 0.86014 0.83309 0.75145 0.76857 0.91553 0.90248 0.91394 0.91459 0.91520 0.91708 0.90728 0.91344 0.77703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.67 13.67 55.48 0.76 -22.91 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 19.92 29.55 -169.99 -5.02 14.89 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 7 C -0.39 -10.40 9.49 30.88 0.29 -10.11 16 8 H 0.09 2.37 5.20 -52.48 -0.27 2.09 16 9 O -0.17 -4.57 9.18 0.01 0.00 -4.57 16 10 C 0.15 3.61 6.66 -38.94 -0.26 3.35 16 11 C -0.26 -5.73 9.14 -39.35 -0.36 -6.09 16 12 C 0.12 2.51 7.29 -39.43 -0.29 2.22 16 13 F -0.15 -3.01 17.26 2.25 0.04 -2.97 16 14 C -0.22 -4.31 10.02 -39.49 -0.40 -4.71 16 15 C -0.06 -1.28 8.71 -39.43 -0.34 -1.63 16 16 C 0.09 1.87 6.45 -83.44 -0.54 1.34 16 17 N -0.66 -12.77 5.29 -14.07 -0.07 -12.85 16 18 C 0.71 12.74 8.33 -86.91 -0.72 12.01 16 19 O -0.59 -11.93 13.17 5.29 0.07 -11.86 16 20 N -0.74 -10.26 4.95 -58.67 -0.29 -10.55 16 21 C 0.18 2.11 2.15 -67.93 -0.15 1.97 16 22 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 23 C -0.13 -1.44 5.49 -26.73 -0.15 -1.58 16 24 C -0.12 -1.00 5.92 -26.74 -0.16 -1.16 16 25 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 26 C -0.15 -1.04 5.54 -26.73 -0.15 -1.19 16 27 C 0.10 0.87 2.98 -26.73 -0.08 0.79 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 O -0.56 -5.45 13.18 -35.23 -0.46 -5.92 16 30 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.14 3.16 5.63 -52.49 -0.30 2.87 16 32 H 0.12 2.04 8.06 -52.48 -0.42 1.62 16 33 H 0.15 2.97 5.78 -52.48 -0.30 2.67 16 34 H 0.41 7.67 8.37 -40.82 -0.34 7.32 16 35 H 0.40 4.87 8.62 -40.82 -0.35 4.52 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.38 1.99 9.08 45.56 0.41 2.40 16 LS Contribution 367.11 15.07 5.53 5.53 Total: -1.00 -31.51 367.11 -7.91 -39.42 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -4.91 Total: 16.52 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -3.55 Total: -4.75 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.39 Total: -46.31 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.39 Total: -22.34 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.04 Total: -2.97 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.51 -7.91 -39.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135292028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.671 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds