Wall clock time and date at job start Tue Mar 31 2020 20:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86798 * 120.00119 * 2 1 4 4 H 1.48503 * 109.47250 * 270.00062 * 3 2 1 5 5 H 1.48507 * 109.47210 * 29.99328 * 3 2 1 6 6 H 1.48498 * 109.47602 * 149.99674 * 3 2 1 7 7 C 1.38637 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99726 * 180.02562 * 7 2 1 9 9 O 1.34800 * 119.99960 * 0.02562 * 7 2 1 10 10 C 1.35778 * 116.99977 * 174.95232 * 9 7 2 11 11 C 1.38739 * 120.08645 * 5.43450 * 10 9 7 12 12 C 1.38346 * 119.97612 * 179.97438 * 11 10 9 13 13 F 1.35106 * 119.92279 * 179.97438 * 12 11 10 14 14 C 1.38540 * 120.15295 * 359.97438 * 12 11 10 15 15 C 1.38200 * 120.17490 * 359.74620 * 14 12 11 16 16 C 1.38694 * 120.01760 * 0.50952 * 15 14 12 17 17 N 1.40139 * 120.07470 * 179.76430 * 16 15 14 18 18 C 1.34782 * 119.99494 * 34.59784 * 17 16 15 19 19 O 1.21589 * 120.00373 * 355.62360 * 18 17 16 20 20 N 1.34776 * 119.99697 * 175.62793 * 18 17 16 21 21 C 1.46503 * 120.00074 * 179.97438 * 20 18 17 22 22 C 1.52999 * 109.47140 * 180.02562 * 21 20 18 23 23 O 1.42910 * 110.43281 * 300.69841 * 22 21 20 24 24 C 1.54886 * 110.48828 * 63.24019 * 22 21 20 25 25 C 1.55238 * 102.58875 * 156.67767 * 24 22 21 26 26 C 1.54270 * 104.22837 * 322.08353 * 25 24 22 27 27 C 1.53873 * 106.59939 * 23.61506 * 26 25 24 28 28 H 0.96997 * 119.99861 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.01202 * 359.95480 * 11 10 9 30 30 H 1.07999 * 119.91476 * 180.02562 * 14 12 11 31 31 H 1.08003 * 119.99113 * 180.25453 * 15 14 12 32 32 H 0.96993 * 120.00536 * 214.59233 * 17 16 15 33 33 H 0.97003 * 120.00056 * 359.97438 * 20 18 17 34 34 H 1.08998 * 109.46970 * 59.99459 * 21 20 18 35 35 H 1.09001 * 109.46853 * 299.99754 * 21 20 18 36 36 H 0.96699 * 113.99787 * 59.29958 * 23 22 21 37 37 H 1.09005 * 110.75455 * 275.06375 * 24 22 21 38 38 H 1.08998 * 110.75795 * 38.44165 * 24 22 21 39 39 H 1.08996 * 110.47071 * 203.39360 * 25 24 22 40 40 H 1.08998 * 110.47015 * 80.77085 * 25 24 22 41 41 H 1.08999 * 110.03053 * 264.32199 * 26 25 24 42 42 H 1.09002 * 110.02829 * 142.89809 * 26 25 24 43 43 H 1.09008 * 110.02950 * 240.71667 * 27 26 25 44 44 H 1.08993 * 110.03911 * 119.28545 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4471 2.6527 0.6999 6 1 3.5472 1.4402 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3349 -2.3680 0.0005 10 6 2.0703 -3.5044 -0.1054 11 6 3.4562 -3.4396 -0.0939 12 6 4.2033 -4.5990 -0.2014 13 9 5.5528 -4.5346 -0.1906 14 6 3.5709 -5.8259 -0.3201 15 6 2.1908 -5.8983 -0.3265 16 6 1.4348 -4.7401 -0.2245 17 7 0.0353 -4.8117 -0.2357 18 6 -0.5903 -5.8615 0.3328 19 8 0.0594 -6.7845 0.7847 20 7 -1.9361 -5.8880 0.4003 21 6 -2.6162 -7.0293 1.0177 22 6 -4.1296 -6.8110 0.9645 23 8 -4.4852 -5.6114 1.6552 24 6 -4.6181 -6.7559 -0.5043 25 6 -6.1158 -7.1440 -0.3775 26 6 -6.1342 -8.2333 0.7147 27 6 -4.8714 -8.0215 1.5680 28 1 -0.4850 0.8400 -0.0004 29 1 3.9515 -2.4844 -0.0013 30 1 4.1579 -6.7286 -0.4034 31 1 1.7009 -6.8568 -0.4150 32 1 -0.4832 -4.1058 -0.6526 33 1 -2.4545 -5.1515 0.0400 34 1 -2.2985 -7.1232 2.0562 35 1 -2.3617 -7.9404 0.4761 36 1 -4.0692 -4.8145 1.2990 37 1 -4.5102 -5.7498 -0.9098 38 1 -4.0818 -7.4803 -1.1172 39 1 -6.4873 -7.5436 -1.3211 40 1 -6.7078 -6.2829 -0.0674 41 1 -6.1137 -9.2220 0.2563 42 1 -7.0252 -8.1266 1.3335 43 1 -4.2379 -8.9075 1.5237 44 1 -5.1493 -7.8121 2.6009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135313242.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:01 Heat of formation + Delta-G solvation = -130.853545 kcal Electronic energy + Delta-G solvation = -29139.450132 eV Core-core repulsion = 24778.831716 eV Total energy + Delta-G solvation = -4360.618415 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.24821 -40.44776 -39.54059 -38.58912 -36.42502 -35.12837 -34.17225 -34.06266 -32.42343 -29.85142 -29.35231 -29.02157 -27.93579 -25.53009 -24.74997 -22.47273 -21.72132 -21.09183 -20.50968 -20.14570 -18.47953 -18.31162 -17.84450 -17.01202 -16.52897 -15.83719 -15.77602 -15.32479 -15.24788 -15.03012 -14.95615 -14.90267 -14.30376 -14.09546 -13.84123 -13.62535 -13.54361 -13.46386 -13.24015 -12.73935 -12.43895 -12.23871 -12.15472 -11.81321 -11.67112 -11.55123 -11.39824 -11.36818 -11.02193 -10.92617 -10.74375 -10.72682 -10.55994 -10.10417 -9.92116 -9.78146 -9.47637 -9.06957 -8.97546 -7.88028 -7.11620 -6.62294 -4.19879 1.84749 2.12170 2.80768 3.05348 3.06987 3.11264 3.42223 3.83768 3.88105 4.20328 4.26002 4.34641 4.43200 4.48698 4.85544 4.88624 4.94538 5.10301 5.11535 5.15460 5.22195 5.36554 5.46318 5.56023 5.61557 5.65884 5.69931 5.72781 5.74436 5.85765 5.94546 6.02845 6.07756 6.18955 6.42624 6.58640 6.66913 6.90381 6.92316 7.06246 7.10469 7.26085 7.42786 7.65672 7.82231 8.20360 8.79871 8.84593 9.45437 10.54824 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010795 B = 0.003072 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.288755 B = 9113.319637 C =11381.099458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.392 4.392 8 H 0.094 0.906 9 O -0.168 6.168 10 C 0.157 3.843 11 C -0.258 4.258 12 C 0.128 3.872 13 F -0.152 7.152 14 C -0.228 4.228 15 C -0.050 4.050 16 C 0.077 3.923 17 N -0.663 5.663 18 C 0.706 3.294 19 O -0.584 6.584 20 N -0.746 5.746 21 C 0.119 3.881 22 C 0.117 3.883 23 O -0.549 6.549 24 C -0.151 4.151 25 C -0.120 4.120 26 C -0.122 4.122 27 C -0.109 4.109 28 H 0.272 0.728 29 H 0.143 0.857 30 H 0.122 0.878 31 H 0.143 0.857 32 H 0.411 0.589 33 H 0.394 0.606 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.377 0.623 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.831 -11.645 -1.809 15.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.468 4.468 8 H 0.112 0.888 9 O -0.071 6.071 10 C 0.101 3.899 11 C -0.279 4.279 12 C 0.108 3.892 13 F -0.130 7.130 14 C -0.249 4.249 15 C -0.070 4.070 16 C -0.018 4.018 17 N -0.310 5.310 18 C 0.406 3.594 19 O -0.462 6.462 20 N -0.403 5.403 21 C -0.005 4.005 22 C 0.076 3.924 23 O -0.355 6.355 24 C -0.189 4.189 25 C -0.158 4.158 26 C -0.160 4.160 27 C -0.147 4.147 28 H 0.081 0.919 29 H 0.160 0.840 30 H 0.140 0.860 31 H 0.160 0.840 32 H 0.246 0.754 33 H 0.228 0.772 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.225 0.775 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.043 -12.685 -0.980 16.209 hybrid contribution 0.654 2.040 -0.643 2.237 sum -9.388 -10.644 -1.623 14.286 Atomic orbital electron populations 1.70000 1.05924 1.27966 1.45553 1.25268 0.95908 0.98820 0.96157 0.85686 0.79054 0.79780 0.78850 1.19750 1.20168 1.19062 1.21352 0.92002 0.80437 1.53039 0.88841 1.83927 1.33890 1.11245 1.78052 1.18817 0.89485 0.87267 0.94316 1.20844 0.93409 0.98440 1.15219 1.17461 0.75937 0.94340 1.01415 1.91412 1.30151 1.97381 1.94099 1.20487 0.94623 0.95815 1.13946 1.20670 0.92138 0.97424 0.96813 1.16639 0.81190 0.91550 1.12439 1.42167 1.05268 1.24423 1.59170 1.15839 0.81575 0.83123 0.78831 1.90880 1.64502 1.37135 1.53651 1.44968 1.05090 1.24392 1.65882 1.21863 0.90587 0.88919 0.99170 1.22323 0.91589 0.86815 0.91713 1.86571 1.72960 1.16465 1.59509 1.23258 0.96897 1.02464 0.96242 1.22354 0.96105 0.98782 0.98514 1.22107 0.97755 0.98982 0.97122 1.22086 0.96494 0.95502 1.00612 0.91858 0.83964 0.85953 0.83984 0.75369 0.77221 0.90760 0.90687 0.77467 0.90933 0.90199 0.91661 0.91224 0.91667 0.91600 0.90105 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.07 13.67 55.48 0.76 -22.32 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 3 Si 0.94 19.52 29.55 -169.99 -5.02 14.50 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 7 C -0.39 -10.24 9.49 30.88 0.29 -9.94 16 8 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 9 O -0.17 -4.33 9.32 0.05 0.00 -4.33 16 10 C 0.16 3.60 6.66 -38.94 -0.26 3.34 16 11 C -0.26 -5.62 9.14 -39.36 -0.36 -5.98 16 12 C 0.13 2.56 7.29 -39.43 -0.29 2.28 16 13 F -0.15 -2.90 17.26 2.25 0.04 -2.86 16 14 C -0.23 -4.25 10.02 -39.48 -0.40 -4.64 16 15 C -0.05 -0.96 8.69 -39.43 -0.34 -1.30 16 16 C 0.08 1.58 6.33 -83.43 -0.53 1.05 16 17 N -0.66 -11.92 5.20 -14.07 -0.07 -12.00 16 18 C 0.71 11.94 8.41 -86.91 -0.73 11.21 16 19 O -0.58 -11.56 13.76 5.29 0.07 -11.48 16 20 N -0.75 -9.25 5.16 -65.22 -0.34 -9.58 16 21 C 0.12 1.33 4.71 -4.04 -0.02 1.31 16 22 C 0.12 1.08 0.89 -88.96 -0.08 1.00 16 23 O -0.55 -5.82 13.05 -35.23 -0.46 -6.28 16 24 C -0.15 -1.21 5.61 -24.55 -0.14 -1.35 16 25 C -0.12 -0.91 6.82 -24.88 -0.17 -1.08 16 26 C -0.12 -0.89 6.80 -25.61 -0.17 -1.06 16 27 C -0.11 -0.90 6.13 -25.61 -0.16 -1.06 16 28 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 29 H 0.14 3.09 5.64 -52.49 -0.30 2.79 16 30 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 31 H 0.14 2.66 6.19 -52.48 -0.32 2.33 16 32 H 0.41 6.94 8.59 -40.82 -0.35 6.59 16 33 H 0.39 3.98 7.17 -40.82 -0.29 3.68 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.38 3.28 7.91 45.56 0.36 3.64 16 37 H 0.07 0.55 7.99 -51.93 -0.41 0.14 16 38 H 0.08 0.63 8.06 -51.93 -0.42 0.21 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.58 7.84 -51.92 -0.41 0.18 16 44 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 LS Contribution 368.65 15.07 5.56 5.56 Total: -1.00 -30.57 368.65 -7.84 -38.41 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -4.93 Total: 15.60 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -3.44 Total: -5.21 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.35 Total: -43.89 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.39 Total: -22.09 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.04 Total: -2.86 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.57 -7.84 -38.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135313242.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.440 kcal (2) G-P(sol) polarization free energy of solvation -30.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds