Wall clock time and date at job start Tue Mar 31 2020 20:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86802 * 119.99976 * 2 1 4 4 H 1.48504 * 109.46750 * 269.99619 * 3 2 1 5 5 H 1.48494 * 109.47065 * 29.99751 * 3 2 1 6 6 H 1.48497 * 109.47326 * 149.99900 * 3 2 1 7 7 C 1.38953 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99804 * 180.02562 * 7 2 1 9 9 N 1.37090 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99973 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00126 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00009 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47232 * 179.97438 * 12 10 9 14 14 C 1.39954 * 120.00090 * 179.97438 * 13 12 10 15 15 C 1.38723 * 120.07512 * 0.04206 * 14 13 12 16 16 C 1.38407 * 119.95371 * 179.97438 * 15 14 13 17 17 F 1.35102 * 119.94290 * 180.25518 * 16 15 14 18 18 C 1.38455 * 120.11107 * 359.97438 * 16 15 14 19 19 C 1.38288 * 120.15486 * 359.97438 * 18 16 15 20 20 C 1.38478 * 120.04042 * 0.04142 * 19 18 16 21 21 O 1.36056 * 120.05277 * 179.97438 * 20 19 18 22 22 C 1.42893 * 117.00205 * 0.02562 * 21 20 19 23 23 C 1.53003 * 109.47283 * 180.02562 * 22 21 20 24 24 H 1.09002 * 109.82342 * 305.56631 * 23 22 21 25 25 C 1.54380 * 109.83204 * 184.58323 * 23 22 21 26 26 C 1.55299 * 102.25703 * 219.12845 * 25 23 22 27 27 C 1.54951 * 100.94185 * 34.13386 * 26 25 23 28 28 O 1.43237 * 109.83171 * 66.45135 * 23 22 21 29 29 H 0.97004 * 120.00341 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00174 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.47083 * 59.99445 * 12 10 9 32 32 H 1.09004 * 109.46744 * 299.99380 * 12 10 9 33 33 H 0.97000 * 120.00247 * 359.97438 * 13 12 10 34 34 H 1.07994 * 120.02187 * 359.97438 * 15 14 13 35 35 H 1.07999 * 119.92067 * 179.97438 * 18 16 15 36 36 H 1.07998 * 119.97656 * 180.02562 * 19 18 16 37 37 H 1.09003 * 109.47111 * 299.99406 * 22 21 20 38 38 H 1.08998 * 109.47485 * 59.99996 * 22 21 20 39 39 H 1.09001 * 110.84791 * 337.32116 * 25 23 22 40 40 H 1.09004 * 110.84645 * 100.93617 * 25 23 22 41 41 H 1.09000 * 111.12506 * 276.21959 * 26 25 23 42 42 H 1.09004 * 111.12833 * 152.04814 * 26 25 23 43 43 H 1.09001 * 110.31286 * 204.64312 * 27 26 25 44 44 H 1.09000 * 110.39310 * 82.50940 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2438 -4.8630 0.0010 13 7 2.1957 -5.9765 0.0017 14 6 1.7292 -7.2960 0.0019 15 6 0.3657 -7.5513 0.0005 16 6 -0.0929 -8.8571 0.0002 17 9 -1.4209 -9.1055 -0.0064 18 6 0.8070 -9.9093 0.0007 19 6 2.1672 -9.6601 0.0010 20 6 2.6330 -8.3560 0.0017 21 8 3.9713 -8.1105 0.0025 22 6 4.8391 -9.2456 0.0021 23 6 6.2949 -8.7747 0.0038 24 1 6.4637 -8.0926 -0.8295 25 6 7.2389 -9.9907 -0.1127 26 6 8.3943 -9.6046 0.8505 27 6 7.6184 -8.8288 1.9445 28 8 6.5905 -8.1142 1.2400 29 1 -0.4851 0.8401 -0.0004 30 1 0.3534 -2.3906 -0.0002 31 1 0.6181 -4.9209 -0.8896 32 1 0.6162 -4.9205 0.8904 33 1 3.1494 -5.7993 0.0021 34 1 -0.3375 -6.7316 -0.0003 35 1 0.4458 -10.9271 0.0008 36 1 2.8666 -10.4830 0.0010 37 1 4.6512 -9.8470 0.8916 38 1 4.6521 -9.8457 -0.8884 39 1 6.7420 -10.9011 0.2228 40 1 7.6052 -10.1011 -1.1334 41 1 9.1213 -8.9619 0.3540 42 1 8.8744 -10.4917 1.2637 43 1 8.2815 -8.1311 2.4560 44 1 7.1751 -9.5218 2.6596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176920445.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:42 Heat of formation + Delta-G solvation = -137.763253 kcal Electronic energy + Delta-G solvation = -28551.086411 eV Core-core repulsion = 24190.168368 eV Total energy + Delta-G solvation = -4360.918043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.71413 -40.38002 -39.53853 -38.40448 -37.15980 -34.99582 -33.92114 -32.54022 -31.40355 -31.23695 -30.00323 -29.15249 -26.66136 -26.10512 -24.45902 -22.63328 -22.06915 -21.85989 -21.06529 -19.45278 -18.36547 -18.01489 -17.65133 -17.29445 -16.79364 -16.17840 -15.87915 -15.71581 -15.27762 -15.07703 -14.94749 -14.69421 -14.65020 -14.45599 -14.23156 -13.86448 -13.69933 -13.60315 -13.08019 -12.75266 -12.74654 -12.21006 -12.11854 -12.01322 -11.98636 -11.65601 -11.60060 -11.55132 -11.25148 -11.11635 -11.00904 -10.79436 -10.43555 -10.28691 -9.98316 -9.73386 -9.60157 -8.58600 -8.43040 -8.07397 -7.04358 -6.49246 -3.90761 1.28681 1.49375 3.02733 3.13815 3.23742 3.29279 3.55328 3.60178 3.71108 3.78278 4.07861 4.14302 4.36556 4.45785 4.51083 4.72613 4.77997 4.86621 4.88805 4.91966 4.99511 5.09058 5.18611 5.20569 5.28122 5.32556 5.38176 5.46603 5.49658 5.60377 5.71666 5.73138 5.80359 5.90045 6.02023 6.11676 6.21721 6.27927 6.76629 6.82850 7.16340 7.48728 7.59358 7.95475 8.12278 8.48836 9.07901 9.41919 9.90766 10.67895 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008441 B = 0.002948 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3316.302462 B = 9495.709341 C =12605.507690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.303 4.303 8 H 0.105 0.895 9 N -0.552 5.552 10 C 0.430 3.570 11 O -0.589 6.589 12 C 0.109 3.891 13 N -0.711 5.711 14 C 0.239 3.761 15 C -0.216 4.216 16 C 0.115 3.885 17 F -0.144 7.144 18 C -0.188 4.188 19 C -0.138 4.138 20 C 0.045 3.955 21 O -0.302 6.302 22 C 0.055 3.945 23 C 0.081 3.919 24 H 0.093 0.907 25 C -0.147 4.147 26 C -0.156 4.156 27 C 0.045 3.955 28 O -0.363 6.363 29 H 0.274 0.726 30 H 0.395 0.605 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.421 0.579 34 H 0.141 0.859 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.150 -23.202 0.166 24.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.187 5.187 10 C 0.216 3.784 11 O -0.475 6.475 12 C -0.019 4.019 13 N -0.341 5.341 14 C 0.131 3.869 15 C -0.241 4.241 16 C 0.095 3.905 17 F -0.122 7.122 18 C -0.209 4.209 19 C -0.157 4.157 20 C -0.004 4.004 21 O -0.216 6.216 22 C -0.021 4.021 23 C 0.023 3.977 24 H 0.111 0.889 25 C -0.185 4.185 26 C -0.193 4.193 27 C -0.032 4.032 28 O -0.282 6.282 29 H 0.083 0.917 30 H 0.228 0.772 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.261 0.739 34 H 0.159 0.841 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.660 -22.448 0.245 24.062 hybrid contribution -0.168 0.399 -0.057 0.436 sum 8.492 -22.049 0.188 23.629 Atomic orbital electron populations 1.69609 1.05992 1.28453 1.49694 1.25304 0.95663 0.99875 0.96890 0.85820 0.79269 0.80526 0.78477 1.20288 1.20815 1.19300 1.19730 0.93474 0.82017 1.48033 0.87720 1.41787 1.09364 1.04456 1.63132 1.19698 0.88360 0.84877 0.85489 1.90530 1.13697 1.86680 1.56600 1.21014 0.92192 0.86598 1.02090 1.44490 1.10357 1.00295 1.78997 1.16891 0.90469 0.83928 0.95607 1.20371 0.93809 0.96260 1.13643 1.17207 0.77123 0.93206 1.02978 1.91466 1.31623 1.95067 1.94071 1.20509 0.92254 0.98321 1.09852 1.20690 0.95740 0.94617 1.04701 1.18398 0.82968 0.92294 1.06720 1.86116 1.12748 1.33174 1.89533 1.23183 0.89313 0.88219 1.01417 1.22791 0.91580 0.94363 0.88932 0.88886 1.23099 0.95934 0.97909 1.01550 1.23278 0.98081 1.01136 0.96818 1.23439 0.89430 0.95651 0.94632 1.88629 1.56969 1.50098 1.32470 0.91651 0.77151 0.90448 0.90448 0.73887 0.84077 0.85302 0.85090 0.91835 0.91247 0.90153 0.89366 0.90030 0.89741 0.89499 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.10 13.05 55.50 0.72 -23.38 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.30 -8.38 9.68 -14.94 -0.14 -8.52 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.55 -13.83 5.29 -10.96 -0.06 -13.89 16 10 C 0.43 10.13 7.85 -10.98 -0.09 10.04 16 11 O -0.59 -15.94 15.24 5.55 0.08 -15.85 16 12 C 0.11 1.98 5.40 -5.20 -0.03 1.95 16 13 N -0.71 -12.78 5.70 -59.68 -0.34 -13.12 16 14 C 0.24 3.79 6.67 -83.57 -0.56 3.23 16 15 C -0.22 -3.15 9.29 -39.34 -0.37 -3.52 16 16 C 0.11 1.57 7.29 -39.44 -0.29 1.28 16 17 F -0.14 -1.99 17.26 2.25 0.04 -1.95 16 18 C -0.19 -2.24 10.02 -39.48 -0.40 -2.64 16 19 C -0.14 -1.62 9.03 -39.47 -0.36 -1.98 16 20 C 0.04 0.65 6.70 -39.10 -0.26 0.39 16 21 O -0.30 -4.42 9.37 -22.48 -0.21 -4.63 16 22 C 0.05 0.56 4.27 37.16 0.16 0.72 16 23 C 0.08 0.82 3.81 -26.01 -0.10 0.72 16 24 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 25 C -0.15 -0.92 6.54 -24.79 -0.16 -1.08 16 26 C -0.16 -0.96 7.16 -24.48 -0.18 -1.13 16 27 C 0.05 0.39 7.78 38.19 0.30 0.69 16 28 O -0.36 -4.68 11.00 -37.80 -0.42 -5.09 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 31 H 0.08 1.26 7.95 -51.93 -0.41 0.84 16 32 H 0.08 1.27 7.95 -51.93 -0.41 0.85 16 33 H 0.42 8.43 6.80 -40.82 -0.28 8.15 16 34 H 0.14 1.94 6.74 -52.49 -0.35 1.58 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.13 1.15 6.29 -52.49 -0.33 0.82 16 37 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 38 H 0.07 0.55 7.66 -51.93 -0.40 0.15 16 39 H 0.08 0.40 7.85 -51.93 -0.41 -0.01 16 40 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 373.97 15.07 5.64 5.64 Total: -1.00 -32.29 373.97 -7.91 -40.20 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -5.78 Total: 15.53 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -2.56 Total: 0.73 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.33 Total: -50.39 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.54 Total: -25.58 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.29 -7.91 -40.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176920445.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.562 kcal (2) G-P(sol) polarization free energy of solvation -32.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds