Wall clock time and date at job start Tue Mar 31 2020 20:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86798 * 120.00119 * 2 1 4 4 H 1.48503 * 109.47250 * 270.00062 * 3 2 1 5 5 H 1.48507 * 109.47210 * 29.99328 * 3 2 1 6 6 H 1.48498 * 109.47602 * 149.99674 * 3 2 1 7 7 C 1.38637 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99726 * 180.02562 * 7 2 1 9 9 O 1.34800 * 119.99960 * 0.02562 * 7 2 1 10 10 C 1.35778 * 116.99977 * 174.95232 * 9 7 2 11 11 C 1.38739 * 120.08645 * 5.43450 * 10 9 7 12 12 C 1.38346 * 119.97612 * 179.97438 * 11 10 9 13 13 F 1.35106 * 119.92279 * 179.97438 * 12 11 10 14 14 C 1.38540 * 120.15295 * 359.97438 * 12 11 10 15 15 C 1.38200 * 120.17490 * 359.74620 * 14 12 11 16 16 C 1.38694 * 120.01760 * 0.50952 * 15 14 12 17 17 N 1.40139 * 120.07470 * 179.76430 * 16 15 14 18 18 C 1.34782 * 119.99494 * 34.59784 * 17 16 15 19 19 O 1.21589 * 120.00373 * 355.62360 * 18 17 16 20 20 N 1.34776 * 119.99697 * 175.62793 * 18 17 16 21 21 C 1.46503 * 120.00074 * 179.97438 * 20 18 17 22 22 C 1.52999 * 109.47140 * 180.02562 * 21 20 18 23 23 O 1.42910 * 110.43281 * 300.69841 * 22 21 20 24 24 C 1.54886 * 110.48828 * 63.24019 * 22 21 20 25 25 C 1.55238 * 102.58875 * 156.67767 * 24 22 21 26 26 C 1.54270 * 104.22837 * 322.08353 * 25 24 22 27 27 C 1.53873 * 106.59939 * 23.61506 * 26 25 24 28 28 H 0.96997 * 119.99861 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.01202 * 359.95480 * 11 10 9 30 30 H 1.07999 * 119.91476 * 180.02562 * 14 12 11 31 31 H 1.08003 * 119.99113 * 180.25453 * 15 14 12 32 32 H 0.96993 * 120.00536 * 214.59233 * 17 16 15 33 33 H 0.97003 * 120.00056 * 359.97438 * 20 18 17 34 34 H 1.08998 * 109.46970 * 59.99459 * 21 20 18 35 35 H 1.09001 * 109.46853 * 299.99754 * 21 20 18 36 36 H 0.96699 * 113.99787 * 59.29958 * 23 22 21 37 37 H 1.09005 * 110.75455 * 275.06375 * 24 22 21 38 38 H 1.08998 * 110.75795 * 38.44165 * 24 22 21 39 39 H 1.08996 * 110.47071 * 203.39360 * 25 24 22 40 40 H 1.08998 * 110.47015 * 80.77085 * 25 24 22 41 41 H 1.08999 * 110.03053 * 264.32199 * 26 25 24 42 42 H 1.09002 * 110.02829 * 142.89809 * 26 25 24 43 43 H 1.09008 * 110.02950 * 240.71667 * 27 26 25 44 44 H 1.08993 * 110.03911 * 119.28545 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4471 2.6527 0.6999 6 1 3.5472 1.4402 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3349 -2.3680 0.0005 10 6 2.0703 -3.5044 -0.1054 11 6 3.4562 -3.4396 -0.0939 12 6 4.2033 -4.5990 -0.2014 13 9 5.5528 -4.5346 -0.1906 14 6 3.5709 -5.8259 -0.3201 15 6 2.1908 -5.8983 -0.3265 16 6 1.4348 -4.7401 -0.2245 17 7 0.0353 -4.8117 -0.2357 18 6 -0.5903 -5.8615 0.3328 19 8 0.0594 -6.7845 0.7847 20 7 -1.9361 -5.8880 0.4003 21 6 -2.6162 -7.0293 1.0177 22 6 -4.1296 -6.8110 0.9645 23 8 -4.4852 -5.6114 1.6552 24 6 -4.6181 -6.7559 -0.5043 25 6 -6.1158 -7.1440 -0.3775 26 6 -6.1342 -8.2333 0.7147 27 6 -4.8714 -8.0215 1.5680 28 1 -0.4850 0.8400 -0.0004 29 1 3.9515 -2.4844 -0.0013 30 1 4.1579 -6.7286 -0.4034 31 1 1.7009 -6.8568 -0.4150 32 1 -0.4832 -4.1058 -0.6526 33 1 -2.4545 -5.1515 0.0400 34 1 -2.2985 -7.1232 2.0562 35 1 -2.3617 -7.9404 0.4761 36 1 -4.0692 -4.8145 1.2990 37 1 -4.5102 -5.7498 -0.9098 38 1 -4.0818 -7.4803 -1.1172 39 1 -6.4873 -7.5436 -1.3211 40 1 -6.7078 -6.2829 -0.0674 41 1 -6.1137 -9.2220 0.2563 42 1 -7.0252 -8.1266 1.3335 43 1 -4.2379 -8.9075 1.5237 44 1 -5.1493 -7.8121 2.6009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135313242.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:00 Heat of formation + Delta-G solvation = -151.894269 kcal Electronic energy + Delta-G solvation = -29140.362526 eV Core-core repulsion = 24778.831716 eV Total energy + Delta-G solvation = -4361.530809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.82001 -41.81121 -40.71555 -39.92218 -38.07707 -35.93242 -35.56673 -35.27852 -34.30050 -31.17396 -30.71820 -29.77679 -29.23480 -27.38260 -25.69441 -24.03918 -23.25255 -22.15424 -21.48264 -20.95996 -20.14816 -19.74660 -19.38604 -18.42605 -17.55373 -17.19318 -16.95836 -16.66098 -16.58669 -16.40302 -16.25960 -15.98050 -15.93700 -15.45289 -15.23103 -15.12637 -14.88983 -14.64439 -14.45127 -14.02290 -13.75682 -13.49226 -13.42291 -13.12750 -13.00149 -12.58879 -12.46158 -12.34495 -12.15986 -12.15430 -12.01226 -11.74488 -11.65176 -11.34671 -11.30874 -11.02484 -10.88763 -10.81698 -10.22554 -9.53949 -8.74573 -8.50540 -6.16230 0.21827 0.47434 1.37919 1.44307 1.52109 1.54264 2.02910 2.14726 2.68814 3.06186 3.09913 3.16418 3.19021 3.46224 3.48653 3.63799 3.74148 3.95613 4.17287 4.25903 4.34635 4.37758 4.48369 4.54037 4.59371 4.70646 4.75482 4.84469 4.93461 4.95282 5.02815 5.06962 5.10077 5.22187 5.23658 5.28714 5.31476 5.33647 5.39909 5.49571 5.56479 5.85896 5.94342 6.07711 6.68932 6.89907 6.94352 7.42867 7.63452 8.69662 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010795 B = 0.003072 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.288755 B = 9113.319637 C =11381.099458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.007 4.007 3 Si 1.009 2.991 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.416 4.416 8 H 0.098 0.902 9 O -0.201 6.201 10 C 0.131 3.869 11 C -0.265 4.265 12 C 0.122 3.878 13 F -0.145 7.145 14 C -0.204 4.204 15 C -0.051 4.051 16 C 0.078 3.922 17 N -0.664 5.664 18 C 0.704 3.296 19 O -0.611 6.611 20 N -0.727 5.727 21 C 0.121 3.879 22 C 0.120 3.880 23 O -0.564 6.564 24 C -0.149 4.149 25 C -0.120 4.120 26 C -0.120 4.120 27 C -0.112 4.112 28 H 0.275 0.725 29 H 0.136 0.864 30 H 0.157 0.843 31 H 0.154 0.846 32 H 0.414 0.586 33 H 0.406 0.594 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.383 0.617 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.092 0.908 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.699 -12.849 -2.378 16.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.207 4.207 3 Si 0.830 3.170 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.184 1.184 7 C -0.492 4.492 8 H 0.115 0.885 9 O -0.106 6.106 10 C 0.077 3.923 11 C -0.285 4.285 12 C 0.102 3.898 13 F -0.124 7.124 14 C -0.224 4.224 15 C -0.071 4.071 16 C -0.017 4.017 17 N -0.311 5.311 18 C 0.405 3.595 19 O -0.492 6.492 20 N -0.384 5.384 21 C -0.003 4.003 22 C 0.079 3.921 23 O -0.371 6.371 24 C -0.186 4.186 25 C -0.157 4.157 26 C -0.158 4.158 27 C -0.150 4.150 28 H 0.084 0.916 29 H 0.153 0.847 30 H 0.175 0.825 31 H 0.171 0.829 32 H 0.250 0.750 33 H 0.243 0.757 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.232 0.768 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.110 0.890 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.934 -13.918 -1.558 17.171 hybrid contribution 0.649 2.163 -0.462 2.305 sum -9.285 -11.755 -2.020 15.115 Atomic orbital electron populations 1.70102 1.07425 1.28928 1.47492 1.26329 0.96837 1.01971 0.95549 0.84701 0.77856 0.75254 0.79225 1.18822 1.19565 1.18378 1.21730 0.92507 0.81179 1.53804 0.88456 1.83904 1.34607 1.11753 1.80306 1.19162 0.90126 0.87442 0.95541 1.20923 0.93362 0.99061 1.15185 1.17462 0.76225 0.94253 1.01879 1.91429 1.29521 1.97356 1.94065 1.20879 0.94557 0.96453 1.10486 1.20870 0.92469 0.97274 0.96519 1.16886 0.82576 0.91198 1.11063 1.42172 1.04553 1.24922 1.59493 1.15957 0.82716 0.82350 0.78488 1.90848 1.65509 1.38012 1.54820 1.44858 1.03603 1.25151 1.64786 1.21976 0.91724 0.88542 0.98045 1.22373 0.90137 0.86798 0.92762 1.86564 1.73175 1.17168 1.60197 1.23253 0.97315 1.02908 0.95154 1.22359 0.95516 0.98648 0.99198 1.22116 0.97125 0.99632 0.96901 1.22155 0.97160 0.95420 1.00244 0.91629 0.84659 0.82493 0.82887 0.74974 0.75729 0.92460 0.90005 0.76784 0.90614 0.89644 0.90449 0.92025 0.90261 0.91513 0.88995 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.75 13.67 21.61 0.30 -49.46 16 2 C -0.01 -0.36 5.49 84.83 0.47 0.10 16 3 Si 1.01 40.30 29.55 68.60 2.03 42.33 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 7 C -0.42 -22.35 9.49 67.92 0.64 -21.71 16 8 H 0.10 4.93 5.20 -2.91 -0.02 4.92 16 9 O -0.20 -10.69 9.32 -22.75 -0.21 -10.90 16 10 C 0.13 6.10 6.66 22.68 0.15 6.25 16 11 C -0.26 -11.55 9.14 22.42 0.20 -11.35 16 12 C 0.12 4.69 7.29 22.37 0.16 4.85 16 13 F -0.14 -5.28 17.26 44.97 0.78 -4.50 16 14 C -0.20 -7.05 10.02 22.33 0.22 -6.82 16 15 C -0.05 -1.87 8.69 22.37 0.19 -1.67 16 16 C 0.08 3.21 6.33 38.22 0.24 3.45 16 17 N -0.66 -23.87 5.20 -316.69 -1.65 -25.51 16 18 C 0.70 23.41 8.41 179.05 1.51 24.91 16 19 O -0.61 -23.65 13.76 -4.00 -0.05 -23.71 16 20 N -0.73 -17.46 5.16 -478.52 -2.47 -19.93 16 21 C 0.12 2.58 4.71 86.38 0.41 2.99 16 22 C 0.12 2.08 0.89 -9.72 -0.01 2.07 16 23 O -0.56 -11.60 13.05 -148.98 -1.94 -13.55 16 24 C -0.15 -2.13 5.61 32.01 0.18 -1.95 16 25 C -0.12 -1.59 6.82 31.79 0.22 -1.38 16 26 C -0.12 -1.53 6.80 31.32 0.21 -1.31 16 27 C -0.11 -1.71 6.13 31.32 0.19 -1.51 16 28 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 29 H 0.14 6.01 5.64 -2.91 -0.02 5.99 16 30 H 0.16 4.37 8.06 -2.91 -0.02 4.34 16 31 H 0.15 5.40 6.19 -2.91 -0.02 5.38 16 32 H 0.41 14.21 8.59 -92.71 -0.80 13.42 16 33 H 0.41 7.89 7.17 -92.71 -0.66 7.22 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.38 6.48 7.91 -74.06 -0.59 5.90 16 37 H 0.08 1.04 7.99 -2.38 -0.02 1.02 16 38 H 0.08 1.15 8.06 -2.39 -0.02 1.13 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.09 1.18 7.84 -2.38 -0.02 1.16 16 44 H 0.07 1.21 8.07 -2.39 -0.02 1.19 16 Total: -1.00 -66.16 368.65 0.81 -65.36 By element: Atomic # 1 Polarization: 43.91 SS G_CDS: -0.96 Total: 42.95 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 4.99 Total: -3.08 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -3.82 Total: -94.90 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: -2.21 Total: -48.16 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 0.78 Total: -4.50 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -66.16 0.81 -65.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135313242.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.537 kcal (2) G-P(sol) polarization free energy of solvation -66.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds