Wall clock time and date at job start Tue Mar 31 2020 21:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.99202 * 2 1 4 4 N 1.46503 * 109.47417 * 306.08631 * 3 2 1 5 5 C 1.34771 * 120.00110 * 180.02562 * 4 3 2 6 6 O 1.21593 * 120.00093 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99994 * 180.02562 * 5 4 3 8 8 C 1.40138 * 120.00186 * 175.62537 * 7 5 4 9 9 C 1.38694 * 120.07271 * 34.59216 * 8 7 5 10 10 C 1.38206 * 120.02164 * 179.76408 * 9 8 7 11 11 C 1.38545 * 120.16976 * 0.51932 * 10 9 8 12 12 F 1.35097 * 119.92053 * 179.76293 * 11 10 9 13 13 C 1.38346 * 120.15466 * 359.73594 * 11 10 9 14 14 C 1.38736 * 119.97456 * 0.02562 * 13 11 10 15 15 O 1.35777 * 120.08511 * 179.97438 * 14 13 11 16 16 C 1.34805 * 117.00063 * 5.43947 * 15 14 13 17 17 H 1.07997 * 119.99933 * 354.94779 * 16 15 14 18 18 C 1.38640 * 120.00033 * 174.94917 * 16 15 14 19 19 N 1.31563 * 120.00061 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99872 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46956 * 90.00049 * 20 18 16 22 22 H 1.48497 * 109.47080 * 210.00075 * 20 18 16 23 23 H 1.48498 * 109.47469 * 330.00329 * 20 18 16 24 24 C 1.54100 * 109.87789 * 121.09111 * 2 1 3 25 25 C 1.54814 * 104.18945 * 117.39163 * 24 2 1 26 26 C 1.54997 * 102.08870 * 339.11603 * 25 24 2 27 27 O 1.43749 * 109.87092 * 238.91843 * 2 1 3 28 28 H 1.09007 * 109.46659 * 298.91637 * 1 2 3 29 29 H 1.08995 * 109.46921 * 58.90763 * 1 2 3 30 30 H 1.08997 * 109.47518 * 178.91411 * 1 2 3 31 31 H 1.08990 * 109.47621 * 66.08902 * 3 2 1 32 32 H 1.09007 * 109.47266 * 186.08939 * 3 2 1 33 33 H 0.96998 * 119.99883 * 359.97438 * 4 3 2 34 34 H 0.96999 * 120.00412 * 355.62402 * 7 5 4 35 35 H 1.08004 * 119.99349 * 0.02696 * 9 8 7 36 36 H 1.07995 * 119.91075 * 180.25285 * 10 9 8 37 37 H 1.07999 * 120.00858 * 180.02562 * 13 11 10 38 38 H 0.97004 * 120.00416 * 180.02562 * 19 18 16 39 39 H 1.09003 * 110.47916 * 236.06117 * 24 2 1 40 40 H 1.09001 * 110.48803 * 358.70827 * 24 2 1 41 41 H 1.08998 * 110.90426 * 97.31013 * 25 24 2 42 42 H 1.08995 * 110.90543 * 220.91822 * 25 24 2 43 43 H 1.09002 * 110.61459 * 278.52219 * 26 25 24 44 44 H 1.09004 * 110.61755 * 155.53005 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0531 1.4377 0.0000 4 7 1.4556 2.1749 -1.1162 5 6 1.7727 3.4695 -1.3155 6 8 2.5544 4.0259 -0.5686 7 7 1.2226 4.1477 -2.3420 8 6 1.4803 5.5166 -2.4957 9 6 2.7207 6.0332 -2.1519 10 6 2.9753 7.3825 -2.3085 11 6 1.9903 8.2247 -2.7985 12 9 2.2431 9.5437 -2.9450 13 6 0.7487 7.7180 -3.1387 14 6 0.4881 6.3636 -2.9887 15 8 -0.7298 5.8640 -3.3213 16 6 -1.6038 6.7140 -3.8965 17 1 -1.3525 7.7594 -3.9989 18 6 -2.8252 6.2464 -4.3566 19 7 -3.1315 4.9731 -4.2313 20 14 -4.0364 7.4245 -5.1529 21 1 -3.7866 7.4773 -6.6159 22 1 -5.4223 6.9526 -4.9041 23 1 -3.8633 8.7801 -4.5720 24 6 2.0540 -0.7484 1.2410 25 6 2.8324 -1.9526 0.6574 26 6 2.2279 -2.0714 -0.7649 27 8 2.0187 -0.6979 -1.1578 28 1 -0.3633 0.4970 0.8996 29 1 -0.3633 0.5307 -0.8800 30 1 -0.3634 -1.0274 -0.0195 31 1 1.7860 1.9216 0.9394 32 1 3.1377 1.4298 -0.1090 33 1 0.8323 1.7309 -1.7122 34 1 0.6483 3.6884 -2.9746 35 1 3.4893 5.3801 -1.7658 36 1 3.9431 7.7822 -2.0441 37 1 -0.0172 8.3765 -3.5208 38 1 -3.9859 4.6457 -4.5535 39 1 2.7198 -0.1080 1.8196 40 1 1.2238 -1.0932 1.8574 41 1 3.9003 -1.7392 0.6096 42 1 2.6432 -2.8559 1.2372 43 1 1.2812 -2.6108 -0.7357 44 1 2.9293 -2.5613 -1.4404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135332182.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:54 Heat of formation + Delta-G solvation = -118.135251 kcal Electronic energy + Delta-G solvation = -29181.182943 eV Core-core repulsion = 24821.116034 eV Total energy + Delta-G solvation = -4360.066909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.20583 -40.48276 -39.85035 -38.63818 -36.40732 -34.87368 -33.95923 -32.57532 -32.37950 -31.35863 -29.35974 -28.32526 -27.13309 -25.56254 -25.31220 -22.50663 -22.08066 -21.54991 -20.39083 -20.32513 -18.33803 -18.19900 -17.72151 -16.91427 -16.37358 -16.01104 -15.62138 -15.28681 -15.19735 -14.96317 -14.83007 -14.59488 -14.26470 -14.19664 -13.95460 -13.59294 -13.45376 -13.20586 -13.16439 -12.79721 -12.67917 -12.28452 -12.10430 -12.05368 -11.96249 -11.63121 -11.42518 -11.32474 -11.15761 -10.97646 -10.91719 -10.69116 -10.53052 -9.91847 -9.82635 -9.72094 -9.39567 -8.93739 -8.89223 -7.82252 -7.04830 -6.57779 -4.15453 1.90749 2.17518 2.96266 3.07963 3.09494 3.13713 3.48438 3.59205 3.87327 4.19578 4.39090 4.40477 4.48623 4.59793 4.71067 4.81923 4.90610 4.96942 4.99000 5.16731 5.24215 5.33171 5.41103 5.47498 5.52740 5.60349 5.64620 5.66037 5.72211 5.78739 5.83220 6.01796 6.08916 6.26560 6.55248 6.64677 6.72484 6.76084 6.95883 6.98662 7.12600 7.20892 7.37142 7.71797 7.86682 8.34072 8.87853 8.93176 9.50724 10.59324 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010921 B = 0.003075 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.213402 B = 9104.234605 C =11343.766874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.089 3.911 3 C 0.153 3.847 4 N -0.740 5.740 5 C 0.705 3.295 6 O -0.589 6.589 7 N -0.665 5.665 8 C 0.080 3.920 9 C -0.050 4.050 10 C -0.228 4.228 11 C 0.127 3.873 12 F -0.152 7.152 13 C -0.258 4.258 14 C 0.157 3.843 15 O -0.169 6.169 16 C -0.392 4.392 17 H 0.094 0.906 18 C 0.043 3.957 19 N -0.860 5.860 20 Si 0.942 3.058 21 H -0.272 1.272 22 H -0.277 1.277 23 H -0.266 1.266 24 C -0.144 4.144 25 C -0.155 4.155 26 C 0.045 3.955 27 O -0.362 6.362 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.401 0.599 34 H 0.411 0.589 35 H 0.143 0.857 36 H 0.122 0.878 37 H 0.142 0.858 38 H 0.271 0.729 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.703 -13.118 7.392 16.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 C 0.028 3.972 4 N -0.397 5.397 5 C 0.406 3.594 6 O -0.468 6.468 7 N -0.311 5.311 8 C -0.015 4.015 9 C -0.071 4.071 10 C -0.248 4.248 11 C 0.107 3.893 12 F -0.131 7.131 13 C -0.279 4.279 14 C 0.101 3.899 15 O -0.071 6.071 16 C -0.468 4.468 17 H 0.111 0.889 18 C -0.162 4.162 19 N -0.494 5.494 20 Si 0.766 3.234 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.191 1.191 24 C -0.182 4.182 25 C -0.193 4.193 26 C -0.031 4.031 27 O -0.282 6.282 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.236 0.764 34 H 0.247 0.753 35 H 0.161 0.839 36 H 0.140 0.860 37 H 0.160 0.840 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.114 -12.905 7.852 17.147 hybrid contribution -1.310 0.323 -0.801 1.570 sum 6.803 -12.582 7.051 15.947 Atomic orbital electron populations 1.22266 0.94061 1.02561 1.03406 1.22407 0.94350 0.92241 0.86072 1.21286 0.98236 0.87934 0.89725 1.45011 1.50751 1.10292 1.33687 1.15862 0.81277 0.81181 0.81126 1.90862 1.38869 1.68304 1.48734 1.42178 1.52350 1.07938 1.28669 1.16656 0.92718 0.81703 1.10469 1.20684 0.94646 0.94527 0.97260 1.20487 0.99519 0.93615 1.11195 1.17455 0.94442 0.76976 1.00443 1.91405 1.94761 1.33160 1.93773 1.20834 0.97642 0.95979 1.13462 1.18825 0.85857 0.90277 0.94977 1.83936 1.17528 1.38230 1.67457 1.21349 0.95822 0.91450 1.38180 0.88865 1.25266 0.97171 0.96952 0.96802 1.70009 1.23104 1.13248 1.43089 0.85691 0.78914 0.79445 0.79338 1.19763 1.20213 1.19082 1.22963 1.00773 0.97132 0.97304 1.23131 1.00881 0.98538 0.96722 1.23548 0.99799 0.84493 0.95303 1.88975 1.85924 1.20469 1.32786 0.91054 0.91333 0.92021 0.90432 0.90988 0.76385 0.75331 0.83946 0.85989 0.84004 0.91902 0.89855 0.90009 0.90349 0.90209 0.92180 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 8.39 37.16 0.31 -1.24 16 2 C 0.09 0.87 0.86 -90.05 -0.08 0.79 16 3 C 0.15 1.85 4.66 -4.04 -0.02 1.83 16 4 N -0.74 -10.62 5.23 -65.23 -0.34 -10.96 16 5 C 0.70 12.83 8.41 -86.92 -0.73 12.10 16 6 O -0.59 -12.15 13.76 5.28 0.07 -12.07 16 7 N -0.66 -12.78 5.20 -14.07 -0.07 -12.85 16 8 C 0.08 1.70 6.33 -83.44 -0.53 1.17 16 9 C -0.05 -1.01 8.69 -39.42 -0.34 -1.35 16 10 C -0.23 -4.35 10.02 -39.48 -0.40 -4.75 16 11 C 0.13 2.59 7.29 -39.43 -0.29 2.30 16 12 F -0.15 -2.97 17.26 2.25 0.04 -2.93 16 13 C -0.26 -5.74 9.14 -39.36 -0.36 -6.10 16 14 C 0.16 3.68 6.66 -38.94 -0.26 3.42 16 15 O -0.17 -4.45 9.32 0.04 0.00 -4.45 16 16 C -0.39 -10.42 9.49 30.88 0.29 -10.13 16 17 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 18 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 19 N -0.86 -23.55 13.67 55.48 0.76 -22.79 16 20 Si 0.94 19.83 29.55 -169.99 -5.02 14.81 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 C -0.14 -1.04 6.27 -25.20 -0.16 -1.20 16 25 C -0.16 -0.99 7.15 -24.72 -0.18 -1.17 16 26 C 0.05 0.35 7.66 38.21 0.29 0.64 16 27 O -0.36 -3.99 10.84 -35.23 -0.38 -4.37 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.73 6.53 -51.93 -0.34 0.39 16 30 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.40 5.27 6.96 -40.82 -0.28 4.99 16 34 H 0.41 7.57 8.59 -40.82 -0.35 7.22 16 35 H 0.14 2.78 6.19 -52.48 -0.32 2.45 16 36 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 37 H 0.14 3.14 5.64 -52.49 -0.30 2.85 16 38 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.08 0.58 7.70 -51.93 -0.40 0.18 16 40 H 0.08 0.50 7.70 -51.93 -0.40 0.10 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.41 8.11 -51.93 -0.42 -0.01 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 368.62 15.07 5.56 5.56 Total: -1.00 -30.91 368.62 -7.53 -38.44 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -5.60 Total: 14.29 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -2.53 Total: -2.66 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.34 Total: -46.61 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.31 Total: -20.90 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.04 Total: -2.93 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.91 -7.53 -38.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135332182.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.698 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds