Wall clock time and date at job start Tue Mar 31 2020 21:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.87150 * 2 1 4 4 N 1.46501 * 109.47317 * 59.30167 * 3 2 1 5 5 C 1.34776 * 120.00306 * 180.02562 * 4 3 2 6 6 O 1.21589 * 119.99731 * 359.97438 * 5 4 3 7 7 N 1.34781 * 120.00058 * 179.97438 * 5 4 3 8 8 C 1.40132 * 119.99702 * 175.63151 * 7 5 4 9 9 C 1.38691 * 120.07919 * 34.57232 * 8 7 5 10 10 C 1.38195 * 120.02352 * 179.97438 * 9 8 7 11 11 C 1.38546 * 120.17641 * 0.02562 * 10 9 8 12 12 F 1.35095 * 119.92702 * 179.97438 * 11 10 9 13 13 C 1.38349 * 120.14617 * 359.95088 * 11 10 9 14 14 C 1.38733 * 119.98231 * 0.02680 * 13 11 10 15 15 O 1.35776 * 120.09077 * 179.97438 * 14 13 11 16 16 C 1.34802 * 116.99694 * 354.54971 * 15 14 13 17 17 H 1.08002 * 120.00164 * 5.04827 * 16 15 14 18 18 C 1.38640 * 119.99894 * 185.05266 * 16 15 14 19 19 N 1.31572 * 119.99716 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00063 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47020 * 89.99586 * 20 18 16 22 22 H 1.48497 * 109.47163 * 209.99540 * 20 18 16 23 23 H 1.48502 * 109.47429 * 329.99851 * 20 18 16 24 24 C 1.54106 * 109.87978 * 238.98944 * 2 1 3 25 25 C 1.54809 * 104.18900 * 242.45998 * 24 2 1 26 26 C 1.54992 * 102.09336 * 20.88113 * 25 24 2 27 27 O 1.43750 * 109.87484 * 121.00960 * 2 1 3 28 28 H 1.09008 * 109.46598 * 60.70131 * 1 2 3 29 29 H 1.08996 * 109.47698 * 180.69467 * 1 2 3 30 30 H 1.09002 * 109.47145 * 300.70487 * 1 2 3 31 31 H 1.09001 * 109.47610 * 299.29709 * 3 2 1 32 32 H 1.09000 * 109.47242 * 179.29357 * 3 2 1 33 33 H 0.97004 * 119.99774 * 359.97438 * 4 3 2 34 34 H 0.97001 * 119.99828 * 355.62886 * 7 5 4 35 35 H 1.08002 * 119.98794 * 0.25368 * 9 8 7 36 36 H 1.08004 * 119.91454 * 179.97438 * 10 9 8 37 37 H 1.08000 * 120.00537 * 180.02562 * 13 11 10 38 38 H 0.97005 * 119.99783 * 180.02562 * 19 18 16 39 39 H 1.08998 * 110.48531 * 1.13707 * 24 2 1 40 40 H 1.08997 * 110.48176 * 123.64634 * 24 2 1 41 41 H 1.08997 * 110.90649 * 139.08279 * 25 24 2 42 42 H 1.08993 * 110.90559 * 262.64732 * 25 24 2 43 43 H 1.09003 * 110.62098 * 81.47638 * 26 25 24 44 44 H 1.09002 * 110.61868 * 204.31877 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4388 0.0000 4 7 1.5529 2.1378 1.1877 5 6 1.8846 3.4269 1.3992 6 8 2.5969 4.0096 0.6045 7 7 1.4268 4.0700 2.4916 8 6 1.8448 5.3804 2.7596 9 6 2.0857 6.2606 1.7152 10 6 2.4974 7.5528 1.9809 11 6 2.6713 7.9731 3.2896 12 9 3.0744 9.2372 3.5436 13 6 2.4325 7.1012 4.3369 14 6 2.0186 5.8027 4.0774 15 8 1.7841 4.9451 5.1036 16 6 2.0800 5.3803 6.3446 17 1 2.4070 6.3984 6.4962 18 6 1.9646 4.5210 7.4264 19 7 1.5658 3.2808 7.2418 20 14 2.3739 5.1242 9.1463 21 1 1.1524 5.6845 9.7781 22 1 2.8774 3.9900 9.9620 23 1 3.4174 6.1778 9.0661 24 6 2.0540 -0.7466 -1.2421 25 6 2.8357 -1.9495 -0.6601 26 6 2.2333 -2.0703 0.7629 27 8 2.0187 -0.6965 1.1587 28 1 -0.3633 0.5030 -0.8963 29 1 -0.3634 -1.0275 0.0125 30 1 -0.3633 0.5247 0.8836 31 1 1.7006 1.9515 -0.8962 32 1 3.1399 1.4313 0.0127 33 1 0.9843 1.6730 1.8214 34 1 0.8080 3.6259 3.0921 35 1 1.9472 5.9374 0.6941 36 1 2.6850 8.2366 1.1663 37 1 2.5684 7.4314 5.3562 38 1 1.4847 2.6796 7.9988 39 1 1.2237 -1.0929 -1.8575 40 1 2.7157 -0.1038 -1.8225 41 1 2.6476 -2.8529 -1.2401 42 1 3.9031 -1.7342 -0.6142 43 1 1.2876 -2.6117 0.7347 44 1 2.9355 -2.5615 1.4365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135332162.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:49 Heat of formation + Delta-G solvation = -139.140787 kcal Electronic energy + Delta-G solvation = -29227.365906 eV Core-core repulsion = 24866.388129 eV Total energy + Delta-G solvation = -4360.977777 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.81841 -41.79410 -40.92424 -40.19669 -38.11018 -36.01729 -35.53863 -34.30562 -33.34416 -32.21990 -31.05788 -29.87325 -27.93987 -27.38617 -26.31561 -24.09426 -23.30647 -22.67050 -21.76218 -21.18463 -20.14410 -19.69203 -19.27116 -18.38895 -17.32841 -17.10756 -16.97312 -16.85094 -16.54737 -16.47115 -16.04926 -15.97267 -15.81645 -15.44862 -15.23108 -15.12100 -14.84453 -14.74121 -14.16794 -13.99524 -13.82280 -13.59504 -13.42723 -13.37269 -13.00921 -12.73001 -12.60619 -12.56687 -12.33665 -12.15102 -12.02486 -11.88192 -11.66502 -11.55401 -11.33255 -11.01104 -10.81968 -10.64135 -10.15179 -9.54026 -8.72857 -8.50628 -6.16733 0.22311 0.47577 1.36557 1.43848 1.52199 1.59105 2.06252 2.14272 2.69558 2.83148 3.02237 3.20034 3.23766 3.46968 3.52491 3.73713 3.84251 3.95784 4.07554 4.14564 4.17577 4.37453 4.39656 4.53784 4.58128 4.66335 4.70529 4.82643 4.85640 4.95414 4.95681 4.96869 5.02653 5.09862 5.22388 5.23227 5.28995 5.31073 5.33839 5.43741 5.58074 5.89509 5.94400 6.01865 6.08727 6.92212 6.93897 7.45290 7.64091 8.70109 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010163 B = 0.003233 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.303540 B = 8659.840438 C =11005.899931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.089 3.911 3 C 0.149 3.851 4 N -0.725 5.725 5 C 0.703 3.297 6 O -0.613 6.613 7 N -0.667 5.667 8 C 0.079 3.921 9 C -0.051 4.051 10 C -0.202 4.202 11 C 0.122 3.878 12 F -0.144 7.144 13 C -0.264 4.264 14 C 0.130 3.870 15 O -0.204 6.204 16 C -0.417 4.417 17 H 0.100 0.900 18 C -0.010 4.010 19 N -0.906 5.906 20 Si 1.012 2.988 21 H -0.262 1.262 22 H -0.271 1.271 23 H -0.258 1.258 24 C -0.139 4.139 25 C -0.150 4.150 26 C 0.036 3.964 27 O -0.395 6.395 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.407 0.593 34 H 0.412 0.588 35 H 0.154 0.846 36 H 0.159 0.841 37 H 0.136 0.864 38 H 0.274 0.726 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.420 -9.414 -15.662 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.049 3.951 3 C 0.025 3.975 4 N -0.381 5.381 5 C 0.403 3.597 6 O -0.494 6.494 7 N -0.314 5.314 8 C -0.016 4.016 9 C -0.072 4.072 10 C -0.222 4.222 11 C 0.102 3.898 12 F -0.123 7.123 13 C -0.285 4.285 14 C 0.076 3.924 15 O -0.109 6.109 16 C -0.492 4.492 17 H 0.117 0.883 18 C -0.209 4.209 19 N -0.542 5.542 20 Si 0.832 3.168 21 H -0.187 1.187 22 H -0.196 1.196 23 H -0.182 1.182 24 C -0.177 4.177 25 C -0.187 4.187 26 C -0.040 4.040 27 O -0.315 6.315 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.243 0.757 34 H 0.248 0.752 35 H 0.172 0.828 36 H 0.177 0.823 37 H 0.154 0.846 38 H 0.083 0.917 39 H 0.121 0.879 40 H 0.104 0.896 41 H 0.122 0.878 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.865 -9.268 -16.055 18.632 hybrid contribution -0.195 -0.035 1.697 1.708 sum -2.059 -9.303 -14.358 17.232 Atomic orbital electron populations 1.22253 0.93199 1.03351 1.03097 1.22475 0.94938 0.90706 0.86995 1.21530 0.98610 0.90251 0.87136 1.44970 1.55526 1.09424 1.28173 1.15982 0.79959 0.82170 0.81551 1.90825 1.43355 1.67532 1.47673 1.42205 1.48917 1.13427 1.26836 1.16924 1.09430 0.85391 0.89892 1.20870 0.96906 0.90724 0.98662 1.20881 1.09173 0.97491 0.94666 1.17443 0.99663 0.78902 0.93802 1.91425 1.88295 1.37343 1.95235 1.20913 1.13508 0.93981 1.00095 1.19152 0.95063 0.89978 0.88171 1.83902 1.74012 1.38815 1.14171 1.21756 1.47702 0.99103 0.80670 0.88318 1.26403 0.95991 0.94999 1.03541 1.70137 1.44636 1.05993 1.33479 0.84669 0.79243 0.78194 0.74703 1.18665 1.19590 1.18231 1.22979 1.01533 0.97000 0.96216 1.23115 1.00378 0.99348 0.95870 1.23781 1.00723 0.83144 0.96307 1.89016 1.86230 1.22413 1.33816 0.89808 0.90802 0.92880 0.89328 0.92788 0.75712 0.75200 0.82849 0.82344 0.84622 0.91682 0.87907 0.89614 0.87809 0.91001 0.90864 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 8.44 71.98 0.61 -1.87 16 2 C 0.09 1.62 0.82 -10.42 -0.01 1.62 16 3 C 0.15 3.55 4.62 86.38 0.40 3.95 16 4 N -0.73 -21.07 5.18 -478.54 -2.48 -23.55 16 5 C 0.70 25.84 8.41 179.05 1.51 27.34 16 6 O -0.61 -25.15 13.76 -4.00 -0.06 -25.20 16 7 N -0.67 -26.22 5.20 -316.69 -1.65 -27.87 16 8 C 0.08 3.42 6.33 38.22 0.24 3.66 16 9 C -0.05 -1.95 8.69 22.37 0.19 -1.76 16 10 C -0.20 -7.20 10.02 22.33 0.22 -6.98 16 11 C 0.12 4.81 7.29 22.37 0.16 4.98 16 12 F -0.14 -5.35 17.26 44.97 0.78 -4.57 16 13 C -0.26 -11.89 9.14 22.41 0.20 -11.69 16 14 C 0.13 6.30 6.66 22.68 0.15 6.45 16 15 O -0.20 -11.34 9.31 -22.75 -0.21 -11.55 16 16 C -0.42 -23.16 9.49 67.92 0.64 -22.52 16 17 H 0.10 5.15 5.20 -2.91 -0.02 5.14 16 18 C -0.01 -0.53 5.49 84.83 0.47 -0.07 16 19 N -0.91 -52.16 13.67 21.61 0.30 -51.86 16 20 Si 1.01 41.61 29.55 68.60 2.03 43.64 16 21 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 22 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 23 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 24 C -0.14 -1.72 6.28 31.59 0.20 -1.52 16 25 C -0.15 -1.78 7.16 31.89 0.23 -1.55 16 26 C 0.04 0.58 7.67 72.66 0.56 1.14 16 27 O -0.39 -9.29 10.71 -148.98 -1.60 -10.89 16 28 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 0.96 6.83 -2.39 -0.02 0.94 16 31 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.41 11.05 7.24 -92.71 -0.67 10.37 16 34 H 0.41 15.78 8.58 -92.71 -0.80 14.98 16 35 H 0.15 5.62 6.20 -2.91 -0.02 5.61 16 36 H 0.16 4.52 8.06 -2.91 -0.02 4.49 16 37 H 0.14 6.18 5.64 -2.91 -0.02 6.16 16 38 H 0.27 14.55 8.31 -92.70 -0.77 13.78 16 39 H 0.10 0.84 7.70 -2.39 -0.02 0.82 16 40 H 0.09 1.03 7.70 -2.39 -0.02 1.01 16 41 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 44 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -69.57 369.06 2.49 -67.09 By element: Atomic # 1 Polarization: 43.99 SS G_CDS: -0.40 Total: 43.59 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 5.78 Total: 1.18 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -3.83 Total: -103.28 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -1.86 Total: -47.64 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.78 Total: -4.57 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -69.57 2.49 -67.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135332162.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.055 kcal (2) G-P(sol) polarization free energy of solvation -69.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds