Wall clock time and date at job start Tue Mar 31 2020 20:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86803 * 119.99959 * 2 1 4 4 H 1.48497 * 109.47058 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47187 * 299.99646 * 3 2 1 6 6 H 1.48496 * 109.47305 * 59.99755 * 3 2 1 7 7 C 1.38628 * 119.99917 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99926 * 180.02562 * 7 2 1 9 9 O 1.34803 * 120.00158 * 359.97438 * 7 2 1 10 10 C 1.35787 * 117.00145 * 174.98072 * 9 7 2 11 11 C 1.38737 * 120.08467 * 5.19664 * 10 9 7 12 12 C 1.38354 * 119.97260 * 180.29651 * 11 10 9 13 13 F 1.35103 * 119.92102 * 179.69818 * 12 11 10 14 14 C 1.38536 * 120.14950 * 359.72316 * 12 11 10 15 15 C 1.38201 * 120.17770 * 359.97438 * 14 12 11 16 16 C 1.38687 * 120.02150 * 0.02562 * 15 14 12 17 17 N 1.40132 * 120.07763 * 180.02562 * 16 15 14 18 18 C 1.34784 * 119.99918 * 335.22849 * 17 16 15 19 19 O 1.21587 * 119.99827 * 354.32991 * 18 17 16 20 20 N 1.34778 * 119.99878 * 174.33113 * 18 17 16 21 21 C 1.46496 * 119.99462 * 179.97438 * 20 18 17 22 22 H 1.09003 * 109.47690 * 34.99720 * 21 20 18 23 23 C 1.53003 * 109.47390 * 274.99777 * 21 20 18 24 24 C 1.52995 * 109.47173 * 180.02562 * 23 21 20 25 25 C 1.52991 * 109.47386 * 60.00222 * 24 23 21 26 26 C 1.53003 * 109.46968 * 299.99671 * 25 24 23 27 27 C 1.52998 * 109.47150 * 60.00367 * 26 25 24 28 28 H 1.09006 * 109.47325 * 59.99588 * 27 26 25 29 29 O 1.42902 * 109.47095 * 180.02562 * 27 26 25 30 30 H 0.97001 * 119.99797 * 0.02562 * 1 2 3 31 31 H 1.07994 * 120.01384 * 0.02562 * 11 10 9 32 32 H 1.08004 * 119.91067 * 179.97438 * 14 12 11 33 33 H 1.08007 * 119.98849 * 180.02562 * 15 14 12 34 34 H 0.97000 * 120.00579 * 155.22134 * 17 16 15 35 35 H 0.97001 * 120.00001 * 359.97438 * 20 18 17 36 36 H 1.09003 * 109.46657 * 300.00575 * 23 21 20 37 37 H 1.08997 * 109.46939 * 59.99826 * 23 21 20 38 38 H 1.09010 * 109.46685 * 179.97438 * 24 23 21 39 39 H 1.08998 * 109.46994 * 299.99484 * 24 23 21 40 40 H 1.09004 * 109.47627 * 179.97438 * 25 24 23 41 41 H 1.08998 * 109.47657 * 59.99667 * 25 24 23 42 42 H 1.08998 * 109.47493 * 299.99685 * 26 25 24 43 43 H 1.09006 * 109.46971 * 180.02562 * 26 25 24 44 44 H 0.96693 * 113.99843 * 299.99769 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3464 -0.0006 5 1 1.8910 2.3965 -1.2125 6 1 1.8910 2.3965 1.2124 7 6 2.0088 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3348 -2.3680 -0.0005 10 6 2.0703 -3.5045 -0.1069 11 6 3.4561 -3.4391 -0.1008 12 6 4.2032 -4.5980 -0.2155 13 9 5.5527 -4.5325 -0.2156 14 6 3.5707 -5.8251 -0.3308 15 6 2.1906 -5.8980 -0.3313 16 6 1.4346 -4.7409 -0.2167 17 7 0.0352 -4.8135 -0.2165 18 6 -0.5857 -5.8554 -0.8044 19 8 0.0613 -6.6780 -1.4234 20 7 -1.9235 -5.9854 -0.7060 21 6 -2.5983 -7.1176 -1.3455 22 1 -1.9576 -7.9981 -1.2953 23 6 -2.8861 -6.7792 -2.8096 24 6 -3.5914 -7.9614 -3.4772 25 6 -4.9077 -8.2460 -2.7514 26 6 -4.6200 -8.5845 -1.2873 27 6 -3.9148 -7.4023 -0.6196 28 1 -4.5552 -6.5216 -0.6699 29 8 -3.6456 -7.7187 0.7477 30 1 -0.4850 0.8401 -0.0004 31 1 3.9515 -2.4837 -0.0110 32 1 4.1577 -6.7272 -0.4206 33 1 1.7007 -6.8563 -0.4209 34 1 -0.4868 -4.1140 0.2067 35 1 -2.4396 -5.3294 -0.2119 36 1 -3.5268 -5.8988 -2.8598 37 1 -1.9483 -6.5760 -3.3266 38 1 -3.7967 -7.7200 -4.5202 39 1 -2.9509 -8.8420 -3.4270 40 1 -5.4105 -9.0880 -3.2274 41 1 -5.5482 -7.3655 -2.8016 42 1 -3.9797 -9.4652 -1.2370 43 1 -5.5579 -8.7878 -0.7703 44 1 -4.4363 -7.9112 1.2699 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135292028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:41 Heat of formation + Delta-G solvation = -156.671362 kcal Electronic energy + Delta-G solvation = -29388.251836 eV Core-core repulsion = 25026.513876 eV Total energy + Delta-G solvation = -4361.737960 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.81303 -41.87635 -40.72073 -39.68102 -38.03186 -36.54129 -35.56757 -35.20666 -34.30192 -31.21984 -30.95262 -30.35159 -29.03317 -27.38290 -24.49817 -23.83005 -23.40566 -22.80668 -21.80801 -21.02892 -20.15000 -19.69248 -19.16798 -18.38854 -18.19103 -17.15735 -17.00349 -16.90714 -16.58164 -16.23949 -15.97990 -15.86186 -15.55612 -15.36210 -15.25496 -15.01806 -14.92307 -14.68388 -14.24672 -14.00733 -13.84981 -13.72761 -13.58671 -13.43003 -13.06834 -12.65649 -12.56595 -12.36024 -12.23572 -12.12109 -11.79831 -11.65841 -11.61915 -11.39034 -11.24935 -11.04431 -10.83424 -10.77002 -10.11575 -9.54456 -8.67446 -8.50946 -6.16276 0.22133 0.46116 1.37275 1.43097 1.53342 1.58049 2.01935 2.14266 2.70786 3.02261 3.08438 3.17217 3.21746 3.46326 3.69264 3.90288 3.94829 4.02717 4.15423 4.19414 4.21742 4.33969 4.36214 4.39848 4.48033 4.60250 4.80140 4.90556 4.94611 5.00272 5.03089 5.13496 5.14434 5.22420 5.23424 5.28460 5.31128 5.34721 5.45591 5.53315 5.58618 5.91555 5.94988 6.08025 6.91554 6.92932 6.94082 7.44645 7.63513 8.70178 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011315 B = 0.003128 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.045997 B = 8949.527003 C =10667.548822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.009 4.009 3 Si 1.012 2.988 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.415 4.415 8 H 0.099 0.901 9 O -0.205 6.205 10 C 0.127 3.873 11 C -0.260 4.260 12 C 0.117 3.883 13 F -0.145 7.145 14 C -0.199 4.199 15 C -0.066 4.066 16 C 0.087 3.913 17 N -0.666 5.666 18 C 0.703 3.297 19 O -0.611 6.611 20 N -0.720 5.720 21 C 0.171 3.829 22 H 0.068 0.932 23 C -0.127 4.127 24 C -0.116 4.116 25 C -0.115 4.115 26 C -0.142 4.142 27 C 0.103 3.897 28 H 0.076 0.924 29 O -0.581 6.581 30 H 0.274 0.726 31 H 0.137 0.863 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.414 0.586 35 H 0.407 0.593 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.094 0.906 44 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.629 -14.004 -1.895 18.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.209 4.209 3 Si 0.832 3.168 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.192 1.192 7 C -0.490 4.490 8 H 0.116 0.884 9 O -0.110 6.110 10 C 0.074 3.926 11 C -0.281 4.281 12 C 0.097 3.903 13 F -0.123 7.123 14 C -0.219 4.219 15 C -0.087 4.087 16 C -0.009 4.009 17 N -0.312 5.312 18 C 0.404 3.596 19 O -0.491 6.491 20 N -0.374 5.374 21 C 0.066 3.934 22 H 0.086 0.914 23 C -0.166 4.166 24 C -0.154 4.154 25 C -0.152 4.152 26 C -0.180 4.180 27 C 0.044 3.956 28 H 0.094 0.906 29 O -0.390 6.390 30 H 0.083 0.917 31 H 0.155 0.845 32 H 0.174 0.826 33 H 0.173 0.827 34 H 0.250 0.750 35 H 0.243 0.757 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.112 0.888 44 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -10.898 -14.479 -2.603 18.308 hybrid contribution -0.117 1.608 0.578 1.712 sum -11.014 -12.872 -2.025 17.061 Atomic orbital electron populations 1.70126 1.07517 1.28855 1.47765 1.26375 0.96855 1.02072 0.95576 0.84608 0.78220 0.75353 0.78599 1.18072 1.19470 1.19152 1.21779 0.92521 0.81100 1.53645 0.88375 1.83881 1.34671 1.11778 1.80685 1.19010 0.90147 0.86925 0.96563 1.20903 0.93212 0.99079 1.14881 1.17425 0.76244 0.94221 1.02441 1.91424 1.29443 1.97344 1.94134 1.20870 0.94422 0.96534 1.10033 1.20979 0.92598 0.97363 0.97722 1.16960 0.82529 0.91053 1.10388 1.42284 1.04678 1.25484 1.58760 1.15982 0.82855 0.81541 0.79187 1.90798 1.65326 1.45042 1.47977 1.44985 1.04318 1.30067 1.58044 1.20949 0.92795 0.87881 0.91805 0.91354 1.21914 1.00678 1.00087 0.93944 1.21530 0.96958 0.97031 0.99917 1.21523 0.96678 1.02877 0.94156 1.22203 1.01381 0.97543 0.96867 1.22049 0.93751 0.98059 0.81734 0.90630 1.86570 1.38544 1.92478 1.21387 0.91652 0.84522 0.82550 0.82706 0.75029 0.75725 0.90687 0.93565 0.90494 0.92179 0.89854 0.90698 0.91715 0.88758 0.75368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.18 13.67 21.61 0.30 -50.89 16 2 C -0.01 -0.50 5.49 84.82 0.47 -0.03 16 3 Si 1.01 41.14 29.55 68.60 2.03 43.17 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 5 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 6 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 7 C -0.41 -22.82 9.49 67.91 0.64 -22.18 16 8 H 0.10 5.10 5.20 -2.91 -0.02 5.08 16 9 O -0.20 -11.27 9.18 -22.87 -0.21 -11.48 16 10 C 0.13 6.16 6.66 22.68 0.15 6.31 16 11 C -0.26 -11.75 9.14 22.42 0.20 -11.55 16 12 C 0.12 4.68 7.29 22.37 0.16 4.85 16 13 F -0.14 -5.45 17.26 44.97 0.78 -4.67 16 14 C -0.20 -7.29 10.02 22.33 0.22 -7.07 16 15 C -0.07 -2.61 8.71 22.37 0.19 -2.42 16 16 C 0.09 3.79 6.45 38.22 0.25 4.04 16 17 N -0.67 -26.35 5.29 -316.70 -1.68 -28.02 16 18 C 0.70 25.87 8.33 179.05 1.49 27.36 16 19 O -0.61 -25.33 13.17 -3.99 -0.05 -25.38 16 20 N -0.72 -20.28 4.95 -457.79 -2.26 -22.54 16 21 C 0.17 4.05 2.15 45.00 0.10 4.14 16 22 H 0.07 1.99 7.58 -2.39 -0.02 1.97 16 23 C -0.13 -2.76 5.49 30.59 0.17 -2.60 16 24 C -0.12 -1.83 5.92 30.59 0.18 -1.65 16 25 C -0.11 -1.24 5.92 30.59 0.18 -1.06 16 26 C -0.14 -1.63 5.54 30.59 0.17 -1.46 16 27 C 0.10 1.67 2.98 30.60 0.09 1.76 16 28 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 29 O -0.58 -10.42 13.18 -148.98 -1.96 -12.38 16 30 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 31 H 0.14 6.23 5.63 -2.91 -0.02 6.22 16 32 H 0.16 4.67 8.06 -2.91 -0.02 4.65 16 33 H 0.16 6.06 5.78 -2.91 -0.02 6.04 16 34 H 0.41 16.02 8.37 -92.71 -0.78 15.25 16 35 H 0.41 9.92 8.62 -92.71 -0.80 9.12 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 0.68 8.14 -2.38 -0.02 0.67 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 44 H 0.40 3.30 9.08 -74.06 -0.67 2.62 16 Total: -1.00 -69.90 367.11 0.44 -69.46 By element: Atomic # 1 Polarization: 45.45 SS G_CDS: -1.16 Total: 44.29 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 4.67 Total: -1.56 kcal Atomic # 7 Polarization: -97.80 SS G_CDS: -3.65 Total: -101.45 kcal Atomic # 8 Polarization: -47.02 SS G_CDS: -2.23 Total: -49.24 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.78 Total: -4.67 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -69.90 0.44 -69.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135292028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.211 kcal (2) G-P(sol) polarization free energy of solvation -69.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds