Wall clock time and date at job start Tue Mar 31 2020 20:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86802 * 119.99976 * 2 1 4 4 H 1.48504 * 109.46750 * 269.99619 * 3 2 1 5 5 H 1.48494 * 109.47065 * 29.99751 * 3 2 1 6 6 H 1.48497 * 109.47326 * 149.99900 * 3 2 1 7 7 C 1.38953 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99804 * 180.02562 * 7 2 1 9 9 N 1.37090 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99973 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00126 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00009 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47232 * 179.97438 * 12 10 9 14 14 C 1.39954 * 120.00090 * 179.97438 * 13 12 10 15 15 C 1.38723 * 120.07512 * 0.04206 * 14 13 12 16 16 C 1.38407 * 119.95371 * 179.97438 * 15 14 13 17 17 F 1.35102 * 119.94290 * 180.25518 * 16 15 14 18 18 C 1.38455 * 120.11107 * 359.97438 * 16 15 14 19 19 C 1.38288 * 120.15486 * 359.97438 * 18 16 15 20 20 C 1.38478 * 120.04042 * 0.04142 * 19 18 16 21 21 O 1.36056 * 120.05277 * 179.97438 * 20 19 18 22 22 C 1.42893 * 117.00205 * 0.02562 * 21 20 19 23 23 C 1.53003 * 109.47283 * 180.02562 * 22 21 20 24 24 H 1.09002 * 109.82342 * 305.56631 * 23 22 21 25 25 C 1.54380 * 109.83204 * 184.58323 * 23 22 21 26 26 C 1.55299 * 102.25703 * 219.12845 * 25 23 22 27 27 C 1.54951 * 100.94185 * 34.13386 * 26 25 23 28 28 O 1.43237 * 109.83171 * 66.45135 * 23 22 21 29 29 H 0.97004 * 120.00341 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00174 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.47083 * 59.99445 * 12 10 9 32 32 H 1.09004 * 109.46744 * 299.99380 * 12 10 9 33 33 H 0.97000 * 120.00247 * 359.97438 * 13 12 10 34 34 H 1.07994 * 120.02187 * 359.97438 * 15 14 13 35 35 H 1.07999 * 119.92067 * 179.97438 * 18 16 15 36 36 H 1.07998 * 119.97656 * 180.02562 * 19 18 16 37 37 H 1.09003 * 109.47111 * 299.99406 * 22 21 20 38 38 H 1.08998 * 109.47485 * 59.99996 * 22 21 20 39 39 H 1.09001 * 110.84791 * 337.32116 * 25 23 22 40 40 H 1.09004 * 110.84645 * 100.93617 * 25 23 22 41 41 H 1.09000 * 111.12506 * 276.21959 * 26 25 23 42 42 H 1.09004 * 111.12833 * 152.04814 * 26 25 23 43 43 H 1.09001 * 110.31286 * 204.64312 * 27 26 25 44 44 H 1.09000 * 110.39310 * 82.50940 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2438 -4.8630 0.0010 13 7 2.1957 -5.9765 0.0017 14 6 1.7292 -7.2960 0.0019 15 6 0.3657 -7.5513 0.0005 16 6 -0.0929 -8.8571 0.0002 17 9 -1.4209 -9.1055 -0.0064 18 6 0.8070 -9.9093 0.0007 19 6 2.1672 -9.6601 0.0010 20 6 2.6330 -8.3560 0.0017 21 8 3.9713 -8.1105 0.0025 22 6 4.8391 -9.2456 0.0021 23 6 6.2949 -8.7747 0.0038 24 1 6.4637 -8.0926 -0.8295 25 6 7.2389 -9.9907 -0.1127 26 6 8.3943 -9.6046 0.8505 27 6 7.6184 -8.8288 1.9445 28 8 6.5905 -8.1142 1.2400 29 1 -0.4851 0.8401 -0.0004 30 1 0.3534 -2.3906 -0.0002 31 1 0.6181 -4.9209 -0.8896 32 1 0.6162 -4.9205 0.8904 33 1 3.1494 -5.7993 0.0021 34 1 -0.3375 -6.7316 -0.0003 35 1 0.4458 -10.9271 0.0008 36 1 2.8666 -10.4830 0.0010 37 1 4.6512 -9.8470 0.8916 38 1 4.6521 -9.8457 -0.8884 39 1 6.7420 -10.9011 0.2228 40 1 7.6052 -10.1011 -1.1334 41 1 9.1213 -8.9619 0.3540 42 1 8.8744 -10.4917 1.2637 43 1 8.2815 -8.1311 2.4560 44 1 7.1751 -9.5218 2.6596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176920445.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:41 Heat of formation + Delta-G solvation = -160.063727 kcal Electronic energy + Delta-G solvation = -28552.053432 eV Core-core repulsion = 24190.168368 eV Total energy + Delta-G solvation = -4361.885064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.77046 -41.36471 -40.48223 -40.09712 -38.24463 -36.44533 -35.76652 -33.40064 -33.21251 -32.02925 -31.16596 -30.25526 -28.16485 -26.86501 -26.22748 -23.60782 -23.06871 -22.56140 -21.91385 -21.21208 -20.06881 -19.43787 -18.70250 -18.05936 -17.90085 -17.52514 -16.92121 -16.72785 -16.65247 -16.28599 -16.21035 -16.14470 -15.98649 -15.74370 -15.35993 -15.31102 -14.74404 -14.43210 -14.19474 -14.08611 -13.84634 -13.56723 -13.51414 -13.17713 -13.07141 -12.91719 -12.66616 -12.48165 -12.30854 -12.19580 -12.14793 -12.01048 -11.75272 -11.65973 -11.59386 -11.12317 -10.56254 -10.51884 -10.11174 -9.48888 -8.52886 -8.21976 -6.02777 0.24669 0.44472 1.34657 1.40478 1.53280 1.90311 2.08137 2.22498 2.39684 2.67588 2.91091 3.11685 3.14065 3.42350 3.52753 3.66137 3.87781 3.92568 4.02838 4.12391 4.15246 4.19813 4.26661 4.36233 4.37791 4.41320 4.43999 4.44825 4.60870 4.75094 4.79585 4.88795 4.92894 4.96931 5.02707 5.23232 5.24281 5.25738 5.35927 5.77405 5.85838 6.03484 6.12904 6.47766 6.52193 6.72657 7.03029 7.42959 7.95865 8.64110 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008441 B = 0.002948 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3316.302462 B = 9495.709341 C =12605.507690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.995 3.005 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.339 4.339 8 H 0.080 0.920 9 N -0.559 5.559 10 C 0.429 3.571 11 O -0.629 6.629 12 C 0.126 3.874 13 N -0.727 5.727 14 C 0.209 3.791 15 C -0.218 4.218 16 C 0.099 3.901 17 F -0.146 7.146 18 C -0.170 4.170 19 C -0.128 4.128 20 C 0.037 3.963 21 O -0.332 6.332 22 C 0.048 3.952 23 C 0.071 3.929 24 H 0.074 0.926 25 C -0.136 4.136 26 C -0.148 4.148 27 C 0.034 3.966 28 O -0.407 6.407 29 H 0.280 0.720 30 H 0.400 0.600 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.408 0.592 34 H 0.143 0.857 35 H 0.161 0.839 36 H 0.167 0.833 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.110 0.890 43 H 0.084 0.916 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.126 -25.713 -0.038 26.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.468 4.468 8 H 0.098 0.902 9 N -0.195 5.195 10 C 0.217 3.783 11 O -0.516 6.516 12 C -0.002 4.002 13 N -0.359 5.359 14 C 0.104 3.896 15 C -0.243 4.243 16 C 0.079 3.921 17 F -0.125 7.125 18 C -0.191 4.191 19 C -0.147 4.147 20 C -0.012 4.012 21 O -0.247 6.247 22 C -0.027 4.027 23 C 0.014 3.986 24 H 0.092 0.908 25 C -0.174 4.174 26 C -0.186 4.186 27 C -0.042 4.042 28 O -0.327 6.327 29 H 0.090 0.910 30 H 0.235 0.765 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.245 0.755 34 H 0.161 0.839 35 H 0.178 0.822 36 H 0.185 0.815 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.097 0.903 42 H 0.128 0.872 43 H 0.102 0.898 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.590 -25.011 0.039 26.445 hybrid contribution -0.141 1.054 0.027 1.064 sum 8.449 -23.957 0.065 25.403 Atomic orbital electron populations 1.69664 1.06863 1.29644 1.49318 1.26087 0.96571 1.02509 0.95760 0.84898 0.77885 0.76608 0.78778 1.19451 1.19313 1.19773 1.19691 0.92813 0.83775 1.50545 0.90156 1.41817 1.09531 1.04470 1.63713 1.20607 0.88159 0.86227 0.83334 1.90498 1.15781 1.87589 1.57781 1.20874 0.91675 0.83757 1.03893 1.44386 1.09307 1.01086 1.81073 1.17125 0.91382 0.83312 0.97737 1.20462 0.93411 0.97114 1.13291 1.17366 0.77385 0.93377 1.03930 1.91461 1.31805 1.95016 1.94180 1.20908 0.91922 0.99299 1.07000 1.21056 0.96361 0.94365 1.02957 1.18660 0.83026 0.93009 1.06498 1.86110 1.13200 1.35746 1.89597 1.23492 0.88528 0.87495 1.03165 1.22968 0.92584 0.95609 0.87456 0.90826 1.23111 0.94911 0.96717 1.02630 1.23273 0.97811 1.01649 0.95853 1.23655 0.89158 0.95940 0.95479 1.88583 1.58281 1.52089 1.33791 0.91001 0.76544 0.88392 0.88582 0.75492 0.83881 0.82185 0.81541 0.90665 0.88456 0.88116 0.87729 0.90314 0.87196 0.89809 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.16 13.05 21.66 0.28 -48.88 16 2 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 3 Si 1.00 42.90 29.55 68.60 2.03 44.93 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.34 -19.36 9.68 84.04 0.81 -18.55 16 8 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 9 N -0.56 -28.96 5.29 -306.98 -1.62 -30.58 16 10 C 0.43 20.99 7.85 87.66 0.69 21.68 16 11 O -0.63 -35.74 15.24 -3.05 -0.05 -35.79 16 12 C 0.13 4.65 5.40 85.63 0.46 5.11 16 13 N -0.73 -26.99 5.70 -342.71 -1.95 -28.94 16 14 C 0.21 6.65 6.67 38.22 0.25 6.90 16 15 C -0.22 -6.22 9.29 22.43 0.21 -6.01 16 16 C 0.10 2.53 7.29 22.36 0.16 2.69 16 17 F -0.15 -3.78 17.26 44.97 0.78 -3.01 16 18 C -0.17 -3.49 10.02 22.33 0.22 -3.26 16 19 C -0.13 -2.62 9.03 22.34 0.20 -2.42 16 20 C 0.04 1.03 6.70 22.58 0.15 1.18 16 21 O -0.33 -9.75 9.37 -91.73 -0.86 -10.61 16 22 C 0.05 0.91 4.27 71.98 0.31 1.22 16 23 C 0.07 1.41 3.81 31.06 0.12 1.53 16 24 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 25 C -0.14 -1.38 6.54 31.85 0.21 -1.17 16 26 C -0.15 -1.56 7.16 32.05 0.23 -1.33 16 27 C 0.03 0.57 7.78 72.65 0.57 1.14 16 28 O -0.41 -10.83 11.00 -146.53 -1.61 -12.44 16 29 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 30 H 0.40 19.46 7.90 -92.71 -0.73 18.73 16 31 H 0.10 3.18 7.95 -2.39 -0.02 3.16 16 32 H 0.10 3.15 7.95 -2.38 -0.02 3.14 16 33 H 0.41 17.29 6.80 -92.71 -0.63 16.66 16 34 H 0.14 3.86 6.74 -2.91 -0.02 3.84 16 35 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.17 2.16 6.29 -2.91 -0.02 2.14 16 37 H 0.08 1.23 7.66 -2.39 -0.02 1.21 16 38 H 0.10 1.26 7.66 -2.39 -0.02 1.24 16 39 H 0.10 0.63 7.85 -2.39 -0.02 0.61 16 40 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -72.96 373.97 1.75 -71.21 By element: Atomic # 1 Polarization: 45.69 SS G_CDS: -0.30 Total: 45.38 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 5.06 Total: 8.73 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -3.29 Total: -108.40 kcal Atomic # 8 Polarization: -56.33 SS G_CDS: -2.52 Total: -58.84 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.78 Total: -3.01 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -72.96 1.75 -71.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176920445.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.855 kcal (2) G-P(sol) polarization free energy of solvation -72.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds