Wall clock time and date at job start Tue Mar 31 2020 21:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.87150 * 2 1 4 4 N 1.46501 * 109.47317 * 59.30167 * 3 2 1 5 5 C 1.34776 * 120.00306 * 180.02562 * 4 3 2 6 6 O 1.21589 * 119.99731 * 359.97438 * 5 4 3 7 7 N 1.34781 * 120.00058 * 179.97438 * 5 4 3 8 8 C 1.40132 * 119.99702 * 175.63151 * 7 5 4 9 9 C 1.38691 * 120.07919 * 34.57232 * 8 7 5 10 10 C 1.38195 * 120.02352 * 179.97438 * 9 8 7 11 11 C 1.38546 * 120.17641 * 0.02562 * 10 9 8 12 12 F 1.35095 * 119.92702 * 179.97438 * 11 10 9 13 13 C 1.38349 * 120.14617 * 359.95088 * 11 10 9 14 14 C 1.38733 * 119.98231 * 0.02680 * 13 11 10 15 15 O 1.35776 * 120.09077 * 179.97438 * 14 13 11 16 16 C 1.34802 * 116.99694 * 354.54971 * 15 14 13 17 17 H 1.08002 * 120.00164 * 5.04827 * 16 15 14 18 18 C 1.38640 * 119.99894 * 185.05266 * 16 15 14 19 19 N 1.31572 * 119.99716 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00063 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47020 * 89.99586 * 20 18 16 22 22 H 1.48497 * 109.47163 * 209.99540 * 20 18 16 23 23 H 1.48502 * 109.47429 * 329.99851 * 20 18 16 24 24 C 1.54106 * 109.87978 * 238.98944 * 2 1 3 25 25 C 1.54809 * 104.18900 * 242.45998 * 24 2 1 26 26 C 1.54992 * 102.09336 * 20.88113 * 25 24 2 27 27 O 1.43750 * 109.87484 * 121.00960 * 2 1 3 28 28 H 1.09008 * 109.46598 * 60.70131 * 1 2 3 29 29 H 1.08996 * 109.47698 * 180.69467 * 1 2 3 30 30 H 1.09002 * 109.47145 * 300.70487 * 1 2 3 31 31 H 1.09001 * 109.47610 * 299.29709 * 3 2 1 32 32 H 1.09000 * 109.47242 * 179.29357 * 3 2 1 33 33 H 0.97004 * 119.99774 * 359.97438 * 4 3 2 34 34 H 0.97001 * 119.99828 * 355.62886 * 7 5 4 35 35 H 1.08002 * 119.98794 * 0.25368 * 9 8 7 36 36 H 1.08004 * 119.91454 * 179.97438 * 10 9 8 37 37 H 1.08000 * 120.00537 * 180.02562 * 13 11 10 38 38 H 0.97005 * 119.99783 * 180.02562 * 19 18 16 39 39 H 1.08998 * 110.48531 * 1.13707 * 24 2 1 40 40 H 1.08997 * 110.48176 * 123.64634 * 24 2 1 41 41 H 1.08997 * 110.90649 * 139.08279 * 25 24 2 42 42 H 1.08993 * 110.90559 * 262.64732 * 25 24 2 43 43 H 1.09003 * 110.62098 * 81.47638 * 26 25 24 44 44 H 1.09002 * 110.61868 * 204.31877 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4388 0.0000 4 7 1.5529 2.1378 1.1877 5 6 1.8846 3.4269 1.3992 6 8 2.5969 4.0096 0.6045 7 7 1.4268 4.0700 2.4916 8 6 1.8448 5.3804 2.7596 9 6 2.0857 6.2606 1.7152 10 6 2.4974 7.5528 1.9809 11 6 2.6713 7.9731 3.2896 12 9 3.0744 9.2372 3.5436 13 6 2.4325 7.1012 4.3369 14 6 2.0186 5.8027 4.0774 15 8 1.7841 4.9451 5.1036 16 6 2.0800 5.3803 6.3446 17 1 2.4070 6.3984 6.4962 18 6 1.9646 4.5210 7.4264 19 7 1.5658 3.2808 7.2418 20 14 2.3739 5.1242 9.1463 21 1 1.1524 5.6845 9.7781 22 1 2.8774 3.9900 9.9620 23 1 3.4174 6.1778 9.0661 24 6 2.0540 -0.7466 -1.2421 25 6 2.8357 -1.9495 -0.6601 26 6 2.2333 -2.0703 0.7629 27 8 2.0187 -0.6965 1.1587 28 1 -0.3633 0.5030 -0.8963 29 1 -0.3634 -1.0275 0.0125 30 1 -0.3633 0.5247 0.8836 31 1 1.7006 1.9515 -0.8962 32 1 3.1399 1.4313 0.0127 33 1 0.9843 1.6730 1.8214 34 1 0.8080 3.6259 3.0921 35 1 1.9472 5.9374 0.6941 36 1 2.6850 8.2366 1.1663 37 1 2.5684 7.4314 5.3562 38 1 1.4847 2.6796 7.9988 39 1 1.2237 -1.0929 -1.8575 40 1 2.7157 -0.1038 -1.8225 41 1 2.6476 -2.8529 -1.2401 42 1 3.9031 -1.7342 -0.6142 43 1 1.2876 -2.6117 0.7347 44 1 2.9355 -2.5615 1.4365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135332162.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:50 Heat of formation + Delta-G solvation = -118.286923 kcal Electronic energy + Delta-G solvation = -29226.461614 eV Core-core repulsion = 24866.388129 eV Total energy + Delta-G solvation = -4360.073486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.20029 -40.45620 -39.82727 -38.62312 -36.39361 -34.83021 -33.95290 -32.56806 -32.35989 -31.37613 -29.35273 -28.32437 -27.10068 -25.54823 -25.30223 -22.49680 -22.05679 -21.53589 -20.41197 -20.29921 -18.31554 -18.18345 -17.70374 -16.90507 -16.33996 -15.95105 -15.70410 -15.23438 -15.19317 -14.93466 -14.80086 -14.63171 -14.25762 -14.13528 -13.91124 -13.59187 -13.47028 -13.27844 -13.12567 -12.79632 -12.68763 -12.25664 -12.08604 -12.04992 -11.95628 -11.62414 -11.39830 -11.30808 -11.16669 -10.97212 -10.91965 -10.68332 -10.50646 -9.88506 -9.81648 -9.72511 -9.37685 -8.92067 -8.87683 -7.82001 -7.03010 -6.55559 -4.13285 1.91554 2.18192 2.95055 3.09030 3.10992 3.15488 3.55136 3.58650 3.88652 4.21014 4.39522 4.41827 4.48636 4.61386 4.73371 4.81872 4.89569 4.98374 5.02291 5.18634 5.24564 5.31427 5.42860 5.49738 5.51563 5.58596 5.64805 5.67624 5.74109 5.79527 5.81774 5.97623 6.09517 6.27399 6.55300 6.65320 6.74764 6.77721 6.96798 6.99290 7.13526 7.21935 7.38350 7.72496 7.88431 8.35055 8.89678 8.94216 9.52260 10.61519 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010163 B = 0.003233 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.303540 B = 8659.840438 C =11005.899931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.088 3.912 3 C 0.153 3.847 4 N -0.739 5.739 5 C 0.705 3.295 6 O -0.589 6.589 7 N -0.665 5.665 8 C 0.080 3.920 9 C -0.051 4.051 10 C -0.228 4.228 11 C 0.127 3.873 12 F -0.152 7.152 13 C -0.259 4.259 14 C 0.157 3.843 15 O -0.169 6.169 16 C -0.392 4.392 17 H 0.094 0.906 18 C 0.043 3.957 19 N -0.859 5.859 20 Si 0.942 3.058 21 H -0.272 1.272 22 H -0.277 1.277 23 H -0.266 1.266 24 C -0.143 4.143 25 C -0.155 4.155 26 C 0.045 3.955 27 O -0.359 6.359 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.401 0.599 34 H 0.411 0.589 35 H 0.143 0.857 36 H 0.122 0.878 37 H 0.142 0.858 38 H 0.271 0.729 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.380 -9.521 -14.070 17.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.048 3.952 3 C 0.028 3.972 4 N -0.396 5.396 5 C 0.406 3.594 6 O -0.468 6.468 7 N -0.311 5.311 8 C -0.015 4.015 9 C -0.072 4.072 10 C -0.249 4.249 11 C 0.107 3.893 12 F -0.131 7.131 13 C -0.280 4.280 14 C 0.101 3.899 15 O -0.072 6.072 16 C -0.468 4.468 17 H 0.111 0.889 18 C -0.162 4.162 19 N -0.493 5.493 20 Si 0.766 3.234 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.191 1.191 24 C -0.181 4.181 25 C -0.192 4.192 26 C -0.032 4.032 27 O -0.278 6.278 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.236 0.764 34 H 0.246 0.754 35 H 0.160 0.840 36 H 0.140 0.860 37 H 0.160 0.840 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.815 -9.365 -14.417 17.287 hybrid contribution -0.232 -0.065 1.440 1.460 sum -2.047 -9.430 -12.977 16.172 Atomic orbital electron populations 1.22260 0.94284 1.02526 1.03071 1.22402 0.94206 0.92338 0.86266 1.21298 0.99538 0.88489 0.87867 1.44948 1.56380 1.10772 1.27491 1.15853 0.80161 0.81228 0.82176 1.90861 1.42243 1.66693 1.46972 1.42168 1.48761 1.13778 1.26425 1.16645 1.10368 0.84223 0.90221 1.20666 0.97221 0.90637 0.98663 1.20477 1.12504 0.97555 0.94328 1.17454 0.99334 0.78779 0.93734 1.91404 1.88419 1.38055 1.95228 1.20832 1.13666 0.93909 0.99589 1.18793 0.93810 0.89501 0.87793 1.83921 1.71880 1.37616 1.13752 1.21339 1.47003 0.98479 0.79994 0.88864 1.25274 0.96407 0.94941 0.99583 1.70020 1.42536 1.04594 1.32158 0.85692 0.79068 0.78507 0.80121 1.19785 1.20197 1.19069 1.22951 1.00714 0.97200 0.97239 1.23123 1.00974 0.98459 0.96693 1.23577 0.99805 0.84500 0.95278 1.89055 1.85851 1.20596 1.32317 0.91232 0.92058 0.91488 0.90524 0.91047 0.76382 0.75380 0.83982 0.86010 0.84017 0.91893 0.90106 0.89875 0.90209 0.90295 0.92224 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 8.44 37.16 0.31 -1.07 16 2 C 0.09 0.86 0.82 -90.05 -0.07 0.78 16 3 C 0.15 1.86 4.62 -4.05 -0.02 1.84 16 4 N -0.74 -10.69 5.18 -65.23 -0.34 -11.03 16 5 C 0.71 12.91 8.41 -86.91 -0.73 12.18 16 6 O -0.59 -12.21 13.76 5.29 0.07 -12.13 16 7 N -0.66 -12.81 5.20 -14.07 -0.07 -12.89 16 8 C 0.08 1.72 6.33 -83.44 -0.53 1.20 16 9 C -0.05 -1.02 8.69 -39.43 -0.34 -1.36 16 10 C -0.23 -4.37 10.02 -39.48 -0.40 -4.76 16 11 C 0.13 2.60 7.29 -39.43 -0.29 2.31 16 12 F -0.15 -2.98 17.26 2.25 0.04 -2.94 16 13 C -0.26 -5.79 9.14 -39.36 -0.36 -6.15 16 14 C 0.16 3.72 6.66 -38.94 -0.26 3.46 16 15 O -0.17 -4.50 9.31 0.05 0.00 -4.50 16 16 C -0.39 -10.54 9.49 30.88 0.29 -10.25 16 17 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 18 C 0.04 1.13 5.49 -17.51 -0.10 1.04 16 19 N -0.86 -23.88 13.67 55.48 0.76 -23.12 16 20 Si 0.94 20.05 29.55 -169.99 -5.02 15.03 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 C -0.14 -1.04 6.28 -25.20 -0.16 -1.20 16 25 C -0.15 -1.07 7.16 -24.73 -0.18 -1.25 16 26 C 0.05 0.38 7.67 38.21 0.29 0.68 16 27 O -0.36 -4.28 10.71 -35.23 -0.38 -4.65 16 28 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.63 6.83 -51.93 -0.35 0.27 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.40 5.35 7.24 -40.82 -0.30 5.05 16 34 H 0.41 7.54 8.58 -40.82 -0.35 7.19 16 35 H 0.14 2.74 6.20 -52.49 -0.33 2.42 16 36 H 0.12 2.01 8.06 -52.48 -0.42 1.59 16 37 H 0.14 3.16 5.64 -52.49 -0.30 2.86 16 38 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.08 0.47 7.70 -51.93 -0.40 0.07 16 40 H 0.08 0.58 7.70 -51.93 -0.40 0.18 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 369.06 15.07 5.56 5.56 Total: -1.00 -31.54 369.06 -7.54 -39.09 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -5.63 Total: 14.15 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -2.53 Total: -2.56 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.35 Total: -47.04 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.30 Total: -21.29 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.04 Total: -2.94 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.54 -7.54 -39.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135332162.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.201 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds